genome.fa.s8053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6772376

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  1  of  32  ( 3749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8192--8234	22	2.0	21	90	4	68	37	13	0	48	1.43
8232--8294	27	2.3	27	97	0	117	33	9	15	41	1.80
9657--9732	34	2.3	33	84	6	93	63	1	2	32	1.17
10547--10619	32	2.3	33	90	4	114	13	36	4	45	1.63
17058--17102	23	2.0	23	82	8	56	24	4	6	64	1.37
19135--19183	17	2.8	18	78	3	55	34	8	28	28	1.86
21162--21197	8	4.6	8	93	3	56	72	0	8	19	1.10
23214--23251	19	2.0	20	89	5	60	21	13	21	44	1.85
28171--28230	31	1.9	31	89	0	93	41	3	10	45	1.54
28697--28758	18	3.2	20	78	19	62	61	0	1	37	1.06
28726--28786	21	2.6	24	70	21	58	57	1	1	39	1.18
28753--28909	63	2.5	63	89	5	239	55	3	0	41	1.16
28808--28880	23	3.0	24	83	15	87	53	1	0	45	1.09
28753--28912	12	12.8	12	71	19	89	55	3	0	41	1.15
33671--33727	28	2.0	30	82	6	73	49	0	0	50	1.00
35667--35972	48	6.4	48	88	0	423	27	46	13	12	1.79
35667--36011	144	2.4	143	86	1	440	27	46	12	13	1.79
35670--36011	48	7.1	47	85	2	389	27	46	12	13	1.80
36768--36811	21	2.2	20	91	4	70	36	0	0	63	0.95
36746--36811	18	3.5	18	85	6	78	33	1	0	65	1.02
36843--36932	37	2.5	37	90	3	139	40	5	0	54	1.24
36843--36956	37	3.2	36	84	11	121	39	5	0	54	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37220--37338	21	5.8	21	82	5	109	38	26	15	20	1.91
37266--37318	20	2.7	20	93	0	88	24	32	18	24	1.97
38705--38752	18	2.7	18	90	0	78	27	43	12	16	1.84
39206--39251	20	2.3	20	88	0	65	34	23	23	17	1.96
39217--39260	20	2.2	20	96	4	81	34	18	27	20	1.96
39225--39305	19	4.5	19	74	16	73	41	20	22	14	1.89
39315--39395	33	2.4	33	83	2	99	11	20	23	44	1.84
39367--39414	20	2.4	20	92	0	78	14	25	27	33	1.94
39385--39440	20	2.8	20	88	0	76	23	16	28	32	1.96
39782--39842	21	2.9	21	78	7	79	22	40	13	22	1.89
39782--39870	42	2.1	42	87	0	124	22	41	14	21	1.89
41420--41484	33	1.9	33	81	3	76	44	23	20	12	1.84
41488--41534	20	2.3	20	92	0	76	17	21	23	38	1.93
41757--41830	20	3.7	20	88	0	112	29	18	27	24	1.98
41768--41875	20	5.3	20	77	8	85	27	16	25	29	1.97
41768--41889	41	3.0	41	73	3	104	28	16	26	28	1.97
41863--41916	21	2.6	20	77	8	63	35	18	24	22	1.96
41768--41936	20	8.3	20	73	13	60	29	17	25	27	1.97
44055--44117	30	2.1	30	90	0	99	65	11	6	17	1.45
47051--47113	11	5.9	11	75	14	69	41	1	0	57	1.08
47680--47753	38	1.9	38	88	0	112	52	21	9	16	1.71
47701--47744	22	2.0	22	86	0	61	52	18	9	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47723--47760	16	2.5	15	87	8	58	52	21	5	21	1.66
47853--47908	18	3.1	19	75	12	55	55	0	5	39	1.23
51240--51332	21	4.5	21	78	4	100	39	18	24	17	1.91
51240--51332	41	2.3	41	100	0	186	39	18	24	17	1.91
51363--51415	20	2.7	20	93	0	88	24	28	20	26	1.99
51932--51979	19	2.5	19	77	12	53	45	27	16	10	1.80
51975--52159	19	10.1	19	75	14	156	12	22	21	43	1.86
51975--52159	33	5.1	38	76	12	156	12	22	21	43	1.86
52102--52159	20	2.9	20	80	10	64	13	24	18	43	1.87
54148--54270	42	2.9	42	82	2	131	23	36	17	22	1.94
54201--54270	21	3.3	21	68	5	61	24	35	20	20	1.96
55483--55519	14	2.6	15	87	12	60	32	0	21	45	1.52
55646--55704	19	3.4	19	68	22	65	15	22	16	45	1.84
55627--55703	33	2.3	34	82	6	95	19	22	19	38	1.93
58183--58236	24	2.2	24	87	6	74	37	20	16	25	1.93
60650--60699	23	2.2	23	88	0	73	34	6	20	40	1.77
