genome.fa.s7956.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3102597

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1578538--1578629	19	5.4	18	71	24	74	8	15	27	48	1.74
1578538--1578661	33	3.8	32	85	3	149	9	16	26	47	1.77
1578709--1579177	93	5.1	93	98	0	904	45	18	12	22	1.83
1580864--1580960	20	5.2	20	72	18	100	46	17	24	11	1.81
1580862--1580926	21	3.1	21	82	4	96	47	15	26	10	1.78
1580911--1580967	14	3.7	14	75	20	60	43	22	24	8	1.81
1580862--1580984	33	3.5	33	90	8	165	46	18	24	10	1.81
1581001--1581057	14	3.7	14	75	20	60	8	24	22	43	1.81
1580985--1581064	33	2.4	33	95	0	142	8	21	22	47	1.78
1581045--1581118	21	3.5	21	80	7	96	14	20	17	47	1.83
1581198--1581268	33	2.2	33	92	0	115	49	16	22	11	1.78
1581648--1581800	20	7.6	20	82	7	175	17	18	27	35	1.94
1581794--1581843	21	2.4	20	80	9	55	26	18	20	36	1.95
1589002--1589052	23	2.2	23	78	0	57	27	7	5	58	1.49
1591907--1592555	39	16.6	39	85	3	824	35	9	14	40	1.78
1591902--1592555	116	5.6	116	90	2	914	35	9	14	40	1.78
1591907--1592563	79	8.4	79	86	5	827	35	9	14	40	1.78
1601779--1601815	3	12.3	3	94	0	65	35	2	0	62	1.10
1602154--1602207	22	2.5	22	93	3	92	18	33	29	18	1.95
1614548--1614619	25	3.1	23	72	14	60	80	0	16	2	0.83
1614565--1614618	8	6.5	8	76	16	56	83	0	14	1	0.73
1614560--1614620	31	1.9	32	87	9	90	80	0	18	1	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1614548--1614619	13	5.2	13	78	18	67	80	0	16	2	0.83
1616710--1617264	113	5.0	113	95	1	940	38	14	18	28	1.90
1617255--1617432	95	1.9	92	80	5	205	37	18	17	26	1.93
1617586--1617693	3	36.3	3	85	9	150	35	1	0	62	1.06
1630277--1630318	19	2.2	19	91	8	68	85	0	14	0	0.59
1630274--1630313	12	3.3	12	85	0	62	87	0	12	0	0.54
1632432--1633086	112	5.8	112	92	3	1021	37	11	19	31	1.88
1633341--1633424	3	28.3	3	96	2	152	34	0	0	65	0.93
1633883--1633918	15	2.4	15	90	9	56	77	2	19	0	0.88
1634778--1634823	13	3.5	13	82	11	58	41	0	0	58	0.98
1635690--1635721	7	4.6	7	92	0	55	28	18	0	53	1.45
1641007--1641058	18	2.7	19	80	16	63	28	23	17	30	1.97
1645328--1645377	18	2.7	19	79	11	59	26	20	28	26	1.99
1656673--1656788	60	1.9	60	83	0	151	32	22	17	27	1.96
1663132--1663183	22	2.4	22	96	0	95	44	28	5	21	1.75
1663908--1663946	20	2.0	20	100	0	78	38	15	5	41	1.69
1665340--1665364	13	1.9	13	100	0	50	72	0	0	28	0.86
1667863--1667899	18	2.1	17	90	5	56	70	0	2	27	1.01
1685170--1685194	12	2.1	12	100	0	50	32	28	24	16	1.96
1688354--1688400	23	2.0	23	88	8	69	38	2	0	59	1.09
1691965--1692016	20	2.7	19	80	14	61	15	0	44	40	1.46
1691965--1692016	19	2.7	20	78	3	61	15	0	44	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691977--1692026	25	2.0	25	84	7	66	18	0	42	40	1.50
1692354--1692415	30	2.1	30	87	6	90	45	12	12	29	1.80
1693678--1693739	29	2.1	29	84	6	79	46	6	16	30	1.72
1701978--1702036	15	3.9	15	100	0	118	27	32	0	40	1.56
1702717--1702785	28	2.4	28	75	15	70	31	23	14	30	1.94
1705869--1706041	89	2.0	88	95	1	310	44	6	10	37	1.67
1712828--1713320	81	6.1	81	89	1	614	30	20	11	37	1.88
1718180--1718228	20	2.5	20	96	3	91	34	12	30	22	1.91
1718321--1718362	20	2.2	19	87	8	59	30	14	26	28	1.95
1722783--1722842	30	2.0	30	86	0	84	30	28	15	26	1.96
1724825--1725159	171	2.0	171	90	1	528	32	16	11	39	1.84
1728815--1729284	57	8.4	57	88	4	656	36	9	16	37	1.82
1735428--1735467	19	2.1	19	85	0	53	37	15	17	30	1.90
1735828--1736303	57	8.4	57	92	0	749	36	10	18	34	1.85
1745102--1745144	21	2.0	21	86	8	61	51	0	6	41	1.29
