genome.fa.s7956.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3102597

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3849--4013	60	2.8	60	78	10	155	37	5	23	33	1.78
20611--20671	23	2.7	23	89	0	95	26	27	26	19	1.99
20694--20894	103	2.0	103	96	0	375	36	22	12	28	1.91
21972--22009	20	1.9	20	84	10	51	34	10	5	50	1.59
25724--25776	23	2.3	23	90	0	88	26	26	26	20	1.99
25795--26007	103	2.1	103	96	0	390	36	24	13	26	1.92
27077--27114	20	1.9	20	84	10	51	34	10	5	50	1.59
28798--28831	10	3.2	10	88	12	50	44	2	0	52	1.16
28796--28847	21	2.4	22	78	15	63	44	5	0	50	1.26
35744--35834	46	2.0	46	97	0	173	43	16	12	27	1.83
36305--36356	20	2.6	20	96	0	95	38	26	13	21	1.90
36346--36444	21	4.8	20	72	6	72	36	23	19	21	1.95
36411--36604	20	9.6	20	81	5	221	35	25	19	19	1.95
36411--36604	60	3.2	60	83	0	253	35	25	19	19	1.95
36986--37056	33	2.2	33	92	0	115	11	22	18	47	1.80
37177--37231	14	3.6	14	73	21	56	40	23	27	9	1.85
37177--37247	33	2.2	33	92	0	115	42	25	23	8	1.82
37243--37340	19	5.7	19	70	22	81	10	24	22	42	1.84
37265--37354	14	5.7	14	74	23	81	8	25	23	42	1.83
37248--37362	33	3.5	33	95	0	212	9	24	20	45	1.81
39056--39435	185	2.0	186	99	0	753	22	12	18	46	1.83
39056--39435	93	4.1	93	99	0	753	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39479--39607	19	7.3	19	75	17	125	45	28	17	8	1.77
39515--39607	33	2.8	32	91	4	150	46	27	18	7	1.76
39479--39607	52	2.5	52	74	14	140	45	28	17	8	1.77
39603--39737	19	7.6	19	75	16	128	11	19	23	45	1.82
39625--39681	14	3.7	14	77	20	60	10	21	22	45	1.82
39608--39700	33	2.8	33	95	0	168	10	20	21	47	1.80
41553--41625	38	1.9	38	97	0	137	28	1	16	53	1.51
41548--41612	19	3.4	19	64	8	51	24	1	15	58	1.46
41607--41642	14	2.6	14	95	0	63	33	0	22	44	1.53
41749--41850	19	5.6	19	84	13	151	44	17	23	14	1.86
41879--42185	19	17.4	19	79	16	358	14	20	18	47	1.83
41879--42118	71	3.4	71	83	11	355	15	20	17	47	1.83
41847--42185	142	2.4	136	89	6	504	14	20	18	46	1.83
41879--42157	52	5.2	52	90	6	354	14	20	17	47	1.83
44492--44516	12	2.1	12	100	0	50	0	28	0	72	0.86
44691--44737	24	2.0	24	87	8	69	38	21	14	25	1.92
45411--45759	20	17.5	20	87	3	418	20	18	26	34	1.95
51795--51858	33	1.9	33	84	6	85	28	29	28	14	1.95
52991--53029	2	19.5	2	100	0	78	48	0	0	51	1.00
57336--57378	22	2.0	22	90	0	68	25	23	23	27	2.00
60997--61032	16	2.4	15	86	13	56	33	0	5	61	1.19
61003--61033	16	1.9	16	100	0	62	35	0	6	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62847--62907	22	2.8	22	97	2	115	22	34	32	9	1.87
71612--71696	43	2.0	43	100	0	170	30	11	18	38	1.87
72303--72380	34	2.4	33	87	10	117	24	16	11	47	1.80
72407--72657	134	1.9	134	82	3	317	20	19	11	47	1.81
74253--74286	17	2.0	17	100	0	68	70	0	0	29	0.87
75189--75371	92	2.0	87	88	5	267	56	8	2	32	1.41
76526--76579	20	2.7	19	75	8	63	33	31	18	16	1.93
76566--76683	20	5.8	20	70	14	71	37	20	19	22	1.94
76629--76863	20	11.6	20	72	8	127	38	24	18	18	1.93
76629--76846	81	2.7	79	80	7	226	38	24	17	18	1.93
76693--76858	40	4.1	41	88	1	246	38	25	18	18	1.92
76707--76863	60	2.6	61	80	6	158	38	24	17	18	1.92
77424--77474	20	2.5	20	87	0	66	49	21	13	15	1.79
77467--77517	14	3.6	14	97	0	93	43	23	25	7	1.81
77529--77628	19	5.2	19	84	4	119	16	22	17	45	1.86
77534--77627	20	4.8	19	85	5	125	13	21	18	46	1.83
