genome.fa.s7979.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179988--180643	113	5.8	113	93	1	1068	29	19	13	38	1.89
181441--181713	83	3.2	83	92	3	431	35	21	13	28	1.92
182844--182885	8	5.1	8	85	5	57	0	16	0	83	0.65
182844--182879	17	2.1	17	94	0	63	0	13	0	86	0.58
182846--182891	17	2.5	20	86	10	62	0	19	0	80	0.71
193538--193572	17	2.1	17	88	0	52	60	0	5	34	1.21
194223--194269	13	3.5	13	77	13	51	55	2	2	40	1.24
195687--195754	3	22.7	3	96	0	127	64	0	1	33	1.02
195990--196159	85	2.0	86	86	6	236	46	18	14	20	1.84
197413--197471	27	2.1	29	81	6	68	33	10	13	42	1.78
198161--198227	3	22.3	3	100	0	134	32	0	67	0	0.91
198503--198553	11	4.4	11	73	22	50	60	0	0	39	0.97
201716--201760	22	2.0	22	83	8	56	42	8	20	28	1.82
207276--207317	2	21.0	2	100	0	84	50	0	0	50	1.00
208569--208650	20	4.2	19	78	7	76	29	14	20	35	1.93
211117--211371	90	2.9	89	90	5	410	45	5	12	36	1.66
211763--211822	26	2.4	25	78	10	59	50	1	3	45	1.28
230135--230193	21	2.8	21	89	0	82	28	28	25	16	1.97
230637--230662	13	2.0	13	100	0	52	30	0	23	46	1.53
230786--230873	39	2.3	39	100	0	176	21	30	21	26	1.98
234816--234916	52	1.9	54	85	4	143	21	27	14	35	1.93
235279--235358	24	3.3	24	98	0	151	11	43	11	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240937--240977	5	8.2	5	88	0	55	0	34	0	65	0.93
240937--240977	15	2.7	15	92	0	64	0	34	0	65	0.93
240934--240976	10	4.4	10	91	2	61	0	30	0	69	0.88
242705--242756	2	26.5	2	96	3	97	50	0	0	50	1.00
243889--243933	18	2.5	18	85	0	63	42	15	20	22	1.89
247762--247792	15	2.1	15	93	0	53	45	0	0	54	0.99
247952--247989	20	1.9	20	88	0	58	21	26	10	42	1.85
250999--251040	18	2.3	18	79	0	57	35	11	11	40	1.79
252235--252317	36	2.3	36	100	0	166	45	18	0	36	1.49
252676--252733	30	1.9	30	82	0	71	39	22	10	27	1.86
267476--267539	32	2.0	31	82	8	76	29	17	15	37	1.91
269038--269191	41	3.8	41	93	0	263	20	19	22	37	1.95
269063--269176	20	5.6	20	73	4	111	15	21	23	39	1.92
269193--269287	22	4.5	21	71	16	79	15	18	29	35	1.93
269124--269293	68	2.6	64	90	7	256	17	20	27	35	1.94
269351--269382	6	5.5	6	96	3	57	34	46	18	0	1.49
269860--269895	5	7.4	5	96	3	65	0	41	22	36	1.54
269867--269901	15	2.3	15	90	0	52	0	37	25	37	1.57
269896--269946	6	8.5	6	100	0	102	0	15	50	33	1.44
270018--270119	41	2.5	42	90	4	156	35	23	17	23	1.95
270046--270141	21	4.6	21	82	2	131	34	27	17	20	1.95
277920--277963	22	2.0	22	82	8	54	54	2	6	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278930--279377	229	2.0	226	94	2	781	45	7	7	39	1.61
279609--279654	19	2.4	18	79	13	56	52	10	17	19	1.74
281883--281945	21	3.0	21	81	4	65	39	15	28	15	1.89
281979--282044	33	2.0	33	90	0	105	28	0	48	22	1.51
283830--283878	19	2.6	19	90	6	73	30	4	10	55	1.52
284003--285081	197	5.5	198	97	1	2087	35	15	16	32	1.90
285951--287851	183	10.4	183	97	0	3573	36	13	16	33	1.88
285951--287851	912	2.1	911	97	0	3608	36	13	16	33	1.88
290334--290384	22	2.3	23	93	3	86	37	5	17	39	1.74
290815--290851	18	2.1	18	89	0	56	32	5	10	51	1.60
290807--290853	24	2.0	24	86	0	67	34	4	14	46	1.64
291107--291193	39	2.2	39	91	0	147	48	19	13	18	1.81
291609--291680	23	3.2	23	86	2	92	34	4	20	40	1.72
292034--292090	22	2.7	21	84	10	71	36	5	19	38	1.74
292034--292103	21	3.2	23	82	10	83	34	4	21	40	1.73
291399--292441	426	2.5	426	96	2	1892	40	7	12	38	1.72
