genome.fa.s7979.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603735--603767	17	1.9	17	93	0	57	45	12	6	36	1.66
603848--603897	3	16.3	3	95	4	91	34	0	0	66	0.92
603888--603929	2	21.5	2	95	4	77	47	0	0	52	1.00
606949--606994	15	3.1	15	71	22	51	36	8	13	41	1.75
608397--608461	24	2.7	24	73	4	69	32	23	18	26	1.97
608609--608678	15	4.7	15	78	1	70	37	17	5	40	1.73
611957--612082	31	4.1	31	95	1	227	39	3	23	33	1.73
612301--612395	49	2.0	49	83	10	124	26	22	18	32	1.97
612470--612503	9	3.8	9	92	0	50	32	14	11	41	1.82
613539--613676	21	6.7	21	70	3	66	35	25	18	21	1.95
613644--613872	20	11.4	20	82	5	239	37	25	17	19	1.94
614565--614611	24	2.0	24	87	8	69	25	14	21	38	1.92
614786--614810	12	2.1	12	100	0	50	72	0	28	0	0.86
617094--617344	33	7.2	34	70	19	178	45	17	22	13	1.84
617108--617344	53	4.5	53	95	2	424	45	17	22	14	1.84
617108--617350	19	13.7	19	76	18	265	45	17	22	14	1.85
617094--617273	86	2.1	84	85	12	233	46	17	22	13	1.84
617108--617344	105	2.2	106	95	2	424	45	17	22	14	1.84
617321--617436	53	2.2	52	84	3	151	18	22	18	39	1.92
617359--617479	19	6.8	19	75	18	136	13	22	16	47	1.81
617379--617471	33	2.8	33	96	0	177	12	21	18	47	1.82
617570--617606	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619529--619701	19	9.6	19	78	12	168	46	23	19	10	1.81
619623--619679	14	3.7	14	77	20	60	45	22	21	10	1.82
619604--619696	33	2.8	33	95	0	168	47	21	20	10	1.80
619713--619739	14	1.9	14	100	0	54	7	14	29	48	1.71
619697--619790	33	2.9	32	90	4	143	7	15	26	50	1.71
619697--619806	19	6.3	18	74	20	92	9	15	27	48	1.75
619851--620597	93	8.1	93	98	1	1455	46	19	12	21	1.83
619851--620597	278	2.7	279	98	0	1455	46	19	12	21	1.83
622294--622390	20	5.2	20	75	18	109	47	17	23	11	1.80
622292--622356	21	3.1	21	86	4	105	49	15	24	10	1.76
622341--622397	14	3.7	14	75	20	60	43	22	24	8	1.81
622292--622414	33	3.5	33	90	8	165	47	18	23	10	1.80
622431--622487	14	3.7	14	75	20	60	8	24	22	43	1.81
622415--622495	33	2.5	33	95	0	144	8	22	22	46	1.78
622586--622656	33	2.2	33	94	0	124	47	16	23	11	1.79
623037--623249	20	10.6	20	84	5	216	17	18	26	37	1.93
630552--630594	20	2.2	20	86	0	59	34	20	13	30	1.92
635497--635539	20	2.2	20	86	0	59	34	20	13	30	1.92
650353--650392	19	2.1	19	95	0	71	22	15	27	35	1.94
650350--650400	19	2.5	20	84	12	68	19	17	27	35	1.94
651112--651175	19	3.2	19	70	12	65	40	21	18	18	1.91
651127--651198	22	3.4	22	69	11	78	38	25	18	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651105--651198	41	2.3	41	96	0	170	40	23	17	19	1.91
651193--651266	20	3.5	20	79	16	85	39	24	25	10	1.88
651193--651259	25	3.0	23	87	10	86	38	23	25	11	1.89
651689--651805	24	4.9	24	83	6	121	41	18	11	28	1.86
651682--651834	72	2.1	72	80	9	161	42	17	11	28	1.84
655490--655527	20	1.9	20	88	0	58	21	26	10	42	1.85
661795--661930	2	72.0	2	72	21	98	50	2	2	44	1.29
661798--661933	5	28.6	5	72	16	85	51	2	2	43	1.29
661803--661933	7	18.1	7	71	16	81	51	3	2	43	1.30
661778--661939	20	7.7	21	70	16	95	53	3	1	41	1.29
662158--662243	3	28.7	3	92	0	145	34	2	0	62	1.08
662729--662772	19	2.2	20	88	4	63	77	6	15	0	0.97
662735--662769	18	1.9	18	100	0	70	80	2	17	0	0.84
662700--662769	20	3.6	20	80	3	81	72	5	21	0	1.05
663668--663710	22	2.0	21	86	4	59	37	2	2	58	1.24
675072--675156	1	85.0	1	73	0	71	87	0	12	0	0.56
