genome.fa.s7952.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007952.1 Hibiscus syriacus cultivar Beakdansim tig00110377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3169409

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1872 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938207--938307	42	2.4	42	74	12	100	21	18	34	24	1.96
940349--940387	20	2.0	20	94	0	69	51	20	15	12	1.76
940835--940955	20	6.1	20	71	11	104	22	19	20	38	1.94
940943--940995	20	2.7	19	80	8	70	28	15	30	26	1.96
942255--942307	26	2.0	26	100	0	106	45	3	18	32	1.68
944574--944601	2	14.0	2	100	0	56	50	0	0	50	1.00
947208--947570	183	2.0	183	100	0	726	35	20	16	26	1.94
951940--952088	65	2.3	64	82	6	167	28	19	22	28	1.98
954653--954760	54	2.0	53	92	1	180	25	20	15	37	1.92
960169--960253	42	2.0	42	97	2	163	49	4	18	27	1.67
962188--962222	16	2.1	18	89	10	56	65	0	8	25	1.21
962233--962270	20	1.9	20	88	0	58	63	2	7	26	1.35
962794--962895	34	2.9	36	88	7	163	29	12	13	44	1.81
963443--964379	105	9.0	104	92	1	1398	22	17	25	33	1.96
965022--965179	68	2.4	66	84	4	201	35	8	22	32	1.85
965023--965196	65	2.6	67	82	4	183	36	8	22	32	1.85
966255--966305	22	2.3	22	96	0	93	25	11	27	35	1.91
966911--966970	20	2.9	21	80	7	61	1	13	6	78	1.02
966927--966979	23	2.4	22	84	6	72	0	15	5	79	0.91
970156--970190	16	2.1	18	89	10	56	65	0	8	25	1.21
970200--970258	24	2.6	23	76	7	66	66	1	5	27	1.22
970766--970867	34	2.9	36	85	7	154	29	11	13	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972414--972447	15	2.3	15	90	5	52	29	5	38	26	1.80
972762--972806	21	2.1	21	100	0	90	24	24	4	46	1.71
985994--986033	19	2.1	19	90	0	62	55	7	5	32	1.50
986134--986167	12	2.7	13	86	9	52	41	5	8	44	1.60
986789--986817	15	1.9	15	100	0	58	41	20	6	31	1.79
987385--987417	12	2.6	13	90	4	50	45	6	12	36	1.66
1003401--1003432	17	1.9	17	93	6	57	50	0	0	50	1.00
1014538--1014678	65	2.2	64	81	9	162	27	18	22	31	1.97
1014563--1014728	65	2.6	63	78	11	167	25	18	24	31	1.98
1017210--1017248	19	2.0	20	85	5	53	33	2	35	28	1.71
1021240--1021279	21	1.9	21	89	0	62	37	7	2	52	1.43
1023221--1023267	17	2.7	17	83	9	60	27	21	25	25	1.99
1023239--1023448	65	3.2	64	76	12	205	26	18	23	31	1.98
1031226--1031435	106	2.0	106	90	0	330	28	21	17	32	1.96
1031871--1032020	30	4.8	30	78	9	147	36	14	23	26	1.93
1032086--1032169	36	2.3	36	91	0	132	42	14	19	23	1.87
1032206--1032253	21	2.3	21	92	0	78	35	4	27	33	1.76
1032225--1032661	39	11.4	39	87	4	514	35	15	19	29	1.92
1032249--1032661	78	5.4	78	87	3	568	35	15	19	28	1.93
1032712--1032899	76	2.5	74	82	7	227	40	13	15	29	1.87
1038692--1038737	22	2.1	22	84	11	60	58	10	8	21	1.58
1041351--1042071	6	120.3	6	99	0	1435	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042134--1042159	6	4.3	6	100	0	52	38	0	0	61	0.96
1047427--1047474	24	2.0	24	84	4	62	54	2	2	41	1.24
1047872--1047911	10	3.8	11	80	12	57	72	0	2	25	0.97
1047875--1047926	17	2.9	17	78	13	59	69	0	1	28	0.99
1048710--1048752	16	2.9	15	78	21	54	39	6	0	53	1.28
1049573--1049621	19	2.7	17	84	9	53	26	18	30	24	1.98
1049593--1049802	64	3.2	61	75	14	190	26	16	25	31	1.96
1049699--1049749	19	2.7	19	85	8	70	25	15	35	23	1.94
1049763--1049823	21	2.9	21	97	0	113	22	14	29	32	1.94
1059647--1059702	22	2.6	22	83	13	80	30	14	17	37	1.90
1061191--1061220	15	2.0	15	100	0	60	0	13	0	86	0.57
1063942--1064026	33	2.6	33	96	0	152	18	32	23	24	1.97
1064213--1064266	6	9.2	6	84	8	67	79	1	3	14	0.95
1073533--1074273	182	4.1	182	90	0	1131	41	14	15	28	1.86
