genome.fa.s7979.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267941--1269090	105	11.0	105	92	1	1842	33	26	17	22	1.96
1269638--1269739	34	2.9	36	91	5	172	44	13	14	27	1.83
1270320--1270354	16	2.1	18	89	10	56	25	8	0	65	1.21
1270896--1270920	13	1.9	13	100	0	50	72	0	0	28	0.86
1271894--1271983	23	3.9	23	82	8	110	10	11	20	58	1.60
1275123--1275189	20	3.1	20	73	19	62	34	10	8	46	1.70
1279696--1279760	18	3.6	19	85	8	91	21	23	26	29	1.99
1283390--1283428	21	1.9	21	84	5	53	30	12	15	41	1.85
1286727--1286775	20	2.5	20	93	0	89	38	10	12	38	1.77
1290420--1290459	18	2.2	18	100	0	80	15	35	17	32	1.91
1290952--1290997	3	16.0	3	80	8	51	39	0	2	58	1.10
1298016--1298059	21	2.0	22	95	4	81	22	9	18	50	1.75
1301905--1302163	110	2.4	110	78	6	271	22	17	23	35	1.95
1303293--1303332	17	2.4	17	87	8	55	0	17	2	80	0.83
1303293--1303332	9	4.7	9	82	17	50	0	17	2	80	0.83
1313483--1313528	4	11.8	4	80	13	51	78	2	0	19	0.86
1313480--1313528	15	3.4	14	78	15	55	77	2	0	20	0.87
1313480--1313528	10	5.0	10	77	18	50	77	2	0	20	0.87
1313444--1313528	17	4.8	18	68	15	61	71	3	5	18	1.21
1313723--1313772	26	1.9	26	84	8	66	76	0	8	16	1.02
1315190--1315269	32	2.5	31	83	2	97	47	5	10	37	1.59
1325226--1325276	21	2.4	21	96	0	93	25	27	27	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1325245--1325321	40	1.9	40	86	5	111	24	22	23	29	1.99
1331929--1332030	31	3.4	31	73	10	120	32	22	4	40	1.75
1331930--1332112	60	3.0	60	85	4	244	32	22	4	40	1.75
1337471--1337530	29	2.1	29	87	3	86	46	10	11	31	1.73
1341492--1341542	20	2.5	20	100	0	102	11	19	37	31	1.88
1362876--1362960	40	2.1	40	78	10	93	41	2	21	35	1.66
1364599--1364639	2	20.5	2	100	0	82	51	0	0	48	1.00
1371184--1371227	5	8.8	5	87	7	63	43	22	0	34	1.54
1376430--1376464	16	2.2	16	100	0	70	40	11	22	25	1.88
1377290--1377358	36	1.9	36	93	0	120	11	44	15	27	1.81
1377303--1377597	149	2.0	149	98	0	572	20	25	17	36	1.94
1378526--1378751	113	2.0	113	99	0	443	23	27	11	38	1.88
1379790--1379872	39	2.1	38	82	8	96	55	2	9	32	1.45
1379999--1380114	57	2.0	57	100	0	232	41	24	8	25	1.83
1381361--1381597	116	2.1	115	89	4	361	53	2	13	30	1.55
1386038--1386198	64	2.5	63	80	5	180	31	19	24	24	1.98
1387081--1389531	4	618.2	4	97	2	4689	25	0	25	49	1.51
1389775--1389877	30	3.4	30	93	0	170	24	21	21	33	1.97
1392876--1392919	14	3.4	13	81	9	54	38	0	2	59	1.10
1398795--1399167	191	1.9	193	94	1	660	39	20	14	24	1.90
1402640--1402676	19	1.9	19	88	0	56	54	10	0	35	1.36
1405178--1405401	119	1.9	119	92	1	378	38	15	3	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1406491--1406544	24	2.2	24	100	0	108	20	29	12	37	1.90
1408955--1409002	23	2.0	24	88	4	71	37	16	16	29	1.91
1411288--1411329	21	2.0	21	95	0	75	30	14	7	47	1.71
1411324--1411422	33	3.0	32	91	4	153	33	7	14	45	1.71
1412546--1412579	17	2.0	17	94	0	59	44	11	2	41	1.56
1412536--1412579	17	2.8	15	80	12	52	38	9	2	50	1.47
1414369--1414453	30	2.9	29	77	3	82	23	8	7	61	1.49
1417617--1417667	22	2.3	22	86	6	68	25	9	19	45	1.81
1417666--1417733	23	3.0	23	80	0	64	17	20	25	36	1.94
1423612--1423679	34	1.9	36	82	5	86	30	22	11	35	1.90
1423761--1423905	67	2.2	68	86	2	195	31	15	11	40	1.84
1423854--1423965	36	3.1	36	86	0	143	23	21	13	41	1.88
1423978--1424110	69	1.9	69	83	6	171	30	19	12	36	1.89
1424050--1424146	36	2.7	35	87	7	133	28	17	11	42	1.84
1424086--1424177	33	2.6	36	79	5	100	31	16	13	39	1.86
1424288--1424466	88	2.0	88	92	0	295	22	32	17	27	1.96
