genome.fa.s7979.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2651991--2652041	21	2.3	22	83	12	61	3	15	0	80	0.86
2654004--2654049	21	2.2	21	88	0	65	58	6	15	19	1.58
2653998--2654036	14	2.7	14	92	4	60	61	7	12	17	1.54
2654114--2654200	43	2.0	44	88	6	133	34	22	10	32	1.88
2655141--2655201	30	2.0	30	100	0	122	26	9	26	37	1.87
2656127--2656180	22	2.5	23	85	11	78	44	0	1	53	1.11
2656391--2656417	4	6.8	4	100	0	54	77	0	0	22	0.76
2656666--2656703	19	2.2	18	86	13	53	68	5	10	15	1.36
2664344--2664407	9	7.1	9	100	0	128	10	43	0	45	1.39
2665917--2665942	12	2.2	12	100	0	52	0	30	15	53	1.42
2668406--2668463	24	2.3	24	82	8	64	56	1	8	32	1.40
2670415--2670462	21	2.4	21	83	16	59	18	12	0	68	1.20
2672222--2672294	29	2.5	29	79	2	74	19	21	9	49	1.76
2672370--2672657	41	6.8	41	71	13	181	26	18	6	48	1.73
2672338--2672657	44	7.5	42	72	14	217	26	18	6	48	1.72
2672338--2672530	85	2.2	87	79	9	216	26	16	6	51	1.67
2672366--2672657	88	3.4	85	77	11	251	26	18	6	48	1.73
2672868--2672960	21	4.5	21	75	4	91	39	17	25	17	1.91
2672868--2672960	41	2.3	41	98	0	177	39	17	25	17	1.91
2672949--2673043	20	4.7	20	80	2	91	34	24	17	23	1.96
2672946--2673023	41	1.9	41	86	0	111	39	21	16	21	1.92
2673518--2673561	20	2.2	20	87	0	61	11	18	20	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2674881--2674925	18	2.5	18	88	0	72	26	44	15	13	1.83
2675431--2675488	14	3.9	14	79	16	71	48	24	17	10	1.78
2675415--2675505	32	2.8	33	94	3	166	47	21	18	12	1.81
2675522--2675579	14	3.9	14	79	16	71	10	17	24	48	1.78
2675517--2675595	32	2.4	33	91	2	133	11	18	22	46	1.81
2675568--2675634	19	3.5	19	83	4	89	14	23	23	37	1.93
2675580--2675634	20	2.8	19	89	5	83	16	25	23	34	1.95
2677618--2677728	33	3.4	33	84	0	150	45	20	20	13	1.85
2677637--2677697	14	4.0	14	73	19	50	49	19	18	13	1.79
2677648--2677728	14	4.8	18	70	25	70	49	18	18	13	1.79
2677747--2677804	20	2.9	20	92	0	89	18	22	20	37	1.94
2678864--2678917	24	2.2	24	90	0	81	24	16	20	38	1.92
2679092--2679116	12	2.1	12	100	0	50	72	0	28	0	0.86
2681406--2681536	19	7.7	19	66	23	94	42	19	22	14	1.88
2681406--2681532	33	3.8	33	88	4	202	42	19	22	14	1.88
2681407--2681539	66	2.0	66	97	0	248	41	19	22	16	1.90
2681532--2681574	20	2.2	20	83	4	52	16	18	25	39	1.91
2681715--2681751	14	2.6	14	91	0	65	45	24	0	29	1.53
2683109--2683175	21	3.2	21	68	4	55	19	20	35	23	1.95
2683109--2683231	42	2.9	41	80	7	113	22	17	36	22	1.95
2685258--2685356	33	3.0	33	89	1	144	39	26	23	11	1.88
2685233--2685416	20	10.1	19	75	15	165	43	22	22	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2685328--2685416	37	2.4	37	92	3	142	46	22	20	11	1.82
2685412--2685492	19	4.5	19	74	16	73	11	17	24	46	1.80
2686047--2686147	20	4.9	21	71	12	59	18	19	18	42	1.89
2686010--2686103	20	4.7	20	78	2	89	24	18	23	34	1.96
2686031--2686165	41	3.3	41	81	4	130	19	20	20	39	1.93
2686092--2686182	20	4.4	20	75	4	83	16	24	17	41	1.89
2686092--2686167	21	3.7	21	78	3	91	15	23	18	42	1.89
2686092--2686182	41	2.2	41	98	0	173	16	24	17	41	1.89
2686257--2686303	19	2.5	19	85	0	67	19	19	29	31	1.96
2687150--2687205	2	27.0	2	89	7	85	48	3	1	46	1.30
2698086--2698122	20	1.9	19	89	10	58	45	10	24	18	1.81
2698287--2698361	38	2.0	37	84	5	98	48	4	1	46	1.29
2700632--2701129	41	12.2	41	85	4	562	27	18	19	34	1.95
2701537--2701601	11	6.1	11	75	5	62	49	1	1	47	1.20
2701501--2701577	22	3.8	20	68	22	52	45	2	1	50	1.23
2701562--2701613	22	2.4	22	100	0	104	57	3	0	38	1.17
2702956--2702997	21	2.0	21	100	0	84	19	33	28	19	1.96
2704258--2704286	15	1.9	15	100	0	58	27	3	20	48	1.66
2704388--2704600	43	5.0	43	88	1	329	40	19	19	21	1.92
2704361--2704648	128	2.2	128	79	4	319	36	19	18	25	1.95
2715832--2716095	129	2.0	129	94	0	456	30	16	22	30	1.96
2725832--2725878	23	2.1	21	88	7	67	46	12	2	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2730976--2731027	22	2.3	22	83	6	59	23	3	13	59	1.50
2733233--2733318	42	2.1	40	84	4	109	41	3	18	36	1.68
2733865--2734008	71	2.0	72	86	5	200	56	12	6	24	1.61
2745760--2745916	65	2.5	61	76	10	145	43	5	8	42	1.58
2753064--2753133	24	3.0	23	85	4	104	31	25	24	18	1.98
2755152--2755184	16	2.0	17	88	5	50	33	6	24	36	1.80
2755412--2755496	23	3.7	23	71	14	75	21	27	24	27	1.99
2756209--2756251	21	2.0	21	100	0	86	25	23	27	23	2.00
2756890--2756941	19	2.7	19	96	0	95	23	30	15	30	1.95
2762723--2762780	28	2.0	29	83	3	73	44	1	15	37	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!