292941--293078	20	7.2	20	85	11	200	40	14	19	25	1.89
292938--293078	53	2.5	60	86	7	170	40	14	19	25	1.90
293022--293049	13	2.2	13	100	0	56	42	7	21	28	1.79
293002--293069	33	2.1	33	94	0	118	42	13	19	25	1.87
293070--293195	20	6.3	20	87	1	155	30	23	19	25	1.98
293073--293195	59	2.1	60	85	1	167	30	23	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293785--293893	20	5.4	20	81	6	130	25	19	25	29	1.98
293785--293894	41	2.7	41	85	4	143	25	19	25	30	1.98
294936--294977	2	21.0	2	100	0	84	50	0	0	50	1.00
297099--297217	56	2.1	56	81	4	132	29	15	24	30	1.96
297189--297239	19	2.7	19	82	8	61	25	15	37	21	1.93
305665--305783	56	2.1	56	81	4	132	29	15	24	30	1.96
305755--305793	19	2.1	19	90	0	60	25	15	41	17	1.89
312573--314901	181	12.9	181	96	1	4235	29	18	12	39	1.88
312573--314901	360	6.5	362	96	1	4235	29	18	12	39	1.88
312573--314901	541	4.3	542	98	0	4485	29	18	12	39	1.88
316291--316375	44	1.9	44	90	0	134	34	17	17	30	1.94
317785--317833	22	2.3	21	82	6	62	36	16	0	46	1.47
322266--322388	54	2.3	54	91	0	192	32	26	18	22	1.97
324677--324714	19	2.0	19	89	0	58	34	21	21	23	1.97
325820--325895	36	2.1	36	85	7	100	47	1	3	47	1.29
334118--334152	18	1.9	18	94	0	61	57	25	2	14	1.51
336982--337065	30	2.8	29	76	3	78	36	8	17	36	1.80
337782--337890	40	2.7	40	95	0	191	22	12	27	36	1.91
342030--342083	20	2.7	21	86	13	78	16	1	3	77	1.00
342030--342085	21	2.8	20	84	15	71	17	1	3	76	1.01
346661--346696	18	2.0	18	88	0	54	19	8	30	41	1.81
347184--347259	36	2.1	37	92	2	127	26	23	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347237--347294	32	1.9	31	83	13	77	39	18	8	32	1.82
348121--348651	106	5.0	105	90	1	765	35	23	18	22	1.95
350221--350285	4	15.5	4	76	17	53	20	6	0	73	1.03
350221--350285	9	7.7	9	73	22	52	20	6	0	73	1.03
350238--350279	22	1.9	22	90	0	66	21	7	0	71	1.09
350221--350321	27	3.8	26	77	6	87	18	8	0	71	1.18
355588--355715	34	3.8	34	90	2	177	23	20	14	41	1.89
355563--355715	68	2.2	68	83	2	200	21	20	16	41	1.90
356193--356229	18	2.1	18	100	0	74	35	10	5	48	1.61
359942--360003	23	2.8	22	71	22	58	46	0	1	51	1.10
366666--366713	21	2.3	21	85	0	60	25	39	12	22	1.89
366717--366831	21	5.5	21	91	4	178	19	33	25	21	1.97
367350--367449	33	3.0	33	80	2	128	55	3	2	40	1.27
367351--367456	34	3.2	32	80	8	122	55	3	1	38	1.29
368869--369240	128	2.9	128	95	0	665	33	19	23	23	1.97
376005--376055	21	2.4	21	83	9	68	33	5	1	58	1.33
376931--377014	42	2.0	42	100	0	168	9	35	21	33	1.86
379536--379603	29	2.3	29	92	0	109	27	23	22	26	1.99
380763--380868	2	57.0	2	69	14	75	50	0	0	49	1.00
392942--392986	13	3.5	13	81	0	54	33	8	20	37	1.83
392950--392993	13	3.4	13	80	0	61	31	9	20	38	1.84
392942--392993	26	2.0	26	92	0	86	32	9	19	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400270--400302	14	2.4	14	100	0	66	57	12	0	30	1.35
400453--400526	38	2.0	37	84	5	96	44	1	4	50	1.29
407240--407363	31	4.0	31	79	8	135	31	20	18	29	1.97
407244--407363	63	1.9	62	86	8	172	31	20	18	29	1.96
408409--408453	21	2.1	21	87	0	63	15	24	28	31	1.96
411775--411858	30	2.8	30	81	0	96	30	28	21	19	1.97
411834--411957	31	4.0	31	77	8	126	31	20	18	29	1.96
413003--413047	21	2.1	21	87	0	63	15	24	28	31	1.96
415376--415462	46	1.9	46	83	4	115	48	3	14	33	1.61
415698--415772	21	3.6	21	96	0	132	21	20	30	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13