genome.fa.s7956.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3102597

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1834090--1834127	18	2.1	18	85	9	51	81	5	0	13	0.85
1834380--1834416	18	2.2	17	90	9	58	43	10	0	45	1.39
1843459--1844161	351	2.0	352	99	0	1399	23	18	23	34	1.96
1848442--1848468	5	5.4	5	100	0	54	22	18	40	18	1.91
1850607--1850640	14	2.4	14	90	0	50	41	20	17	20	1.91
1851252--1851376	31	4.0	31	94	2	207	37	23	19	20	1.94
1854958--1854991	14	2.4	14	90	0	50	41	20	17	20	1.91
1855596--1855720	31	4.0	31	92	2	198	36	23	19	20	1.95
1856280--1856332	19	3.0	19	70	25	53	18	30	32	18	1.96
1859948--1860072	31	4.0	31	94	2	207	37	23	19	20	1.94
1862180--1862335	65	2.4	64	82	5	181	28	18	17	35	1.94
1868021--1868125	44	2.4	44	87	1	149	30	22	20	26	1.98
1868610--1868653	13	3.3	13	87	3	61	36	11	9	43	1.72
1870394--1870427	12	2.7	13	86	9	52	44	5	5	44	1.52
1881423--1881447	12	2.1	12	100	0	50	16	0	0	84	0.63
1881383--1881450	32	2.2	30	78	5	73	11	8	1	77	1.04
1881760--1882917	513	2.2	515	96	1	2108	26	16	18	39	1.91
1886401--1886430	12	2.6	11	90	10	51	80	0	20	0	0.72
1890714--1890744	14	2.2	14	100	0	62	32	16	12	38	1.86
1891476--1891558	24	3.4	24	74	9	69	39	16	18	25	1.91
1892845--1893014	89	1.9	91	88	2	263	28	25	24	20	1.99
1895724--1895753	14	2.2	14	94	5	53	33	26	26	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1895746--1895787	13	3.2	13	82	0	57	16	19	42	21	1.89
1897494--1897579	37	2.4	37	86	5	122	32	4	22	40	1.74
1897980--1898015	18	2.1	18	90	10	58	36	0	19	44	1.51
1902064--1902142	37	2.2	36	84	4	97	36	3	17	41	1.68
1904504--1904569	30	2.2	30	91	0	105	13	25	22	37	1.91
1912733--1912876	60	2.4	60	78	8	159	32	23	3	40	1.72
1913007--1913191	60	3.1	58	75	7	165	39	4	23	32	1.74
1919465--1919884	159	2.6	158	87	2	565	28	18	7	46	1.75
1920777--1920823	18	2.8	16	78	12	58	44	4	6	44	1.49
1920837--1920894	24	2.4	25	77	5	66	48	0	3	48	1.18
1924308--1924346	20	2.0	20	89	0	60	30	33	15	20	1.94
1924469--1924517	19	2.6	19	84	9	57	24	28	20	26	1.99
1928392--1928421	2	14.5	2	93	6	51	46	0	3	50	1.18
1928711--1928754	2	22.0	2	100	0	88	50	0	0	50	1.00
1933769--1933832	32	2.0	32	87	0	92	35	25	10	28	1.89
1935462--1935503	13	3.3	13	83	9	52	61	2	4	30	1.29
1935532--1935601	7	9.7	7	70	11	52	75	1	2	20	1.00
1935532--1935629	41	2.5	40	79	11	105	72	1	5	21	1.10
1935533--1935617	38	2.1	38	82	8	98	74	1	5	18	1.09
1935670--1935711	18	2.3	18	91	0	66	71	0	7	21	1.09
1946454--1946517	7	9.3	7	78	11	62	71	1	3	23	1.08
1946447--1946517	35	1.9	36	86	11	99	71	1	5	21	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946557--1946599	18	2.4	18	88	0	59	69	0	6	23	1.12
1947711--1947740	15	2.0	15	93	0	51	50	16	0	33	1.46
1947904--1949885	4	495.2	4	99	0	3885	25	0	24	49	1.52
1954945--1955048	33	3.2	32	80	4	100	34	18	25	21	1.96
1955900--1955954	22	2.6	21	85	5	83	61	0	7	30	1.23
1957503--1957545	22	2.0	22	85	0	59	74	0	13	11	1.07
1960023--1960052	2	15.0	2	100	0	60	50	0	0	50	1.00
1962223--1962287	32	2.0	32	100	0	130	30	3	33	32	1.73
1966803--1966836	18	1.9	18	88	5	52	32	17	29	20	1.96
1966926--1966976	22	2.4	21	81	15	61	37	17	17	27	1.93
1966926--1966977	20	2.5	21	84	12	63	36	17	17	28	1.92
1971136--1971271	65	2.1	64	83	6	168	33	17	21	27	1.96
1971613--1971646	13	2.6	13	90	9	52	38	5	8	47	1.59
1973811--1973856	20	2.3	20	100	0	92	26	17	26	30	1.97
1973858--1973993	23	6.1	23	80	13	158	29	22	21	26	1.99
1973848--1973937	44	2.0	44	93	0	153	28	24	20	26	1.99
