genome.fa.s7956.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3102597

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427983--428188	29	7.3	29	73	9	158	54	1	7	36	1.39
428009--428186	55	3.2	55	78	12	227	55	2	6	35	1.39
428974--429026	23	2.1	26	83	13	67	47	0	0	52	1.00
429030--429099	31	2.2	29	77	20	70	47	0	4	48	1.21
429132--429182	23	2.2	23	82	0	57	45	1	1	50	1.24
429170--429250	19	4.3	19	72	20	64	48	1	1	49	1.17
431554--431590	18	2.1	18	94	0	65	29	29	32	8	1.86
432098--432128	3	10.3	3	100	0	62	32	0	0	67	0.91
432587--432631	18	2.6	18	92	3	74	48	8	42	0	1.34
445986--446034	24	1.9	25	88	12	73	42	0	2	55	1.11
455412--455451	20	2.0	20	100	0	80	40	15	5	40	1.68
456067--456114	16	2.9	17	75	6	53	47	6	0	45	1.27
456326--456366	20	2.0	21	85	4	57	58	2	2	36	1.24
457291--457328	12	3.3	12	78	14	53	0	31	13	55	1.38
457806--457904	3	32.7	3	93	2	171	64	0	1	34	1.00
458218--459421	113	10.7	113	92	1	1731	28	19	14	37	1.91
459858--459912	22	2.5	22	87	0	83	36	14	14	34	1.87
461448--461521	35	2.1	34	80	9	78	32	21	13	32	1.92
462378--462601	84	2.7	84	97	0	421	37	22	13	26	1.92
464825--464869	6	7.5	6	82	9	56	0	20	0	80	0.72
464825--464869	17	2.5	19	85	7	58	0	20	0	80	0.72
467959--468010	14	3.6	14	81	2	50	51	7	17	23	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470075--470122	16	2.9	17	75	6	53	47	6	0	45	1.27
470334--470374	20	2.0	21	85	4	57	58	2	2	36	1.24
471297--471328	16	2.0	16	100	0	64	0	31	12	56	1.37
471799--471902	3	34.7	3	96	0	190	64	0	0	34	1.00
474236--474263	2	14.0	2	100	0	56	50	0	0	50	1.00
474922--474963	20	2.0	21	86	4	59	26	7	4	61	1.42
479538--479596	31	1.9	31	92	0	100	40	6	10	42	1.65
479621--479663	22	2.0	22	95	0	77	51	11	0	37	1.39
479623--479671	22	2.2	22	85	3	62	55	12	0	32	1.37
479611--479973	54	6.6	54	78	8	381	52	11	0	35	1.41
479643--479808	32	5.7	32	67	24	134	53	11	0	34	1.42
479612--479692	22	4.5	18	67	27	55	55	7	0	37	1.28
479611--479973	112	3.3	111	81	4	439	52	11	0	35	1.41
479733--479775	22	2.0	22	90	0	68	51	13	0	34	1.42
479817--479864	22	2.4	20	78	18	55	50	12	0	37	1.41
479785--479851	26	2.9	22	74	18	64	50	14	0	34	1.44
479835--479974	32	4.7	32	80	16	183	51	12	0	36	1.39
479901--479949	22	2.2	22	85	3	62	55	12	0	32	1.37
479706--480047	166	2.1	164	92	2	569	51	13	0	34	1.43
480031--480118	21	4.0	22	74	25	80	52	13	0	34	1.41
480169--480219	15	3.6	14	76	10	59	56	1	0	41	1.10
485232--485258	7	3.9	7	100	0	54	14	55	0	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489704--489748	20	2.4	19	85	10	65	24	22	4	48	1.68
508292--508316	12	2.1	12	100	0	50	48	28	0	24	1.52
510693--510724	4	7.8	4	93	6	55	25	0	3	71	1.00
512708--512758	17	2.9	17	75	13	50	64	3	1	29	1.22
526878--526936	29	2.0	30	90	6	93	35	5	16	42	1.71
527016--527114	21	4.8	20	83	10	119	23	36	19	21	1.95
527135--527187	20	2.7	20	90	0	79	16	28	22	32	1.96
539254--539299	20	2.3	20	88	7	67	21	8	4	65	1.38
539315--539346	16	2.0	16	93	0	55	31	3	0	65	1.08
539427--539471	2	22.5	2	100	0	90	48	0	0	51	1.00
543522--543703	95	1.9	95	90	2	294	31	19	19	29	1.96
545037--545240	99	2.1	98	88	1	309	36	25	18	20	1.95
545762--545917	84	1.9	84	80	2	188	26	25	20	27	1.99
547556--547601	20	2.3	20	88	7	67	21	8	4	65	1.38
547620--547656	3	12.0	3	88	5	56	32	2	0	64	1.07
547733--547795	2	31.5	2	100	0	126	49	0	0	50	1.00