1424316--1424509	40	4.6	41	73	17	137	23	32	18	26	1.97
1425910--1425970	30	2.0	30	83	0	77	19	6	8	65	1.41
1426522--1426585	22	3.4	18	81	16	60	45	9	1	43	1.45
1430842--1430898	21	2.7	21	97	0	105	28	22	24	24	2.00
1431153--1431222	22	3.2	23	74	8	65	20	14	20	45	1.85
1438021--1438085	25	2.5	26	95	5	123	23	4	7	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1444015--1444212	95	2.1	96	85	2	265	32	15	22	29	1.95
1444033--1444238	95	2.2	96	82	6	231	32	16	23	27	1.96
1450609--1450702	6	15.2	6	75	17	52	73	0	19	7	1.06
1450588--1450678	12	7.7	11	68	21	51	73	0	19	6	1.05
1450618--1450679	24	2.7	24	82	5	74	75	0	16	8	1.02
1450657--1450706	17	2.9	17	76	8	57	72	0	22	6	1.07
1453396--1453661	36	7.4	36	86	6	299	36	23	19	20	1.95
1453396--1453643	108	2.3	108	86	2	363	37	23	20	18	1.94
1454043--1454594	51	10.5	50	83	8	534	32	18	25	24	1.97
1454043--1454548	156	3.2	152	84	6	570	32	18	25	23	1.97
1454032--1454579	207	2.6	209	86	6	759	32	18	24	24	1.97
1454553--1454777	55	4.1	55	87	1	328	28	13	29	28	1.94
1454519--1454777	110	2.4	109	83	7	305	28	14	28	28	1.95
1458349--1458577	46	5.0	46	89	0	341	44	12	22	20	1.85
1458473--1458558	26	3.5	26	65	20	69	43	16	20	19	1.88
1458499--1458577	20	3.7	20	69	18	59	40	12	26	20	1.88
1459169--1459224	24	2.3	24	81	0	67	39	25	19	16	1.91
1459206--1459307	23	4.4	23	76	7	109	34	25	21	18	1.96
1459217--1459315	46	2.2	46	87	3	137	35	23	22	19	1.96
1459439--1459499	17	3.5	17	76	12	61	45	16	6	31	1.73
1474022--1474052	4	7.8	4	100	0	62	22	0	0	77	0.77
1480865--1480936	20	3.6	20	76	10	67	31	23	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1482255--1482308	3	18.0	3	96	0	99	64	1	0	33	1.04
1482493--1482526	17	2.0	17	100	0	68	35	23	0	41	1.55
1495792--1495857	28	2.4	28	100	0	132	59	7	3	30	1.41
1495805--1495858	16	3.6	16	70	27	55	61	7	1	29	1.34
1497296--1497365	30	2.3	30	82	4	88	41	10	22	25	1.85
1504935--1505096	83	2.0	83	93	2	281	45	9	4	39	1.59
1511867--1511891	4	6.2	4	100	0	50	76	0	24	0	0.80
1518014--1518046	17	1.9	17	93	0	57	51	3	9	36	1.49
1524318--1524469	76	2.0	76	97	0	286	37	21	7	32	1.83
1524745--1524790	20	2.2	21	84	7	58	30	2	8	58	1.40
1524744--1524793	21	2.3	23	76	13	61	32	2	8	58	1.39
1526311--1526362	16	3.2	17	72	22	58	44	0	19	36	1.51
1527168--1527329	78	2.1	78	98	0	315	40	11	4	43	1.62
1528331--1528365	16	2.2	16	90	10	54	34	0	2	62	1.10
1528956--1529016	28	2.2	29	80	13	67	49	4	4	40	1.46
1529532--1529572	11	3.7	11	83	0	55	73	0	2	24	0.96
1534278--1534930	124	5.3	124	83	6	829	30	18	13	37	1.90
1541163--1541224	31	2.0	31	90	6	99	33	1	8	56	1.38
1541330--1541562	106	2.2	105	81	11	273	43	23	9	24	1.82
1548228--1548290	33	1.9	33	86	0	90	14	30	22	33	1.93
1548224--1548298	33	2.3	33	76	0	87	12	26	28	33	1.92
1550746--1550812	27	2.5	27	72	0	62	53	1	2	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551648--1551692	15	3.0	15	80	0	63	80	0	0	20	0.72
1552317--1552354	17	2.2	17	86	13	51	39	21	15	23	1.92
1554723--1554768	17	2.9	16	87	6	58	32	0	2	65	1.05
1555446--1555474	13	2.1	14	93	6	51	65	0	6	27	1.18
1555915--1556041	60	2.1	61	79	7	152	30	15	18	35	1.92
1556696--1556728	2	17.0	2	87	6	50	48	0	3	48	1.17
1556711--1557027	36	8.7	36	75	12	265	44	2	5	47	1.41
1557047--1557114	30	2.3	31	82	10	79	52	5	2	38	1.41
1557178--1557243	29	2.4	28	83	16	77	19	4	3	72	1.15
1563554--1564883	165	8.0	165	87	3	1628	29	25	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13