genome.fa.s8053.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6772376

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  32  of  32  ( 3749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6727196--6727228	14	2.4	14	94	0	57	33	3	21	42	1.68
6727388--6727434	20	2.3	20	92	0	76	29	21	17	31	1.96
6727411--6727542	34	3.7	34	82	8	140	25	20	20	34	1.97
6727363--6727468	54	2.0	54	83	3	133	24	20	18	35	1.95
6727362--6727522	88	1.8	88	93	0	277	24	21	18	35	1.95
6727474--6727550	20	3.8	20	89	0	109	29	20	18	31	1.96
6727721--6727755	18	1.9	18	94	0	61	17	2	25	54	1.57
6729791--6729827	14	2.6	14	91	4	56	5	21	21	51	1.68
6730017--6730070	24	2.2	24	93	0	90	40	20	18	20	1.91
6730017--6730084	24	2.8	24	84	0	64	38	20	17	23	1.93
6730724--6730761	17	2.2	17	95	0	67	26	5	34	34	1.79
6730928--6731055	20	6.3	20	77	3	105	26	20	25	28	1.99
6734626--6734658	15	2.2	15	94	0	57	24	21	12	42	1.86
6733990--6735226	421	3.0	416	93	3	2109	25	13	18	42	1.87
6735304--6735371	31	2.2	31	92	2	111	20	16	5	57	1.60
6742245--6742288	18	2.5	16	80	20	52	15	0	18	65	1.27
6742245--6742289	17	2.5	19	83	16	60	15	0	17	66	1.25
6743422--6743477	29	1.9	29	85	0	76	19	0	21	58	1.39
6750617--6750773	42	3.8	41	75	5	118	33	18	21	27	1.96
6752668--6752721	28	1.9	28	85	7	74	29	9	14	46	1.76
6759260--6759345	21	4.1	21	84	3	102	37	19	41	1	1.59
6759268--6759360	21	4.4	21	83	4	98	38	19	40	1	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6759697--6759921	43	5.2	41	73	9	137	31	20	19	28	1.97
6761623--6761666	21	2.1	21	86	0	61	31	27	25	15	1.96
6763038--6763065	14	2.0	14	100	0	56	28	7	28	35	1.84
6763166--6763480	149	2.1	149	94	1	542	27	16	20	34	1.94
6763448--6763492	23	2.0	23	90	0	72	22	26	26	24	2.00
6764689--6764895	103	2.0	103	99	0	405	35	14	11	37	1.83
6770264--6770296	15	2.2	15	94	0	57	48	0	18	33	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32

The End!