genome.fa.s7956.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3102597

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220224--220265	20	2.2	19	86	4	57	57	4	0	38	1.20
221568--221668	3	33.7	3	91	0	166	64	0	0	34	1.00
229388--229412	3	8.3	3	100	0	50	68	0	32	0	0.90
247536--247613	39	2.0	38	80	7	86	50	1	1	47	1.17
248250--248274	13	1.9	13	100	0	50	36	24	16	24	1.94
248561--248598	18	2.2	18	85	4	51	44	2	0	52	1.14
248589--248678	39	2.3	38	86	3	117	38	11	0	50	1.38
253858--253943	24	3.6	24	90	0	109	13	11	18	55	1.68
255018--255060	16	2.7	16	96	0	77	6	11	23	58	1.57
255130--255162	16	2.1	16	100	0	66	6	12	24	57	1.57
256053--256087	16	2.2	16	100	0	70	42	0	5	51	1.25
256370--256414	18	2.5	18	81	0	54	28	24	6	40	1.80
257622--257671	25	2.0	26	84	11	68	24	16	8	52	1.70
260791--260860	24	2.8	25	79	12	65	20	2	8	68	1.29
260877--260970	33	2.8	33	80	11	84	22	3	12	61	1.45
264870--268432	12	298.2	12	90	2	4486	43	0	31	25	1.55
264870--268432	8	447.4	8	89	2	4486	43	0	31	25	1.55
265938--268576	4	659.8	4	81	0	1470	39	0	34	25	1.57
269271--269315	21	2.1	21	87	0	63	35	11	2	51	1.50
269325--269472	80	1.9	79	88	1	224	41	11	15	31	1.83
269771--269863	45	2.1	45	100	0	186	33	17	15	34	1.91
271772--271927	65	2.4	65	86	3	208	29	21	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273454--273512	22	2.6	23	91	5	102	23	30	27	18	1.98
274103--274253	67	2.3	67	95	0	266	16	27	27	28	1.97
280310--280368	22	2.6	23	91	5	102	23	30	27	18	1.98
280944--281093	66	2.3	66	92	1	246	17	26	28	28	1.97
282629--282658	10	3.1	10	95	4	53	0	30	0	70	0.88
283565--283626	23	2.7	22	75	7	61	32	22	27	17	1.97
285653--285714	23	2.7	22	75	7	61	32	22	27	17	1.97
285970--286020	25	2.0	25	96	0	93	37	9	19	33	1.85
286189--286251	2	32.5	2	93	6	112	50	0	0	49	1.00
287285--287362	20	3.8	20	75	18	70	24	25	19	30	1.98
292340--292371	2	16.0	2	100	0	64	50	0	0	50	1.00
294486--294549	30	2.1	30	94	0	110	28	18	20	32	1.96
295713--295752	21	1.9	21	90	10	64	55	5	7	32	1.50
298701--298784	23	3.7	23	76	9	93	27	25	21	26	1.99
301430--301582	65	2.4	65	83	3	193	30	20	16	32	1.95
310647--310686	20	2.0	20	85	5	53	45	22	7	25	1.78
315341--315377	18	2.1	18	94	0	65	59	5	5	29	1.42
321485--321542	23	2.5	23	97	0	107	32	18	25	22	1.97
322148--322204	21	2.8	19	73	21	53	29	10	17	42	1.83
322262--322345	23	3.7	23	90	0	123	19	28	19	33	1.96
340150--340180	2	15.5	2	100	0	62	48	0	0	51	1.00
342269--342341	8	9.1	8	72	14	53	65	0	4	30	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342312--342351	12	3.2	12	79	6	53	65	0	5	30	1.14
342284--342364	25	3.4	24	80	14	89	67	0	6	25	1.13
342330--342375	24	1.9	24	86	0	65	73	0	4	21	1.00
342476--342529	22	2.6	20	77	11	63	55	9	12	22	1.65
343614--343694	42	1.9	42	85	5	110	49	2	2	45	1.28
343657--343703	24	1.9	24	86	4	67	46	4	4	44	1.42
343647--344064	36	11.4	37	83	7	435	44	5	4	46	1.46
343647--344072	37	11.7	35	80	12	341	44	5	4	46	1.46
343666--344064	73	5.4	72	86	6	471	43	5	4	45	1.48
344890--345319	85	5.1	84	87	2	601	25	15	20	37	1.93
344900--345319	170	2.5	170	91	0	671	26	16	20	36	1.93
346162--346200	14	2.8	14	80	11	53	74	0	0	25	0.82
346152--346200	19	2.6	19	81	12	57	77	0	0	22	0.77
346200--346428	36	6.2	35	79	13	187	46	4	3	45	1.40
346243--346290	24	2.0	24	87	4	69	47	6	4	41	1.48
346412--346458	2	23.5	2	100	0	94	48	0	0	51	1.00
