genome.fa.s7979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4780--4880	6	17.2	6	92	4	161	2	15	49	31	1.60
6034--6064	14	2.2	14	94	0	53	51	6	22	19	1.69
8124--8170	23	2.1	22	88	4	67	4	31	4	59	1.36
26919--26977	27	2.2	27	93	0	100	28	5	15	50	1.65
28161--28604	222	2.0	222	86	1	622	47	16	14	21	1.82
30137--30168	2	16.0	2	93	0	55	53	0	0	46	1.00
30792--30862	31	2.3	31	85	2	97	26	11	25	36	1.90
33396--33460	18	3.6	18	87	4	103	18	50	20	10	1.76
33442--33481	8	5.5	8	77	22	52	15	40	25	20	1.90
33437--33481	13	3.3	13	90	6	63	15	42	24	17	1.88
34793--34828	18	2.0	18	88	0	54	52	0	16	30	1.44
35912--36020	24	4.5	24	75	4	103	20	15	16	47	1.82
38155--38194	8	5.5	8	77	22	52	15	40	25	20	1.90
38150--38194	13	3.3	13	90	6	63	15	42	24	17	1.88
39506--39541	18	2.0	18	88	0	54	52	0	16	30	1.44
40624--40732	24	4.5	24	74	8	96	21	15	15	47	1.82
41922--42097	87	2.0	87	98	0	343	39	10	19	30	1.85
52511--52543	14	2.5	13	86	13	50	48	24	21	6	1.72
52518--52544	14	1.9	14	100	0	54	44	29	18	7	1.77
54516--54558	19	2.3	19	95	0	77	32	32	9	25	1.88
54598--54632	18	1.9	18	88	0	52	54	22	2	20	1.58
54803--54913	20	5.8	20	76	12	99	33	21	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54803--54941	74	1.9	74	83	3	181	35	20	17	26	1.95
54811--54945	34	3.8	34	75	12	110	35	22	17	24	1.95
54952--55009	20	2.9	21	77	10	68	12	15	27	44	1.82
55084--55188	36	3.2	36	67	23	111	52	16	3	27	1.61
55061--55296	63	3.5	63	86	10	276	50	16	3	29	1.62
55256--55324	28	2.5	28	100	0	138	52	14	5	27	1.64
57169--57211	19	2.2	20	91	4	70	48	23	13	13	1.79
57355--57423	20	3.5	20	80	7	86	18	20	24	36	1.95
59323--59405	20	4.2	20	81	3	96	40	22	18	18	1.91
59320--59394	39	1.9	39	97	0	141	46	22	17	13	1.82
59774--59816	22	2.0	21	86	8	61	23	18	41	16	1.89
59956--60033	21	3.7	21	89	3	122	19	14	21	44	1.85
60096--60132	19	1.9	19	88	0	56	21	13	29	35	1.92
61642--61668	2	13.5	2	100	0	54	51	0	0	48	1.00
68172--68207	12	2.9	12	91	4	54	30	0	2	66	1.06
73465--73505	16	2.6	16	88	0	64	41	7	17	34	1.77
98669--98763	20	4.8	19	75	15	86	16	27	27	28	1.97
98690--98769	10	8.3	10	78	19	82	15	30	28	26	1.96
98670--98769	30	3.4	29	84	10	123	16	29	27	28	1.97
98689--98767	19	4.1	19	80	16	90	16	27	29	26	1.97
98669--98763	39	2.4	38	84	11	129	16	27	27	28	1.97
105967--106032	17	3.8	18	78	9	84	22	51	22	3	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105966--106038	34	2.1	34	97	0	137	21	49	21	6	1.73
105985--106038	17	3.2	17	79	10	74	20	50	22	7	1.73
109127--109269	64	2.2	64	85	8	184	34	16	20	27	1.95
109145--109269	64	1.9	65	88	6	191	35	16	20	28	1.94
110623--110685	21	3.0	21	90	4	99	25	26	23	23	2.00
110622--110693	22	3.3	22	88	3	110	26	25	20	27	1.99
113104--113159	2	27.5	2	96	3	103	50	0	1	48	1.11
114099--114259	64	2.5	65	85	7	195	33	18	21	27	1.96
115633--115695	21	3.0	21	88	4	90	26	26	22	23	2.00
115639--115698	22	2.8	22	92	2	95	25	26	23	25	2.00
117495--117534	21	1.9	21	94	0	71	42	12	17	27	1.85
118269--118337	23	3.0	23	80	0	84	31	24	24	18	1.98
120920--121010	45	2.0	46	89	2	139	29	26	17	26	1.98
128991--129081	45	2.0	46	86	2	130	27	25	18	28	1.98
131463--131653	100	1.9	100	87	0	283	24	17	15	42	1.88
132185--132222	20	1.9	20	88	0	58	42	10	21	26	1.85
134561--134601	21	2.0	21	100	0	82	41	19	14	24	1.89