79314--79693	94	4.1	94	94	1	638	22	12	17	47	1.81
79834--79888	19	2.8	20	80	5	67	12	20	21	45	1.84
80341--80407	21	3.2	21	66	6	55	23	35	20	19	1.95
80294--80407	42	2.7	41	81	5	104	22	35	19	21	1.96
81759--81794	14	2.6	14	95	0	63	33	0	22	44	1.53
81901--81980	33	2.4	33	89	4	117	46	23	18	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81986--82108	19	6.9	19	65	18	86	13	25	19	42	1.87
81990--82083	33	2.8	33	96	0	170	12	25	19	42	1.86
82025--82136	53	2.1	52	85	1	143	15	22	18	43	1.87
82070--82170	34	3.0	34	77	2	105	16	21	19	41	1.90
82143--82216	20	3.7	20	67	16	53	25	17	24	32	1.97
84628--84681	24	2.2	24	93	0	90	40	16	18	24	1.90
85535--85835	20	14.9	19	74	13	139	20	18	23	37	1.94
85543--85812	40	6.7	40	90	3	319	20	18	22	38	1.94
85541--85874	60	5.5	60	78	8	293	19	18	23	38	1.93
85821--85875	20	2.8	20	88	5	76	10	18	25	45	1.82
88446--88481	17	2.2	16	95	5	63	33	0	2	63	1.08
88451--88499	16	3.0	16	84	3	53	28	0	6	65	1.16
91876--91919	16	2.8	16	79	6	54	65	2	2	29	1.16
101986--102033	19	2.6	19	93	3	80	52	6	10	31	1.60
103514--103572	29	2.0	29	96	0	109	37	15	6	40	1.74
107700--107741	16	2.6	16	92	3	66	28	35	9	26	1.88
108767--108829	33	1.9	33	93	0	108	30	23	20	25	1.99
109367--109498	59	2.2	59	77	5	131	32	22	15	29	1.95
109947--110019	2	36.5	2	100	0	146	49	0	0	50	1.00
122992--123048	3	19.0	3	85	0	78	33	33	0	33	1.58
122993--123048	21	2.7	21	100	0	112	33	33	0	32	1.58
125210--125274	17	3.8	17	95	0	112	15	3	41	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126681--126729	25	2.0	25	84	15	66	46	12	4	36	1.60
127872--127909	3	12.7	3	100	0	76	65	0	34	0	0.93
130309--130335	2	13.5	2	100	0	54	48	0	0	51	1.00
131326--131369	2	22.0	2	100	0	88	50	0	0	50	1.00
131668--131861	101	1.9	101	88	4	293	39	10	12	37	1.79
145959--145985	13	2.1	13	100	0	54	37	14	25	22	1.93
147129--147174	21	2.2	21	100	0	92	34	23	17	23	1.96
149041--149106	12	5.6	12	83	3	80	12	15	46	25	1.80
149041--149106	23	2.8	24	81	4	80	12	15	46	25	1.80
149168--149203	2	18.0	2	100	0	72	50	0	0	50	1.00
154839--154928	15	6.0	15	76	5	65	43	6	14	35	1.72
154867--154928	30	2.1	30	90	3	99	41	6	16	35	1.74
155254--155324	19	3.6	19	70	10	54	47	1	1	49	1.18
155278--155338	28	2.5	26	78	21	69	50	1	0	47	1.10
155356--155406	23	2.2	23	89	6	77	41	3	1	52	1.31
155396--155442	22	2.1	23	88	4	69	53	0	0	46	1.00
155274--155440	30	5.6	30	70	17	89	49	1	0	48	1.16
155680--155764	42	2.0	42	83	0	107	54	9	10	25	1.65
169499--169539	14	3.0	14	86	13	59	63	2	0	34	1.08
170819--170957	36	3.9	36	93	1	208	43	14	16	25	1.86
184489--184591	36	2.9	36	97	0	188	42	15	15	26	1.87
189484--189521	19	2.0	19	100	0	76	42	15	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205910--206011	3	34.7	3	92	2	163	64	0	0	34	1.00
206259--206826	118	4.8	118	90	2	921	27	20	14	37	1.91
206259--206826	231	2.4	232	90	3	886	27	20	14	37	1.91
207384--207521	52	2.7	52	94	2	233	41	21	15	22	1.90
207557--207814	51	5.0	52	96	0	457	37	23	14	24	1.92
207557--207814	103	2.5	103	94	1	455	37	23	14	24	1.92
208755--208823	6	11.2	6	76	17	61	0	17	0	82	0.67
208753--208826	31	2.4	32	86	6	107	0	17	0	82	0.67
208755--208823	25	2.7	25	82	14	88	0	17	0	82	0.67
208753--208826	20	3.6	20	79	15	80	0	17	0	82	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14