genome.fa.s7952.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007952.1 Hibiscus syriacus cultivar Beakdansim tig00110377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3169409

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1872 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388079--388168	40	2.2	41	88	6	128	61	5	3	30	1.35
388253--388293	20	2.0	20	85	9	55	70	9	0	19	1.14
388887--388946	22	2.7	22	89	5	86	50	10	1	38	1.46
389164--389222	18	3.4	17	79	6	64	49	18	8	23	1.75
389095--389397	104	3.0	101	82	5	342	45	18	10	26	1.81
389098--389398	68	4.4	67	75	15	251	44	18	10	26	1.82
389097--389398	32	8.9	33	75	15	210	45	18	10	26	1.81
389318--389482	84	2.0	84	87	2	242	44	17	12	25	1.84
389448--389559	50	2.2	50	90	6	174	47	18	10	23	1.80
389402--389528	68	1.9	68	80	3	148	46	18	11	23	1.82
391040--391074	3	12.0	3	87	6	54	62	0	0	37	0.95
391040--391074	15	2.4	14	95	4	61	62	0	0	37	0.95
391758--392389	85	7.4	84	84	2	744	26	17	20	35	1.95
391765--392389	170	3.7	170	86	1	824	27	17	20	34	1.95
391730--392389	255	2.6	254	85	3	835	27	17	20	34	1.95
392458--392844	86	4.5	86	87	0	499	21	21	24	32	1.98
394836--395030	93	2.1	93	93	0	327	31	18	15	33	1.93
399020--399050	16	1.9	16	93	0	53	9	16	12	61	1.56
399564--399634	3	23.7	3	86	11	101	61	0	1	36	1.05
408649--408698	15	3.4	15	72	5	57	48	0	8	44	1.32
408640--408712	29	2.6	29	97	2	139	47	0	9	42	1.36
408664--408715	14	3.6	14	74	5	59	50	0	9	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408705--408751	22	2.2	20	85	7	58	63	2	0	34	1.06
409004--409070	3	22.0	3	93	3	116	35	0	0	64	0.94
410582--410723	30	4.8	30	68	11	94	19	10	8	61	1.54
414282--414313	16	2.0	17	88	11	50	56	0	3	40	1.15
415214--415350	50	2.7	50	81	0	175	37	20	11	29	1.88
417103--417229	5	25.8	5	96	3	240	40	19	0	40	1.52
418452--418520	35	2.0	35	94	0	120	42	18	7	31	1.78
419956--420013	22	2.8	20	87	12	82	22	15	20	41	1.90
421292--421350	26	2.3	26	87	0	82	23	30	13	32	1.93
425224--425347	50	2.5	51	80	2	153	46	10	8	33	1.69
435747--436422	156	4.3	156	86	3	858	46	7	19	26	1.76
438265--438377	33	3.4	33	86	1	136	10	35	28	25	1.89
438300--438356	23	2.7	20	79	12	60	12	33	28	26	1.92
443385--443514	61	2.1	61	98	0	251	36	7	12	43	1.71
444624--444692	28	2.5	28	95	0	120	26	30	14	28	1.95
444765--444857	21	4.5	21	78	4	100	39	18	24	17	1.91
444765--444857	41	2.3	41	100	0	186	39	18	24	17	1.91
444784--444918	41	3.3	41	84	4	148	38	20	20	20	1.94
444846--444939	20	4.7	20	78	2	80	35	23	17	24	1.95
445458--445538	19	4.5	19	73	16	73	46	24	17	11	1.80
445543--445646	19	5.6	19	72	15	83	13	21	20	45	1.85
445600--445646	20	2.3	20	79	13	60	12	25	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446791--446859	21	3.3	21	75	4	68	26	30	23	20	1.98
446807--446879	21	3.5	20	74	7	65	24	34	21	19	1.96
448217--448252	14	2.6	14	95	0	63	30	0	25	44	1.54
448357--448423	19	3.8	19	72	23	65	44	20	22	11	1.84
450755--450779	12	2.1	12	100	0	50	0	28	0	72	0.86
450954--451007	24	2.2	24	90	0	81	38	20	16	24	1.92
451420--451477	20	2.9	20	92	0	89	37	20	22	18	1.94
451501--451554	14	3.5	14	77	22	63	11	20	20	48	1.80
451483--451553	33	2.2	33	84	0	88	19	19	21	39	1.93
451496--451573	33	2.4	33	88	0	111	14	23	20	42	1.88
453517--453572	20	2.9	19	92	5	94	37	23	23	16	1.93
453572--453629	14	3.9	14	77	16	62	50	25	15	8	1.73
453556--453634	32	2.4	33	93	2	133	48	24	17	10	1.78
453641--453754	18	6.7	18	70	17	82	14	21	21	42	1.88
