genome.fa.s7979.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007979.1 Hibiscus syriacus cultivar Beakdansim tig00110418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2767453

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  9  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816720--1816764	13	3.3	13	78	9	54	62	2	2	33	1.20
1816720--1816771	27	2.0	28	85	11	74	61	5	1	30	1.30
1816778--1816872	32	3.1	30	75	14	88	60	1	7	31	1.31
1817079--1817145	2	33.5	2	100	0	134	49	0	0	50	1.00
1818141--1818248	3	36.7	3	85	7	150	67	0	1	30	1.01
1822193--1822224	2	16.0	2	100	0	64	50	0	0	50	1.00
1827316--1827396	42	2.0	42	87	2	119	33	24	17	24	1.96
1829644--1829697	14	3.6	14	77	18	63	59	9	14	16	1.60
1829644--1829711	14	4.7	14	75	16	59	55	8	16	19	1.66
1829643--1829715	32	2.3	32	95	0	128	57	9	15	17	1.64
1832035--1832062	2	14.0	2	100	0	56	50	0	0	50	1.00
1832062--1832088	2	13.5	2	100	0	54	0	0	48	51	1.00
1834247--1834314	32	2.1	32	94	0	118	57	7	16	19	1.62
1834248--1834301	14	3.6	14	75	18	54	61	7	14	16	1.55
1839810--1839858	18	2.5	19	80	12	55	16	2	8	73	1.16
1841684--1841740	22	2.6	22	97	0	105	24	10	10	54	1.66
1847244--1847284	18	2.3	18	91	0	64	21	48	7	21	1.74
1854067--1854137	35	2.1	34	84	10	92	22	4	7	66	1.34
1855671--1855717	19	2.5	20	83	16	66	38	0	0	61	0.96
1855737--1855826	4	22.8	4	70	10	60	28	3	2	65	1.20
1857379--1857445	23	2.9	23	76	12	66	32	28	14	23	1.95
1863990--1864030	20	2.0	20	85	0	55	17	31	21	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864761--1864857	30	3.2	31	68	11	92	23	18	15	42	1.88
1864763--1864996	60	3.9	60	84	2	281	24	17	17	40	1.91
1864763--1864997	120	2.0	120	84	3	312	24	17	17	40	1.91
1867344--1867392	18	2.7	18	80	0	62	30	30	14	24	1.94
1874937--1875009	20	3.7	20	92	1	112	47	23	15	13	1.80
1875018--1875069	21	2.5	21	90	3	79	32	26	21	19	1.97
1875627--1875723	20	4.8	20	82	12	110	50	20	17	11	1.76
1875627--1875734	19	5.5	19	83	9	110	50	22	16	11	1.77
1875738--1875807	33	2.1	33	91	0	113	11	21	20	47	1.81
1875746--1875868	33	3.5	33	79	11	111	13	23	20	42	1.88
1875799--1875876	20	3.9	21	86	5	90	15	24	19	41	1.90
1877571--1877893	94	3.4	94	95	0	549	21	13	18	46	1.83
1878240--1878347	21	5.2	20	68	16	67	20	36	20	23	1.95
1878269--1878351	42	2.0	42	83	4	105	21	37	20	20	1.95
1879705--1879740	14	2.6	14	90	0	54	30	0	22	47	1.52
1879875--1880027	19	8.8	19	68	21	102	45	16	22	16	1.85
1879898--1880022	33	3.8	33	86	1	187	44	17	23	15	1.86
1880039--1880119	20	4.4	18	73	19	71	17	18	16	48	1.82
1880785--1880990	20	10.4	20	81	6	215	19	17	25	37	1.94
1880785--1881051	40	6.7	40	84	5	294	19	17	25	37	1.93
1880999--1881051	20	2.7	20	91	5	81	13	18	24	43	1.86
1881019--1881112	42	2.3	42	76	9	95	21	21	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1887076--1887104	14	2.1	14	100	0	58	27	0	13	58	1.36
1887103--1887138	16	2.3	15	90	4	54	58	5	2	33	1.36
1891876--1891900	12	2.1	12	100	0	50	24	8	0	68	1.16
1894798--1894850	19	2.8	19	78	13	56	41	1	1	54	1.22
1898039--1898082	20	2.2	20	95	0	79	22	11	25	40	1.87
1907323--1907359	19	1.9	19	94	0	65	24	10	29	35	1.89
1907644--1907696	19	2.8	19	78	13	56	41	1	1	54	1.22
1908302--1908382	39	2.2	37	89	8	128	27	11	11	50	1.71
1909940--1909982	18	2.4	18	100	0	86	44	6	20	27	1.77
1910571--1910608	20	2.0	20	94	5	69	26	10	7	55	1.61
1910573--1910618	19	2.3	20	85	3	58	30	15	4	50	1.63
1912006--1912078	19	3.8	19	96	0	110	26	20	21	31	1.98
1917156--1917202	9	5.2	9	78	0	58	38	2	34	25	1.68
1917134--1917214	18	4.5	18	85	3	101	34	8	35	20	1.84
