genome.fa.s7979.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2277535--2277593	14	3.9	14	76	20	64	6	16	28	47	1.72
2277519--2277642	33	3.7	33	89	1	176	8	16	27	46	1.77
2277519--2277577	19	3.4	19	77	22	83	6	15	30	47	1.71
2277568--2277624	14	3.7	14	75	20	51	8	21	24	45	1.80
2279538--2279602	21	3.1	21	80	4	87	47	15	24	12	1.79
2279538--2279660	33	3.5	33	85	10	140	47	17	24	11	1.80
2279685--2279761	21	3.7	21	82	6	111	12	23	16	46	1.82
2279840--2279910	33	2.2	33	94	0	124	47	16	23	11	1.79
2280291--2280464	20	8.6	20	86	5	226	19	18	27	34	1.95
2280432--2280483	20	2.6	20	84	6	61	11	17	26	44	1.83
2280290--2280483	60	3.2	60	77	8	207	19	18	26	36	1.94
2281212--2281281	31	2.3	31	84	0	86	32	10	5	51	1.59
2281222--2281287	31	2.1	31	88	0	96	37	7	6	48	1.56
2283447--2283562	21	5.5	21	85	2	144	24	0	30	44	1.59
2283446--2283472	14	1.9	14	100	0	54	25	0	29	44	1.54
2283524--2283590	28	2.4	28	85	11	93	20	0	34	44	1.52
2285873--2285905	15	2.1	16	88	5	50	48	21	0	30	1.50
2291098--2291300	105	1.9	105	82	2	255	38	21	15	23	1.92
2296816--2296859	20	2.2	20	92	4	72	20	11	25	43	1.85
2298227--2298291	20	3.2	20	68	10	60	20	18	26	35	1.95
2298248--2298395	68	2.2	68	98	0	287	20	25	21	31	1.98
2298387--2298458	22	3.4	22	71	11	78	18	18	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2298408--2298473	19	3.3	19	68	12	60	18	18	21	42	1.89
2298387--2298473	41	2.1	41	97	0	165	18	18	22	40	1.91
2298410--2298473	22	3.0	22	68	14	55	18	17	21	42	1.89
2298549--2298576	6	4.7	6	100	0	56	35	50	14	0	1.43
2299066--2299119	10	5.4	10	86	0	54	0	27	38	33	1.57
2299081--2299148	5	12.6	5	88	1	55	0	20	48	30	1.50
2299066--2299150	10	8.0	10	88	3	53	0	23	43	32	1.54
2299094--2299152	6	10.5	6	94	5	90	0	16	50	32	1.46
2299269--2299407	20	6.8	21	72	4	122	37	24	19	18	1.94
2299244--2299410	82	2.0	83	91	5	277	37	23	20	18	1.94
2299269--2299414	21	7.1	21	72	4	136	37	24	19	18	1.94
2299269--2299410	41	3.5	41	96	0	266	37	23	19	19	1.94
2307162--2307191	13	2.2	14	94	5	53	36	13	0	50	1.42
2307951--2307999	24	2.1	23	85	11	64	51	2	4	42	1.32
2308569--2308604	18	2.0	18	100	0	72	44	27	0	27	1.55
2322155--2322220	24	2.8	24	88	0	105	10	10	19	59	1.60
2322173--2322199	14	1.9	14	100	0	54	7	11	22	59	1.56
2322489--2322519	14	2.2	14	94	0	53	9	12	19	58	1.62
2322853--2322901	19	2.5	19	77	9	55	51	6	4	38	1.46
2324499--2324575	24	3.2	24	69	20	61	25	23	20	29	1.99
2325148--2325193	12	4.0	12	75	11	51	19	21	19	39	1.93
2325151--2325196	22	2.1	22	91	0	74	21	19	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2325154--2325203	22	2.3	22	85	0	73	22	18	16	44	1.87
2326774--2326808	2	17.0	2	88	5	52	48	0	5	45	1.26
2327147--2327211	23	2.8	23	80	0	76	33	23	23	20	1.97
2329225--2329262	5	7.8	5	91	2	60	65	0	34	0	0.93
2338798--2338872	21	3.7	20	81	3	78	28	25	17	29	1.97
2338860--2339088	20	11.4	20	82	5	239	36	25	17	20	1.94
2339781--2339827	24	2.0	24	87	8	69	25	14	21	38	1.92
2340002--2340026	12	2.1	12	100	0	50	72	0	28	0	0.86
2342308--2342558	33	7.2	33	72	15	193	46	17	22	13	1.83
2342322--2342558	53	4.5	53	96	1	431	46	17	21	13	1.83
2342322--2342564	19	13.7	19	76	18	265	46	17	22	13	1.84
2342308--2342564	86	2.9	90	80	12	270	45	17	22	13	1.84
2342322--2342558	105	2.2	106	96	0	431	46	17	21	13	1.83
2342535--2342648	53	2.2	52	85	3	156	18	23	18	39	1.92
2342573--2342660	19	4.8	19	81	14	114	13	22	14	48	1.79
2342751--2342787	14	2.6	14	91	0	65	45	21	0	32	1.52
