genome.fa.s7956.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3102597

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944332--2944385	28	1.9	28	85	7	74	68	0	1	29	1.00
2944317--2944390	3	24.3	3	77	20	50	70	0	1	28	0.96
2944394--2944438	24	1.9	23	90	4	72	53	6	0	40	1.27
2944400--2944802	36	11.1	35	85	8	456	44	6	3	45	1.47
2944770--2944829	24	2.4	26	88	5	88	46	10	0	43	1.37
2945687--2945859	86	2.0	86	88	2	258	19	23	26	30	1.98
2946991--2947184	95	2.0	95	87	0	280	30	18	15	35	1.92
2949364--2949528	60	2.8	60	78	9	160	44	4	18	33	1.69
2950021--2950101	41	2.0	41	97	0	153	32	11	12	44	1.77
2950877--2951027	62	2.5	61	82	1	176	41	17	11	29	1.85
2953007--2953202	98	2.0	96	97	2	365	31	26	11	30	1.92
2953463--2953623	81	2.0	81	88	2	243	32	13	17	36	1.89
2953618--2953648	2	15.5	2	100	0	62	51	0	0	48	1.00
2959757--2959803	24	2.0	24	100	0	94	23	17	8	51	1.72
2959865--2959922	29	2.0	29	96	0	107	34	8	27	29	1.87
2961026--2961063	10	4.0	9	87	12	58	44	0	2	52	1.14
2962091--2962156	23	2.8	23	81	9	71	48	4	3	43	1.38
2966241--2966461	59	3.8	59	87	1	311	32	26	14	26	1.95
2967899--2968357	229	2.0	229	97	0	864	43	11	17	27	1.83
2977941--2978113	60	2.8	60	83	9	201	44	4	17	34	1.67
2979435--2979500	28	2.3	28	89	2	96	33	21	19	25	1.97
2981564--2981645	31	2.7	30	85	5	112	36	17	8	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2982258--2982308	4	12.8	4	79	8	59	50	19	1	27	1.58
2987693--2987742	16	3.1	16	80	11	57	54	6	0	40	1.25
2988594--2988693	49	2.0	49	80	0	110	32	19	11	38	1.86
2988903--2989070	81	2.0	83	88	2	250	32	13	17	36	1.88
2991619--2991703	25	3.6	23	80	13	93	49	1	1	48	1.16
2992568--2992599	2	16.0	2	100	0	64	50	0	0	50	1.00
2997238--2997281	22	2.0	22	86	8	63	34	25	13	27	1.93
2997716--2998007	79	3.7	79	86	1	406	37	10	22	29	1.88
2997766--2997907	34	3.9	34	74	18	140	36	11	22	28	1.90
2997798--2997951	45	3.7	41	73	20	142	35	12	23	28	1.91
3000513--3000539	2	13.5	2	100	0	54	0	0	48	51	1.00
3002262--3002547	79	3.6	79	87	0	403	36	10	23	30	1.88
3002520--3002647	46	2.8	46	89	1	202	45	10	21	23	1.82
3002558--3002635	20	3.6	20	70	18	66	44	10	24	20	1.82
3004167--3004232	23	2.9	23	86	4	89	25	22	18	33	1.97
3009704--3009790	42	2.1	42	95	0	156	20	25	10	43	1.83
3019334--3019382	21	2.3	22	83	16	59	24	14	28	32	1.94
3024295--3024344	20	2.5	20	83	6	57	32	14	32	22	1.93
3024819--3024849	15	2.0	16	93	6	55	32	3	19	45	1.66
3028941--3029545	298	2.0	306	96	2	1136	28	14	19	38	1.90
3031107--3031148	15	2.8	15	92	0	66	11	11	16	59	1.61
3036240--3036279	18	2.2	18	95	0	71	45	15	0	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3036706--3036981	9	27.8	9	66	24	87	72	1	8	17	1.16
3036785--3036851	20	3.5	19	77	20	68	73	0	7	19	1.07
3036770--3036851	19	4.4	18	77	11	76	74	0	6	19	1.02
3036735--3036875	21	6.7	21	70	21	66	72	0	9	17	1.11
3036885--3036986	41	2.6	39	77	13	100	75	3	4	15	1.12
3036891--3036948	24	2.5	24	75	10	57	75	3	6	13	1.13
3036705--3037003	52	5.8	50	72	17	152	72	2	8	17	1.19
3036706--3036987	14	19.6	14	67	21	97	72	1	8	17	1.17
3039877--3039998	38	3.2	38	78	5	131	27	21	10	40	1.86
3041043--3041072	12	2.5	12	100	0	60	13	53	16	16	1.73
3042142--3042290	76	2.0	76	86	0	208	25	16	12	45	1.82
3047022--3047081	3	20.0	3	100	0	120	33	0	0	66	0.92
3048548--3048594	3	15.7	3	82	8	60	36	0	0	63	0.94
3050688--3050845	14	10.9	14	71	16	83	15	6	0	77	1.01