1745278--1745353	26	3.3	23	75	20	68	51	1	2	44	1.23
1746800--1746838	3	12.7	3	94	5	69	66	0	0	33	0.92
1747023--1747439	73	5.7	73	95	0	708	32	20	19	27	1.97
1747684--1747893	65	3.3	62	77	12	183	30	24	19	25	1.98
1749840--1749879	21	1.9	21	89	0	62	55	7	7	30	1.56
1755317--1755360	21	2.1	21	82	0	52	9	43	15	31	1.79
1757110--1757665	73	7.6	73	94	0	977	31	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1763067--1763112	8	5.6	8	87	5	56	0	19	0	80	0.71
1763067--1763121	17	3.4	17	82	12	71	1	18	0	80	0.81
1763086--1763119	7	4.7	7	92	3	50	2	20	0	76	0.92
1763067--1763105	8	4.6	9	90	9	64	0	17	0	82	0.68
1763271--1763661	193	2.0	195	97	2	750	34	15	17	32	1.92
1767632--1767688	2	30.0	2	86	10	84	50	0	0	49	1.00
1768333--1768375	21	2.0	21	86	8	61	51	0	6	41	1.29
1768509--1768559	22	2.3	23	86	3	68	50	0	3	45	1.20
1770012--1770050	3	12.7	3	94	5	69	66	0	0	33	0.92
1771284--1771332	21	2.2	23	78	10	57	36	18	20	24	1.94
1775100--1775129	13	2.3	13	100	0	60	66	0	0	33	0.92
1775376--1775422	16	3.1	16	75	9	53	74	6	10	8	1.22
1776720--1777010	38	7.5	37	83	12	304	48	4	3	43	1.38
1776720--1777010	37	7.5	38	80	13	287	48	4	3	43	1.38
1776722--1777050	38	8.2	41	76	19	152	48	4	3	44	1.40
1777647--1778746	80	13.4	80	76	8	874	25	18	22	33	1.97
1777647--1778362	244	2.9	244	86	2	949	25	18	22	34	1.96
1777648--1778362	324	2.2	327	86	2	963	25	17	22	34	1.96
1778447--1778476	15	2.0	15	100	0	60	20	33	26	20	1.97
1778464--1778746	84	3.4	83	82	3	354	22	20	24	32	1.98
1779909--1780249	95	3.6	94	91	4	504	30	18	17	33	1.94
1782652--1782680	12	2.3	13	94	5	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1782849--1782889	5	8.2	5	94	0	64	75	0	4	19	0.98
1785423--1785464	19	2.2	19	100	0	84	21	26	4	47	1.70
1786167--1786377	38	5.4	39	72	13	146	44	4	3	47	1.40
1786167--1786297	37	3.4	37	77	6	145	46	5	3	44	1.44
1796433--1796820	184	2.1	184	92	2	638	46	8	2	42	1.48
1798613--1798722	36	3.1	35	80	7	105	33	15	27	23	1.95
1800940--1800983	20	2.1	21	87	4	63	56	2	6	34	1.38
1800949--1800992	21	2.2	20	83	4	52	63	0	4	31	1.14
1801177--1801269	47	2.0	47	93	6	165	52	12	20	13	1.73
1816191--1816326	8	17.1	8	84	13	167	76	1	9	12	1.08
1816317--1816361	11	4.0	11	78	16	56	80	0	15	4	0.87
1817316--1817557	99	2.4	103	87	4	366	38	16	19	26	1.92
1820555--1820604	23	2.2	23	100	0	100	24	8	32	36	1.84
1820699--1820753	22	2.5	22	88	5	76	72	3	0	23	1.00
1820724--1820760	19	1.9	19	88	0	56	78	5	0	16	0.93
1821087--1821348	113	2.3	113	88	3	386	29	20	12	37	1.90
1821288--1821385	39	2.5	40	91	1	162	22	22	8	46	1.77
1821177--1821501	152	2.1	152	85	3	422	26	19	13	40	1.88
1821332--1821972	113	5.7	113	87	3	871	26	18	15	39	1.90
1821329--1821955	339	1.8	339	89	3	974	27	18	15	39	1.90
1821970--1822201	76	3.1	76	94	1	394	33	21	19	25	1.97
1822204--1822529	166	2.0	165	91	1	528	38	12	13	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823044--1823098	22	2.5	22	93	0	101	40	14	10	34	1.81
1825554--1825773	114	1.9	114	89	1	343	30	19	14	36	1.91
1830091--1830129	20	2.0	20	84	0	51	53	7	12	25	1.65
1831723--1831776	28	2.0	27	85	3	72	61	1	5	31	1.30
1832248--1832306	30	2.0	30	86	6	84	50	0	0	49	1.00
1832274--1832507	120	2.0	121	80	5	271	45	8	8	37	1.64
1834058--1834107	3	18.0	3	80	15	54	66	2	0	32	1.03
1834058--1834118	19	3.3	19	84	4	72	68	3	0	27	1.05
1834036--1834107	22	3.3	21	80	7	63	61	1	0	37	1.05
1834059--1834126	19	3.8	18	79	11	61	72	2	0	25	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14