346200--346428	72	3.1	73	77	13	238	46	4	3	45	1.40
347049--347090	16	2.5	17	84	11	59	30	11	26	30	1.92
351105--351190	18	4.9	17	77	5	82	33	10	11	44	1.75
351102--351192	17	5.2	17	74	10	76	32	9	13	43	1.76
353438--353557	35	3.3	37	87	8	176	44	20	4	31	1.70
353489--353549	21	3.2	21	63	29	55	44	21	3	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354721--354882	81	2.0	81	98	0	315	24	24	13	37	1.91
357698--357731	16	2.1	16	88	0	50	35	23	8	32	1.86
361771--361808	14	2.7	14	92	8	60	13	13	15	57	1.65
362079--362105	13	2.1	13	100	0	54	22	7	7	62	1.46
367551--367616	29	2.2	30	91	2	107	33	28	18	19	1.95
368037--368071	15	2.3	15	90	0	52	34	22	0	42	1.54
368477--368697	64	3.5	64	83	7	236	26	19	20	33	1.96
373105--373197	30	3.1	30	90	1	143	32	26	20	20	1.97
373618--373652	15	2.3	15	90	0	52	34	22	0	42	1.54
374066--374286	64	3.5	63	81	8	216	28	19	19	33	1.96
377692--377730	14	2.6	16	84	8	55	5	28	23	43	1.75
379820--379894	38	2.0	36	82	10	89	48	4	2	45	1.35
380442--380496	25	2.2	25	93	0	92	45	0	10	43	1.39
381298--381337	16	2.4	17	83	4	55	22	5	25	47	1.71
381878--381965	23	3.8	23	71	14	81	18	25	25	31	1.97
383937--383970	2	17.0	2	100	0	68	50	0	0	50	1.00
387054--387145	45	2.0	45	100	0	184	29	13	16	41	1.86
387305--387467	84	1.9	84	82	8	206	44	13	17	24	1.84
390827--390876	23	2.2	23	85	0	64	36	10	18	36	1.84
390836--390884	23	2.1	23	92	0	80	38	8	20	32	1.82
390983--391683	200	3.5	198	81	6	772	30	15	14	39	1.87
394946--394993	20	2.4	20	75	6	53	18	20	10	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394734--395133	180	2.2	180	85	4	560	28	17	14	39	1.89
398050--398101	24	2.2	24	85	0	68	38	21	17	23	1.93
398828--398865	16	2.5	15	88	12	60	68	0	2	28	1.03
399092--399152	20	3.0	20	87	0	77	29	9	27	32	1.89
399099--399170	20	3.6	20	79	7	83	22	9	31	36	1.87
399459--399549	39	2.3	39	79	3	103	39	19	19	20	1.93
399828--399884	4	14.2	4	88	0	87	49	22	3	24	1.66
399882--400102	2	110.5	2	99	0	433	50	49	0	0	1.00
400364--400494	41	3.2	40	72	16	106	36	14	20	28	1.92
400386--400507	42	2.9	39	71	19	95	36	15	18	29	1.92
400520--400680	41	4.0	40	83	7	198	36	14	17	31	1.90
400502--400672	82	2.1	82	82	3	200	37	14	16	32	1.88
400520--400680	82	2.0	82	87	2	234	36	14	17	31	1.90
401967--402277	41	7.5	41	79	6	304	27	17	18	36	1.93
401968--402283	83	3.8	80	78	8	294	28	17	18	36	1.93
401967--402275	166	1.9	166	84	4	417	27	17	18	36	1.93
402272--402359	43	2.1	42	87	4	124	35	12	12	39	1.81
410369--410421	21	2.5	21	76	11	72	41	20	37	0	1.53
410850--411104	43	5.9	43	77	6	223	32	25	14	27	1.94
410850--411104	129	2.0	129	79	6	275	32	25	14	27	1.94
412232--412261	4	7.5	4	100	0	60	76	0	0	23	0.78
418059--418340	43	6.6	42	83	8	266	32	23	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418059--418340	86	3.3	82	83	10	318	32	23	22	21	1.98
418059--418340	128	2.2	129	85	5	374	32	23	22	21	1.98
422310--422711	42	9.7	41	81	5	407	32	18	21	27	1.96
422310--422692	83	4.6	83	83	7	422	32	18	21	27	1.97
422310--422692	125	3.1	124	89	1	545	32	18	21	27	1.97
425916--426090	29	6.2	29	72	18	122	50	1	1	47	1.16
426043--426089	22	2.1	23	84	4	60	51	0	2	46	1.13
426068--426123	23	2.3	23	84	6	67	44	0	1	53	1.11
426330--426410	42	1.9	42	87	0	117	51	19	8	19	1.72
427983--428188	113	1.8	112	90	5	317	54	1	7	36	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14