1925007--1925064	2	29.0	2	100	0	116	50	0	0	50	1.00
1928879--1928923	16	2.6	17	86	6	65	35	6	26	31	1.82
1930872--1930945	14	5.0	14	72	16	60	48	0	1	50	1.09
1932506--1932852	137	2.5	138	78	6	337	45	14	14	26	1.83
1933397--1933422	3	8.7	3	100	0	52	34	0	0	65	0.93
1945863--1945925	32	2.0	31	82	11	76	50	3	4	41	1.39
1949051--1949130	28	2.8	28	82	5	97	40	5	7	47	1.54
1949676--1949875	20	9.8	20	70	16	124	40	21	22	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949617--1949875	82	3.2	82	92	0	421	40	21	20	16	1.91
1949986--1950012	6	4.5	6	100	0	54	33	51	14	0	1.43
1950508--1950537	6	5.0	6	100	0	60	0	16	50	33	1.46
1950668--1950845	20	9.0	20	79	11	197	17	20	25	35	1.95
1950668--1950863	40	4.9	40	89	3	288	16	20	25	37	1.93
1950668--1950859	78	2.4	78	90	3	285	17	20	26	36	1.94
1950693--1950901	20	10.4	20	70	13	144	15	19	24	40	1.91
1952800--1952846	13	3.6	13	94	0	76	74	2	12	10	1.16
1954238--1954273	17	2.1	17	90	10	56	63	5	0	30	1.17
1962717--1962794	31	2.5	31	95	0	138	12	23	6	57	1.58
1970029--1970089	29	2.1	29	100	0	122	42	21	6	29	1.78
1970914--1971013	21	4.7	21	77	11	105	22	35	20	23	1.96
1971033--1971125	20	4.7	20	95	0	159	17	27	24	30	1.97
1971493--1971556	31	2.1	31	84	0	83	34	14	23	28	1.93
1974172--1974211	21	1.9	21	89	0	62	30	10	7	52	1.62
1974434--1974493	23	2.8	21	85	10	68	21	38	20	20	1.94
1975715--1975757	18	2.4	18	80	7	52	69	2	4	23	1.18
1976487--1976530	20	2.3	18	76	23	54	56	9	2	31	1.43
1976492--1976530	20	2.0	20	90	10	62	53	10	2	33	1.48
1978454--1978496	13	3.2	13	80	6	50	69	2	9	18	1.26
1978468--1978514	24	1.9	25	91	4	78	68	2	6	23	1.24
1984896--1984935	20	2.0	21	90	5	64	35	22	15	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1986965--1987015	27	1.9	26	84	4	66	31	23	17	27	1.97
1999606--1999655	24	2.1	24	85	7	66	60	14	2	24	1.45
2005869--2005928	31	1.9	32	86	10	88	28	15	6	50	1.69
2009012--2009053	21	2.0	21	100	0	84	42	9	23	23	1.83
2017424--2017450	3	9.0	3	100	0	54	66	0	0	33	0.92
2017685--2017719	7	5.0	7	100	0	70	14	14	14	57	1.66
2020076--2020130	26	2.1	27	89	3	85	27	12	27	32	1.93
2020571--2020707	21	6.6	21	84	9	165	32	24	20	22	1.98
2020654--2020726	20	3.6	20	75	17	87	36	17	21	23	1.94
2020591--2020726	41	3.3	41	86	7	161	33	22	20	23	1.97
2020578--2020760	62	2.9	62	81	11	164	31	22	21	24	1.98
2020716--2020810	21	4.6	21	76	17	90	23	22	24	30	1.99
2020675--2020810	62	2.2	62	84	7	170	27	20	23	28	1.99
2020736--2020813	41	1.9	41	86	5	113	21	21	21	34	1.97
2020716--2020826	21	5.2	21	74	8	82	24	22	21	31	1.98
2021592--2021676	21	4.3	20	73	18	72	32	20	22	24	1.97
2021603--2021677	16	4.1	17	74	24	71	36	20	20	24	1.95
2021621--2021699	41	2.0	41	92	5	135	36	17	20	25	1.94
2021688--2021838	21	7.2	21	82	10	184	23	21	25	29	1.99
2021643--2021824	83	2.2	81	86	5	242	27	20	23	28	1.99
2021702--2021818	62	1.9	62	91	3	191	23	22	23	31	1.98
2024246--2024288	18	2.2	20	88	8	63	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2025189--2025245	2	28.5	2	100	0	114	0	49	0	50	1.00
2027156--2027184	2	14.5	2	100	0	58	51	0	48	0	1.00
2035523--2035611	41	2.2	41	83	4	117	34	13	19	32	1.90
2036548--2036625	17	4.6	17	77	13	72	52	0	2	44	1.14
2036553--2036669	17	6.5	17	72	20	69	52	0	2	43	1.20
2036536--2036626	16	5.4	16	74	17	62	51	1	2	45	1.20
2036612--2036656	22	2.0	22	83	8	56	51	2	0	46	1.13
2040721--2040761	20	2.0	20	95	0	73	41	14	0	43	1.45
2040786--2040853	19	3.6	19	79	0	73	20	16	16	47	1.83
2041763--2041812	26	1.9	27	88	8	77	24	2	4	70	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13