547895--547935	3	13.7	3	80	19	50	31	0	0	68	0.90
547893--547945	9	5.9	8	85	14	52	28	1	0	69	0.99
555238--555268	2	15.5	2	100	0	62	51	0	0	48	1.00
556400--556503	31	3.4	31	78	5	95	30	29	25	13	1.94
557335--557618	31	9.2	31	97	0	532	33	16	11	38	1.85
558128--558304	64	2.8	63	84	3	203	25	19	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559012--559057	23	2.0	23	91	0	74	28	26	23	21	1.99
559024--559341	151	2.1	149	95	2	575	36	20	16	27	1.93
564219--564264	23	2.0	23	91	0	74	28	26	23	21	1.99
564242--564546	149	2.0	149	98	0	592	36	20	15	28	1.93
569749--569802	21	2.6	21	96	0	99	22	24	25	27	2.00
571130--571192	31	2.1	30	87	3	90	39	11	23	25	1.88
571135--571202	31	2.2	31	81	5	75	42	11	17	27	1.84
572090--572114	13	1.9	13	100	0	50	28	24	8	40	1.83
576400--576455	27	2.1	27	86	6	78	33	26	12	26	1.92
578275--578316	22	1.9	22	90	9	68	52	2	4	40	1.35
578283--578346	23	2.8	23	83	2	67	56	1	3	39	1.25
585926--585980	3	17.7	3	92	7	92	63	0	0	36	0.95
587703--587756	28	2.0	28	88	3	83	18	27	0	53	1.45
587712--587770	28	2.1	28	84	6	75	22	30	0	47	1.51
594741--594784	20	2.2	20	100	0	88	31	20	11	36	1.88
596560--596596	15	2.5	15	100	0	74	81	10	8	0	0.89
596560--596606	15	3.2	15	87	6	60	80	8	10	0	0.89
597326--597369	22	2.0	23	90	4	72	27	25	25	22	2.00
597551--597589	20	1.9	20	84	5	51	23	10	5	61	1.48
603098--603153	24	2.3	24	96	0	103	37	17	17	26	1.93
604637--604982	188	1.9	177	87	7	505	45	6	2	45	1.40
610299--610332	14	2.4	14	85	0	50	32	2	29	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614572--614639	24	2.8	24	78	12	77	55	1	0	42	1.08
614869--614908	18	2.3	17	82	4	53	70	0	0	30	0.88
616429--616473	23	2.0	23	100	0	90	22	26	22	28	1.99
621713--621784	37	1.9	37	94	0	126	40	15	2	41	1.61
621574--621892	173	1.8	172	95	2	577	32	19	7	40	1.79
624643--624685	20	2.2	20	91	0	68	23	25	20	30	1.99
627524--627572	24	2.0	24	92	0	80	44	10	12	32	1.75
627602--627638	19	1.9	19	89	10	58	18	10	5	64	1.43
627602--627637	18	1.9	19	88	5	56	19	11	5	63	1.46
627606--627670	28	2.4	28	80	14	91	13	12	3	70	1.27
628032--628065	16	2.1	17	88	5	52	14	35	0	50	1.44
628051--628106	28	2.0	28	96	0	103	19	28	1	50	1.58
645351--645379	15	1.9	15	100	0	58	62	13	13	10	1.55
645357--645405	15	3.3	15	88	5	64	63	12	10	14	1.53
649224--649370	45	3.3	42	72	24	122	54	6	36	2	1.40
651292--651406	2	58.5	2	91	3	189	46	0	0	53	1.00
651466--651730	85	3.1	84	88	2	352	32	16	20	31	1.94
652063--652149	44	2.0	44	90	2	140	24	19	24	32	1.98
656405--656504	43	2.3	43	83	6	139	30	19	23	28	1.98
662179--662203	5	5.0	5	100	0	50	60	0	20	20	1.37
668152--668183	3	10.7	3	100	0	64	68	0	0	31	0.90
669672--669777	51	2.1	51	100	0	212	33	17	33	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670180--670244	32	2.0	32	93	0	112	29	13	7	49	1.70
678373--678432	20	3.0	20	73	9	68	35	20	20	25	1.96
679057--679094	20	1.9	20	88	0	58	34	13	18	34	1.89
679097--679130	14	2.4	14	90	0	50	14	14	23	47	1.82
679080--679169	33	2.7	34	87	1	128	18	15	17	47	1.82
680515--680642	42	3.0	42	83	2	159	26	35	12	25	1.92
680580--680680	39	2.5	41	82	4	116	29	37	11	20	1.89
680780--680907	21	6.1	21	83	3	159	17	10	37	34	1.84
681226--681400	21	8.3	21	73	11	126	21	38	13	26	1.91
681263--681370	42	2.6	42	89	0	162	18	39	13	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14