3050681--3050847	10	17.1	9	68	18	68	14	6	0	77	0.99
3050685--3050732	16	3.1	16	91	5	73	14	0	0	85	0.60
3050759--3050840	34	2.3	36	85	10	107	9	9	1	79	1.00
3050754--3050851	38	2.7	36	79	9	108	10	9	1	79	0.98
3050783--3050881	31	3.1	31	82	10	103	15	6	2	76	1.06
3050789--3050871	38	2.2	37	79	12	89	15	4	1	78	0.98
3052544--3052569	7	3.7	7	100	0	52	15	15	15	53	1.73
3053811--3053884	19	3.9	18	78	13	69	78	4	16	1	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3053813--3053895	14	5.8	14	74	20	66	78	4	15	1	0.98
3054959--3055078	32	3.8	32	86	2	170	30	15	22	32	1.94
3057203--3057241	21	1.9	20	89	5	60	35	0	0	64	0.94
3057207--3057245	18	2.2	17	86	4	51	35	0	0	64	0.94
3058202--3058227	3	8.7	3	100	0	52	34	0	0	65	0.93
3058246--3058291	21	2.3	19	85	14	58	15	4	0	80	0.86
3058353--3058398	15	2.9	15	90	9	65	6	15	2	76	1.09
3058371--3058419	24	2.2	23	82	10	57	6	14	0	79	0.91
3058310--3058451	39	3.7	37	73	11	117	12	9	2	76	1.11
3061918--3061983	23	2.9	23	79	0	87	24	15	16	43	1.86
3065811--3065863	21	2.5	21	84	0	70	20	26	18	33	1.96
3065853--3065944	20	4.6	20	84	8	116	39	20	19	20	1.93
3066510--3066621	19	6.1	19	83	12	153	10	23	18	47	1.80
3066532--3066621	33	2.5	34	89	10	128	10	23	18	47	1.79
3068296--3068671	94	4.1	93	93	2	598	21	12	18	47	1.81
3068763--3068824	20	3.2	20	86	4	99	50	17	22	9	1.75
3068761--3068884	33	3.5	35	82	11	139	48	22	20	8	1.76
3068787--3068884	33	2.9	33	89	1	151	47	25	19	7	1.74
3068853--3068890	20	1.9	20	100	0	76	50	28	15	5	1.66
3068896--3069043	19	7.9	19	75	11	108	13	18	20	47	1.82
3068896--3069041	39	3.9	38	78	11	124	12	19	20	47	1.81
3069496--3069556	21	3.0	20	71	7	59	22	37	19	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3070906--3070941	14	2.6	14	95	0	63	33	0	22	44	1.53
3071048--3071101	19	2.8	19	88	2	72	48	22	16	12	1.80
3071120--3071269	19	8.7	18	70	22	101	12	24	18	45	1.83
3071122--3071249	33	3.9	33	97	0	238	11	24	18	45	1.83
3071144--3071231	14	5.6	14	70	23	59	11	25	19	44	1.84
3071243--3071315	20	3.6	21	70	17	64	23	19	23	34	1.97
3073755--3073808	24	2.2	24	93	0	90	40	20	18	20	1.91
3073755--3073822	24	2.8	24	84	0	64	38	20	17	23	1.93
3074670--3074940	20	13.3	21	81	6	220	31	18	21	29	1.96
3074681--3074835	41	3.8	41	89	5	219	34	17	21	25	1.95
3074670--3074918	41	6.1	40	82	6	191	31	18	20	29	1.96
3074894--3074939	21	2.2	21	88	0	65	36	17	28	17	1.92
3081406--3081439	2	17.0	2	87	0	50	50	5	0	44	1.26
3083393--3083451	20	3.0	20	95	5	102	30	18	11	38	1.87
3084583--3084630	20	2.4	20	89	0	78	37	37	14	10	1.81
3086996--3087048	21	2.5	21	96	0	97	47	15	0	37	1.45
3088596--3088691	37	2.6	37	98	0	183	22	22	35	18	1.96
3089171--3089337	92	1.8	91	86	1	244	30	2	14	52	1.57
3091232--3091270	16	2.4	16	91	4	60	46	2	7	43	1.46
3091305--3091432	48	2.7	48	84	4	163	40	12	4	42	1.64
3091566--3091597	17	1.9	17	93	6	57	53	0	6	40	1.26
3092019--3092094	28	2.7	28	81	4	91	43	7	2	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3095699--3095749	21	2.4	21	96	0	93	31	21	15	31	1.95
3098894--3099270	173	2.2	172	93	1	639	36	19	11	32	1.89
3098895--3099280	57	6.7	57	88	4	562	35	20	11	32	1.88
3099629--3099682	19	2.6	22	75	21	62	29	18	16	35	1.93
3099706--3099777	20	3.7	20	92	3	112	18	30	16	34	1.93
3099707--3099793	20	4.6	20	94	2	110	19	29	17	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!