1076136--1076190	24	2.4	23	80	11	69	43	0	7	49	1.30
1076864--1076902	18	2.2	18	95	0	69	58	0	33	7	1.26
1078456--1078504	19	2.6	19	96	0	89	32	2	10	55	1.45
1078841--1079989	201	5.7	200	86	3	1454	37	14	16	31	1.88
1080991--1081042	25	2.1	25	100	0	104	26	23	11	38	1.89
1084460--1084640	92	2.0	94	86	3	260	34	18	18	29	1.94
1086564--1086674	39	2.8	39	72	17	104	36	14	0	47	1.50
1086589--1086653	16	4.2	15	72	16	53	36	12	0	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087065--1087089	2	12.5	2	100	0	50	48	0	0	52	1.00
1087099--1087146	20	2.4	20	82	6	62	68	6	0	25	1.12
1087120--1087180	13	4.5	13	73	15	52	68	4	0	26	1.09
1090249--1090405	65	2.4	65	86	4	201	28	19	22	29	1.98
1094676--1094715	20	2.0	21	85	5	55	25	17	10	47	1.78
1095259--1095307	22	2.3	21	92	3	80	24	32	4	38	1.74
1096676--1096735	26	2.3	27	79	2	68	21	10	23	45	1.82
1099276--1099305	14	2.1	14	93	0	51	60	16	13	10	1.59
1099274--1099359	33	2.6	34	81	1	93	55	15	15	13	1.69
1099357--1099429	33	2.2	33	85	0	92	60	21	4	13	1.50
1099342--1099430	33	2.5	37	73	14	87	60	20	5	13	1.53
1099638--1099703	34	1.9	34	84	6	89	56	13	10	19	1.67
1099674--1099728	14	3.9	14	80	0	56	56	16	9	18	1.66
1099662--1099754	38	2.4	38	83	3	116	56	15	10	17	1.66
1101308--1101388	32	2.5	32	91	0	126	28	16	20	34	1.94
1101308--1101408	32	3.2	32	85	0	103	27	16	19	35	1.94
1102335--1102383	19	2.5	20	83	3	64	28	16	18	36	1.92
1102402--1102480	19	4.1	19	84	11	106	31	13	21	32	1.93
1105488--1105540	21	2.5	21	81	0	61	20	24	18	35	1.95
1105530--1105636	20	5.3	20	80	4	126	38	19	19	22	1.94
1105586--1105646	20	3.0	20	88	4	61	36	19	21	22	1.95
1106464--1106517	24	2.2	24	93	0	90	20	18	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108905--1108978	20	3.7	21	85	7	109	33	24	21	20	1.97
1108970--1109045	33	2.3	34	90	2	118	44	17	23	14	1.85
1109060--1109144	33	2.5	33	92	1	134	14	23	18	43	1.87
1109257--1109293	14	2.6	14	86	0	56	48	21	0	29	1.50
1110658--1110716	21	2.8	21	78	0	73	22	25	30	22	1.99
1111198--1111266	20	3.5	20	91	0	111	36	24	20	18	1.95
1111311--1111454	20	7.5	20	81	9	174	20	19	20	39	1.93
1111273--1111454	40	4.9	40	76	13	174	19	20	20	40	1.92
1113327--1113366	20	2.0	20	95	0	71	57	20	12	10	1.63
1114022--1114115	20	4.7	20	84	2	134	21	21	20	37	1.95
1114024--1114115	41	2.3	40	88	1	130	20	21	20	36	1.95
1114002--1114115	61	1.9	60	90	1	183	22	21	21	35	1.96
1114112--1114172	21	3.0	21	90	2	88	40	18	22	18	1.91
1113999--1114171	20	8.5	21	79	9	128	28	19	21	30	1.98
1115118--1115169	15	3.3	15	79	12	50	63	5	0	30	1.18
1115236--1115304	35	2.0	35	82	5	86	43	0	2	53	1.15
1115424--1115494	14	5.2	14	72	13	58	42	1	1	54	1.17
1115554--1115620	12	5.4	12	77	19	66	37	1	0	61	1.05
1115532--1115611	12	5.8	14	72	22	71	40	0	0	60	0.97
1115554--1115621	25	2.7	24	75	22	68	38	1	0	60	1.06
1121380--1121419	18	2.2	18	90	0	62	45	5	5	45	1.47
1123275--1123320	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123815--1123875	22	2.9	21	70	4	52	45	13	14	26	1.81
1127214--1127274	22	2.8	22	92	0	95	29	22	24	22	1.99
1133613--1133694	23	3.7	23	79	9	82	23	29	23	24	1.99
1135970--1136017	22	2.2	22	92	0	78	18	45	22	12	1.83
1141106--1141166	22	2.8	22	84	0	77	31	19	24	24	1.98
1146395--1146454	21	2.6	24	82	10	81	35	20	18	26	1.95
1147885--1147917	16	2.1	16	100	0	66	42	12	12	33	1.79
1160250--1160289	12	3.3	12	92	0	62	22	17	55	5	1.61
1160244--1160283	18	2.2	18	90	0	62	25	17	50	7	1.72
1160256--1160290	6	5.8	6	86	0	52	20	17	60	2	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16