1973858--1973993	67	2.0	67	94	0	236	29	22	21	26	1.99
1973900--1974012	44	2.5	44	85	5	138	30	21	20	28	1.98
1980863--1980995	65	2.1	64	85	4	178	30	18	22	28	1.97
1983392--1983441	18	2.6	19	84	15	68	30	18	26	26	1.98
1985149--1985346	98	2.0	99	99	1	389	39	10	9	40	1.71
1987742--1987774	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1988527--1989000	243	2.0	243	96	0	885	26	16	23	33	1.96
1991439--1991479	12	3.4	12	86	0	55	60	0	2	36	1.10
1991439--1991495	25	2.3	25	87	6	80	61	0	3	35	1.13
1991448--1991494	13	3.7	13	78	13	53	63	0	4	31	1.13
1992044--1992082	17	2.3	17	100	0	78	35	28	12	23	1.91
1993318--1993369	9	5.8	9	77	8	61	44	28	11	15	1.81
1993322--1993379	18	3.2	18	76	9	73	41	29	10	18	1.84
1994778--1994927	65	2.3	64	86	6	207	30	18	22	28	1.98
1994778--1994979	64	3.1	64	78	11	207	27	17	23	31	1.97
1997664--1997704	21	2.0	21	95	0	73	19	21	19	39	1.93
1997671--1997716	21	2.2	21	84	0	56	23	19	17	39	1.92
1997702--1997755	24	2.2	24	93	0	90	35	18	22	24	1.96
1997710--1997759	24	2.1	24	100	0	100	34	22	24	20	1.97
2001522--2001561	21	1.9	21	94	0	71	35	7	2	55	1.42
2003390--2003523	64	2.1	64	85	12	179	26	20	23	29	1.98
2004523--2004952	214	2.0	215	99	0	853	34	15	18	31	1.92
2012889--2012926	13	2.7	14	88	8	51	78	0	7	13	0.94
2014984--2015091	41	2.6	41	77	2	110	28	20	18	32	1.96
2015226--2015296	22	3.3	22	73	15	85	23	19	25	30	1.98
2015207--2015367	42	3.8	41	85	4	198	25	22	22	29	1.99
2015219--2015282	20	3.1	20	70	24	60	23	25	23	28	2.00
2015969--2016647	139	4.9	139	83	4	784	37	17	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2024577--2024669	46	2.0	46	95	0	168	21	19	25	33	1.97
2030099--2030148	20	2.5	20	96	0	91	44	22	10	24	1.83
2035042--2035194	65	2.4	64	82	5	175	30	22	15	31	1.95
2043609--2043713	24	4.4	24	81	0	120	52	16	10	20	1.73
2052868--2052909	20	2.1	20	100	0	84	35	23	9	30	1.87
2055962--2056022	23	2.7	23	86	0	95	29	26	26	18	1.98
2056672--2056830	64	2.5	65	83	8	193	27	20	20	32	1.97
2059452--2059614	36	4.5	36	88	0	227	29	24	15	30	1.95
2059797--2059845	22	2.2	22	82	7	64	24	22	22	30	1.99
2065794--2065897	54	1.9	54	98	0	199	46	7	10	35	1.67
2065868--2065971	45	2.3	45	83	3	129	28	7	20	43	1.79
2065891--2065993	45	2.3	45	83	3	127	21	7	28	42	1.80
2074376--2074641	58	4.7	57	85	4	321	34	19	10	35	1.86
2074967--2075037	22	3.5	20	76	14	74	29	28	15	26	1.96
2078277--2078752	238	2.0	238	99	0	936	30	24	14	30	1.95
2080897--2081175	58	4.8	58	90	0	434	34	18	10	35	1.86
2081507--2081578	19	3.6	19	80	12	81	27	27	15	29	1.96
2084514--2084672	40	4.0	40	97	0	300	22	17	27	32	1.96
2084772--2084894	46	2.7	44	88	6	185	39	6	22	30	1.79
2090912--2091185	58	4.7	58	88	0	415	36	19	9	34	1.85
2091514--2091558	19	2.4	19	96	0	81	26	31	15	26	1.96
2091580--2091628	20	2.5	19	83	12	55	18	28	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2092448--2092625	89	2.0	89	100	0	356	31	5	11	51	1.60
2093308--2093381	25	3.0	25	82	11	82	41	5	1	51	1.33
2093295--2093404	27	4.2	27	79	16	108	42	3	0	52	1.25
2093343--2093431	27	3.0	29	80	16	87	44	1	1	52	1.15
2095829--2095921	7	13.3	7	74	8	55	46	32	2	19	1.62
2095807--2095921	14	8.2	14	68	11	74	45	30	1	22	1.63
2095808--2095889	21	3.9	21	75	0	74	48	26	0	24	1.51
2095829--2095899	35	2.0	35	86	5	99	47	32	0	19	1.50
2097306--2097389	23	3.7	23	83	1	98	32	16	22	28	1.96
2097306--2097389	11	7.5	11	77	5	87	32	16	22	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14