2344713--2344838	19	6.6	19	85	0	162	46	24	19	10	1.81
2344729--2344833	38	2.8	38	97	0	192	48	23	19	8	1.76
2344850--2344908	14	3.9	14	76	20	64	6	16	28	47	1.72
2344834--2344957	33	3.7	33	91	1	185	8	17	27	45	1.78
2344834--2344925	19	5.4	18	72	24	83	7	17	28	46	1.75
2344883--2344939	14	3.7	14	72	20	51	8	22	24	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2345055--2345555	93	5.4	93	98	0	968	45	18	13	21	1.85
2345055--2345555	185	2.7	186	98	0	968	45	18	13	21	1.85
2345055--2345555	278	1.8	278	98	0	975	45	18	13	21	1.85
2347251--2347347	20	5.2	20	72	18	100	46	17	24	11	1.81
2347249--2347313	21	3.1	21	82	4	96	47	15	26	10	1.78
2347298--2347354	14	3.7	14	75	20	60	43	22	24	8	1.81
2347249--2347371	33	3.5	33	90	8	165	46	18	24	10	1.81
2347388--2347444	14	3.7	14	75	20	60	8	24	22	43	1.81
2347372--2347451	33	2.4	33	95	0	142	8	21	22	47	1.78
2347432--2347505	21	3.5	21	80	7	96	14	20	17	47	1.83
2347585--2347655	33	2.2	33	94	0	124	47	16	23	11	1.79
2348035--2348166	20	6.6	20	85	3	167	18	19	27	34	1.96
2348160--2348207	20	2.3	20	85	3	69	35	14	22	27	1.93
2348532--2348577	23	2.0	23	86	0	65	23	21	15	39	1.92
2353443--2353585	76	1.9	76	85	0	196	26	14	13	45	1.82
2354204--2354248	9	4.7	9	81	13	54	80	0	2	17	0.82
2354205--2354248	15	3.1	14	81	12	54	81	0	2	15	0.78
2354204--2354243	5	8.4	5	79	20	50	80	0	0	20	0.72
2354204--2354242	20	2.0	19	90	5	60	79	0	0	20	0.73
2355106--2355212	38	2.8	38	81	0	115	28	16	14	41	1.87
2357410--2357470	23	2.7	23	92	0	104	26	27	27	18	1.98
2357695--2357753	31	1.9	31	86	10	86	33	25	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2357797--2357858	25	2.4	25	81	7	72	41	8	12	37	1.73
2360768--2360818	22	2.3	22	93	0	84	31	25	25	17	1.97
2360776--2360820	22	2.0	22	100	0	90	26	26	26	20	1.99
2361040--2361099	30	2.0	31	90	3	95	33	23	6	36	1.81
2361114--2361185	29	2.5	29	93	0	117	38	12	9	38	1.76
2361488--2361642	69	2.2	70	85	4	199	18	27	27	26	1.98
2361622--2361664	21	2.0	21	86	0	59	16	25	27	30	1.97
2367620--2367670	22	2.3	22	93	0	84	31	25	25	17	1.97
2367628--2367672	22	2.0	22	100	0	90	26	26	26	20	1.99
2367892--2367951	30	2.0	31	90	3	95	33	23	6	36	1.81
2367966--2368037	29	2.5	29	93	0	117	38	12	9	38	1.76
2368340--2368490	66	2.2	68	88	2	216	18	26	27	27	1.98
2368470--2368512	21	2.0	21	86	0	59	16	25	27	30	1.97
2368341--2368512	67	2.6	67	83	8	197	18	26	26	27	1.98
2370633--2370692	31	2.0	30	87	9	86	36	25	1	36	1.66
2375697--2376065	190	2.0	188	86	4	528	46	8	5	39	1.58
2376448--2376509	32	2.0	32	84	6	83	58	1	0	40	1.08
2377204--2377334	51	2.7	50	77	13	121	35	3	3	57	1.32
2377303--2377349	21	2.2	21	88	0	67	29	0	4	65	1.11
2388319--2388360	21	2.0	21	85	0	57	23	0	42	33	1.55
2396631--2396677	22	2.1	22	100	0	94	29	6	17	46	1.72
2399540--2399583	22	2.0	23	86	4	63	52	9	4	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2399541--2399588	22	2.2	22	81	7	53	56	8	4	31	1.48
2400008--2400041	2	17.0	2	100	0	68	50	0	0	50	1.00
2408957--2409008	9	6.1	9	76	13	56	32	1	1	63	1.16
2408950--2409006	16	3.5	16	88	4	78	33	1	1	63	1.15
2410658--2410714	27	2.1	27	90	0	87	17	49	14	19	1.80
2411038--2411089	18	2.9	18	79	0	59	38	17	36	7	1.78
2411199--2411246	25	1.9	25	87	8	71	18	4	10	66	1.37
2411284--2411350	34	2.0	33	85	8	91	22	0	14	62	1.32
2417041--2417225	71	2.6	71	79	9	180	40	10	3	45	1.57
2417111--2417279	39	4.4	38	71	11	132	40	7	1	49	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13