60394--61448	391	2.7	391	92	5	1673	43	8	9	38	1.68
61452--61524	23	3.2	23	86	0	92	35	5	17	41	1.73
61993--62047	23	2.3	23	81	3	74	32	16	12	38	1.86
62591--62630	20	2.0	20	95	0	71	55	22	15	7	1.65
62613--62643	14	2.2	14	94	0	53	58	25	12	3	1.50
62590--62629	10	4.0	10	90	0	62	57	22	12	7	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62929--62953	10	2.5	10	100	0	50	56	12	12	20	1.67
75031--75169	36	3.9	36	97	0	260	42	16	15	25	1.88
79643--79781	36	3.9	36	87	3	194	33	23	23	20	1.97
82304--82333	15	2.0	15	93	0	51	20	30	6	43	1.77
82517--82592	13	5.7	13	77	13	66	52	2	1	43	1.23
83301--83339	20	2.1	18	85	9	51	51	5	5	38	1.46
83432--83468	16	2.3	16	85	0	56	43	8	2	45	1.47
83598--83684	2	45.0	2	77	15	85	43	1	3	51	1.26
83862--83926	14	4.7	14	75	1	69	20	3	27	49	1.64
83905--84010	45	2.1	50	80	14	114	32	5	10	51	1.59
83980--84099	2	63.0	2	65	21	53	44	5	2	48	1.38
84069--84110	21	2.0	21	81	9	50	42	2	2	52	1.27
84188--84223	18	1.9	19	88	5	56	44	0	5	50	1.25
84194--84241	26	1.9	24	87	8	69	43	0	4	52	1.20
84195--84250	24	2.2	26	81	12	64	42	0	5	51	1.24
85821--85855	2	17.5	2	100	0	70	48	0	0	51	1.00
100107--100207	49	2.1	49	100	0	202	38	18	7	34	1.80
102676--102877	102	2.0	100	98	1	386	39	14	12	33	1.84
102878--103092	110	2.0	105	93	6	369	40	17	17	24	1.91
103474--103578	37	2.8	37	85	0	138	40	14	14	30	1.85
104144--104199	11	4.9	11	80	6	58	25	10	0	64	1.26
104811--104880	11	6.3	11	75	18	56	17	4	1	77	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104870--104928	20	3.1	19	72	18	50	18	11	1	67	1.30
104863--104914	23	2.4	22	81	15	56	17	11	1	69	1.27
106024--106063	20	2.0	21	95	5	73	5	22	0	72	1.04
107943--108030	44	2.0	44	95	0	158	17	17	31	34	1.93
109368--109398	10	3.1	10	95	0	53	83	0	16	0	0.64
109360--109420	15	4.2	14	80	16	63	81	3	13	1	0.88
109362--109420	20	2.9	19	78	12	55	81	3	13	1	0.90
109360--109421	27	2.3	28	83	5	74	80	3	14	1	0.91
110874--112352	106	14.0	106	89	2	2111	34	24	18	23	1.96
110874--112352	317	4.7	317	90	2	2192	34	24	18	23	1.96
113041--113144	37	2.8	37	82	4	122	42	13	15	28	1.85
113742--113794	26	2.0	26	89	7	81	28	0	1	69	0.99
113852--113876	2	12.5	2	100	0	50	48	0	0	52	1.00
117384--117409	2	13.0	2	100	0	52	50	0	0	50	1.00
118014--118047	16	2.1	16	94	0	59	8	5	29	55	1.54
121876--121908	2	16.5	2	100	0	66	51	0	0	48	1.00
123713--123744	17	1.9	17	93	6	57	34	6	6	53	1.51
126404--126441	15	2.5	15	95	0	67	5	18	68	7	1.34
128061--128124	18	3.6	18	81	10	78	40	0	1	57	1.08
128243--128281	2	19.5	2	100	0	78	48	0	0	51	1.00
128435--128477	14	2.9	15	83	16	54	16	11	0	72	1.13
130224--130347	31	4.0	31	94	4	216	38	22	19	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130224--130347	61	2.0	62	93	4	216	38	22	19	19	1.93
131005--131161	64	2.5	64	84	6	185	26	17	21	35	1.95
132708--132743	18	1.9	19	94	5	65	16	44	22	16	1.86
135364--135697	43	7.7	43	89	1	436	18	24	23	34	1.96
136648--136690	20	2.2	19	91	4	68	41	2	2	53	1.26
141579--141647	35	2.0	35	94	5	122	33	2	17	46	1.63
146532--146564	14	2.4	14	94	0	57	45	27	9	18	1.79
147714--147752	13	3.0	13	88	0	60	20	20	25	33	1.97
147685--147899	96	2.2	97	80	4	238	31	20	18	29	1.96
147819--147848	13	2.3	13	94	0	51	30	20	6	43	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32