453662--453718	14	3.8	14	76	17	60	12	17	22	47	1.81
453646--453734	32	2.8	32	96	0	160	13	19	21	46	1.84
453719--453762	20	2.2	20	88	4	63	18	25	20	36	1.95
454230--454274	18	2.5	18	88	0	72	13	15	44	26	1.83
455629--455679	19	2.7	19	100	0	102	9	21	27	41	1.84
455878--455921	22	2.0	22	86	0	61	18	13	43	25	1.86
455891--455993	47	2.2	47	96	0	188	25	4	49	20	1.68
456156--456249	20	4.7	20	80	2	89	24	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456136--456250	20	5.7	20	78	5	88	24	16	23	35	1.95
456239--456331	20	4.5	21	78	4	100	17	24	18	39	1.91
456178--456312	41	3.3	41	84	4	148	20	20	20	38	1.94
456239--456331	41	2.3	41	100	0	186	17	24	18	39	1.91
459189--459214	10	2.6	10	100	0	52	23	42	0	34	1.54
459832--459861	14	2.1	14	100	0	60	26	13	20	40	1.89
464038--464081	16	2.6	17	82	13	56	15	22	0	61	1.34
465215--465249	18	1.9	18	88	0	52	20	8	22	48	1.76
469907--469962	24	2.3	24	100	0	112	37	16	17	28	1.91
470484--470508	8	3.1	8	100	0	50	36	24	24	16	1.94
477546--477575	15	2.0	15	100	0	60	6	13	33	46	1.69
480735--480768	18	1.9	17	88	5	50	38	2	8	50	1.49
482834--482881	24	2.0	24	100	0	96	12	33	25	29	1.92
492851--492917	20	3.3	20	79	4	89	41	17	23	16	1.89
492861--492936	21	3.7	21	80	3	100	40	18	25	15	1.90
492925--493059	20	6.7	20	82	4	128	34	23	17	23	1.96
492847--492936	41	2.2	41	100	0	180	41	17	24	16	1.90
492922--493053	61	2.2	61	87	0	183	37	23	16	22	1.94
493224--493267	22	2.0	22	95	0	79	20	45	15	18	1.85
494868--494906	18	2.2	18	90	0	60	25	46	12	15	1.81
495371--495516	20	7.4	20	68	15	81	37	23	21	16	1.93
495390--495516	37	3.2	37	71	14	128	37	23	22	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495368--495531	81	2.0	82	98	1	321	38	23	20	17	1.93
495506--495562	14	3.8	14	80	17	69	49	22	17	10	1.77
495491--495579	32	2.8	32	93	3	144	47	21	19	12	1.82
495453--495584	19	7.6	19	71	22	74	42	22	21	13	1.88
495596--495653	14	3.9	14	79	16	71	8	17	25	48	1.75
495591--495669	32	2.4	33	95	2	142	10	18	24	46	1.80
495610--495727	20	6.4	19	77	11	95	13	20	24	41	1.88
497624--497676	14	3.5	14	74	18	52	47	20	18	13	1.82
497635--497681	14	2.9	16	74	22	53	46	19	21	12	1.82
497605--497681	32	2.4	33	88	2	111	41	22	22	14	1.89
497700--497756	20	2.9	20	94	2	98	17	22	22	36	1.94
501268--501391	33	3.8	33	85	8	184	41	20	22	15	1.89
501269--501398	63	2.0	66	94	4	230	40	20	22	16	1.91
501391--501433	20	2.2	20	87	4	61	16	18	23	41	1.89
501572--501606	13	2.7	13	90	0	61	48	25	0	25	1.51
502944--503009	21	3.2	21	68	8	55	18	21	36	24	1.95
502982--503065	42	2.0	42	85	0	114	22	16	39	21	1.92
504777--505205	214	2.0	213	97	2	808	44	17	15	23	1.86
505801--505878	41	1.9	41	86	0	111	23	14	21	41	1.89
505783--505875	20	4.7	20	76	4	80	23	16	24	35	1.95
505864--505956	20	4.5	21	78	4	100	17	24	17	40	1.90
505844--505956	41	2.8	41	90	2	138	19	23	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506452--507023	112	5.1	112	92	1	905	47	13	13	25	1.80
506452--507023	226	2.5	224	92	1	932	47	13	13	25	1.80
506894--507349	182	2.5	182	90	2	702	44	12	14	27	1.82
507991--508038	23	2.1	23	84	0	60	37	16	6	39	1.74
509393--509501	24	4.5	24	84	0	128	49	17	10	22	1.76
509410--509473	12	5.4	11	78	14	56	48	18	9	23	1.77
511864--511890	14	1.9	14	100	0	54	25	37	22	14	1.93
513585--513636	17	3.1	17	100	0	104	34	28	11	25	1.91
514831--514897	29	2.3	29	92	0	107	44	14	8	31	1.76
517739--517784	2	23.0	2	100	0	92	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16