135696--135788	40	2.3	40	81	5	107	40	19	20	19	1.91
136465--136546	29	2.8	29	94	1	137	32	14	9	42	1.79
139205--139286	29	2.8	29	94	1	137	32	14	9	42	1.79
141366--141399	7	4.9	7	96	0	59	14	2	0	82	0.79
142248--142426	70	2.6	70	97	0	331	19	15	12	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142262--142368	34	3.1	34	67	28	98	19	13	12	55	1.69
143509--143553	24	2.0	23	86	8	65	71	0	6	22	1.09
152221--152294	24	3.0	24	84	5	96	18	12	13	55	1.69
152447--152522	32	2.4	31	80	8	91	13	19	31	35	1.90
153212--153258	21	2.2	21	80	0	58	21	27	14	36	1.93
153254--153312	20	3.0	20	94	0	100	37	22	20	20	1.95
153301--153345	20	2.3	20	88	3	65	24	20	22	33	1.97
153254--153336	40	2.1	40	82	6	98	33	22	19	24	1.97
154220--154273	24	2.2	24	90	0	81	22	18	18	40	1.91
156801--156959	19	8.8	19	71	16	115	46	17	22	13	1.83
156795--156895	39	2.6	38	83	9	114	45	18	20	14	1.85
156868--156960	33	2.8	33	93	0	150	44	18	24	12	1.85
156966--157004	19	2.1	19	95	0	69	12	15	23	48	1.79
156997--157051	14	3.6	14	73	21	56	10	23	20	45	1.82
156976--157069	33	2.8	33	95	3	163	13	22	19	44	1.85
156971--157069	19	5.7	19	69	24	76	13	22	19	45	1.84
158563--158629	21	3.2	21	70	4	55	20	20	34	23	1.97
159153--159249	42	2.3	42	96	0	176	18	14	36	30	1.91
160537--160592	20	2.8	20	81	10	78	39	19	23	17	1.92
160577--160650	33	2.2	33	85	0	94	45	18	21	13	1.84
160670--160725	21	2.7	21	81	8	53	14	19	17	48	1.81
160698--160748	20	2.5	20	90	0	75	13	13	21	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161306--161498	20	9.6	20	79	6	219	18	19	25	37	1.94
161308--161498	40	4.7	40	93	1	319	18	18	25	37	1.93
161507--161559	20	2.7	20	88	5	72	16	18	20	43	1.88
161305--161559	121	2.1	121	86	4	354	18	18	24	38	1.93
161371--161559	101	1.9	101	81	4	229	19	18	23	39	1.93
162207--162237	16	1.9	16	93	0	53	61	22	9	6	1.50
162305--162335	14	2.2	14	94	0	53	58	25	12	3	1.50
162624--162684	10	6.3	10	70	14	56	57	11	14	16	1.65
162623--162702	24	3.3	24	82	3	90	56	13	13	16	1.68
162634--162699	14	5.0	14	78	14	77	56	13	15	15	1.69
162626--162699	38	1.9	38	94	0	130	56	13	13	16	1.67
165579--165680	34	2.8	37	88	10	158	43	14	13	28	1.84
166074--166116	18	2.5	17	85	7	61	25	4	2	67	1.22
168668--168707	18	2.2	18	100	0	80	20	32	12	35	1.90
169227--169265	8	5.0	8	84	6	53	10	17	12	58	1.61
170418--170451	16	2.1	16	89	10	52	76	8	14	0	1.01
170440--170468	12	2.3	13	94	5	51	82	6	10	0	0.83
170481--170523	22	2.0	21	86	9	59	74	9	13	2	1.16
171149--171219	22	3.2	22	95	0	124	33	23	14	28	1.94
172124--172405	36	8.0	36	79	8	312	25	19	14	40	1.90
172082--172405	72	4.6	73	76	10	239	26	19	15	38	1.91
172180--172368	102	1.9	102	88	2	290	26	19	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172144--172468	138	2.4	137	83	2	436	27	20	12	39	1.89
172380--172536	68	2.4	68	83	3	203	31	22	9	36	1.86
172688--172754	29	2.3	28	74	23	66	43	8	17	29	1.80
173180--174221	105	10.0	105	94	1	1707	33	26	17	22	1.96
174760--174861	34	2.8	37	89	10	167	43	14	14	27	1.85
174760--174895	37	3.8	35	84	9	168	41	13	14	29	1.85
175256--175295	18	2.3	18	83	8	57	25	5	2	67	1.23
175790--175823	2	17.0	2	93	0	59	47	0	0	52	1.00
178101--178147	13	3.5	13	77	13	51	55	2	2	40	1.24
179586--179677	3	30.7	3	95	0	166	64	0	2	33	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13