675072--675157	6	13.8	6	87	10	102	86	0	13	0	0.58
675073--675157	20	4.0	21	82	11	111	85	0	14	0	0.59
675075--675156	26	3.2	25	85	11	112	86	0	13	0	0.57
675069--675156	37	2.4	37	92	3	142	86	0	13	0	0.57
676090--676724	84	7.6	84	94	0	1085	28	14	21	34	1.93
677466--678235	113	6.8	112	93	1	1132	36	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678557--678633	3	25.7	3	91	0	127	35	2	0	62	1.09
679131--679167	19	1.9	19	100	0	74	81	2	16	0	0.81
680067--680109	22	2.0	21	86	4	59	37	2	2	58	1.24
685166--685190	10	2.5	10	100	0	50	60	0	0	40	0.97
685706--685738	17	1.9	17	88	11	50	63	0	3	33	1.10
686906--686992	35	2.5	34	78	12	88	55	10	6	27	1.59
689298--689351	25	2.3	23	83	6	72	68	1	1	27	1.10
689970--690012	20	2.2	20	91	0	68	44	9	9	37	1.69
701034--701067	17	2.0	17	88	0	50	52	0	2	44	1.16
704266--704361	50	1.9	50	82	0	120	30	11	10	47	1.73
704469--704496	2	14.0	2	100	0	56	50	0	0	50	1.00
710663--710742	42	1.9	42	92	0	133	32	6	7	53	1.54
712246--712325	7	11.7	7	90	5	101	35	0	57	7	1.27
712767--712839	32	2.3	32	100	0	146	30	42	20	6	1.78
713064--713134	33	2.2	33	89	5	108	43	32	9	14	1.78
713113--713194	32	2.6	32	77	11	87	37	24	7	30	1.83
715402--715476	30	2.5	30	82	0	87	44	20	8	28	1.79
718847--718874	2	14.0	2	100	0	56	50	0	0	50	1.00
720129--720194	21	3.1	21	76	6	62	24	19	19	36	1.95
722022--722068	16	3.1	15	79	8	51	23	2	6	68	1.24
725551--725587	17	2.1	19	90	10	60	29	0	2	67	1.04
730308--730485	51	3.5	51	87	1	257	26	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730480--730774	54	5.5	54	90	0	446	20	24	18	36	1.95
731158--731262	36	2.9	37	85	2	140	26	18	20	35	1.95
731157--731270	37	3.1	37	85	2	158	26	16	22	34	1.95
732487--732712	125	1.8	125	90	0	362	26	26	15	31	1.96
741529--741844	150	2.1	150	95	1	564	26	17	21	34	1.95
745152--745298	72	2.0	72	93	0	249	23	26	12	36	1.91
745945--746075	55	2.4	55	85	0	163	19	20	16	44	1.87
749891--750068	51	3.5	51	88	1	266	26	24	17	31	1.97
750063--750360	54	5.5	54	94	0	515	18	25	19	35	1.95
750743--750856	37	3.1	37	85	2	158	23	16	25	34	1.95
757366--757407	21	2.0	21	90	0	66	33	28	4	33	1.78
759212--759247	18	2.0	18	89	10	56	66	8	0	25	1.19
759486--759532	19	2.5	19	96	0	85	38	12	17	31	1.87
759687--759766	23	3.6	23	71	10	67	28	17	21	32	1.96
764075--764124	21	2.4	21	89	0	82	24	10	26	40	1.86
764262--764435	65	2.7	64	86	6	208	29	18	22	28	1.98
766407--766465	31	1.9	31	92	0	100	40	6	10	42	1.65
766689--766741	21	2.5	21	84	0	70	20	26	18	33	1.96
766731--766844	20	5.7	20	87	2	174	38	19	21	21	1.93
766731--766862	40	3.3	40	86	3	176	37	20	21	21	1.95
767046--767110	22	3.0	22	79	0	76	24	36	16	21	1.94
767441--767530	20	4.6	20	87	1	101	14	17	23	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
769410--769486	33	2.3	33	84	2	91	46	19	19	14	1.83
769476--769599	20	6.2	20	89	0	185	39	20	18	21	1.92
769669--769762	33	2.8	34	78	3	118	13	19	22	44	1.85
770243--770341	21	4.8	20	69	10	65	22	34	20	23	1.97
770240--770350	42	2.7	43	78	5	129	20	36	18	24	1.95
771732--771767	14	2.6	14	90	0	54	30	0	22	47	1.52
771873--771968	33	2.8	33	84	3	120	42	19	22	14	1.88
771983--772067	33	2.5	33	92	1	134	14	23	18	43	1.87
772050--772118	20	3.5	20	88	4	104	17	21	24	36	1.95
774547--774600	24	2.2	24	93	0	90	40	20	18	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13