genome.fa.s8053.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6772376

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  5  of  32  ( 3749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855569--855675	21	5.6	20	71	17	93	46	19	20	13	1.83
855630--855686	14	3.7	14	75	20	60	43	22	24	8	1.81
855623--855702	33	2.4	33	95	0	142	47	22	21	8	1.78
855720--855776	14	3.7	14	75	20	60	8	24	22	43	1.81
855703--855784	33	2.5	33	100	0	164	9	23	19	47	1.79
855761--855825	21	3.1	21	77	4	87	12	26	13	47	1.78
857508--857823	93	3.4	93	99	0	614	21	13	18	45	1.84
857939--857995	14	3.7	14	72	20	51	43	24	22	8	1.81
857937--858011	33	2.3	33	92	0	123	46	25	20	8	1.77
857953--858011	19	3.4	18	71	22	54	45	27	18	8	1.78
858007--858160	19	8.6	19	73	14	139	11	20	22	45	1.82
858029--858085	14	3.7	14	75	20	51	10	22	22	43	1.84
858012--858142	33	3.8	33	84	9	181	9	21	22	46	1.80
860083--860118	14	2.6	14	95	0	63	33	0	22	44	1.53
860225--860322	19	5.4	19	82	13	134	45	16	22	15	1.84
860225--860341	53	2.2	53	96	1	218	44	17	23	14	1.85
860331--860539	19	11.7	19	79	16	250	14	21	17	45	1.84
860337--860553	53	4.1	52	87	10	309	13	21	17	46	1.83
860331--860539	72	2.9	72	86	7	275	14	21	17	45	1.84
860407--860553	33	4.2	33	81	13	188	13	21	18	46	1.83
860337--860553	105	2.1	103	87	10	307	13	21	17	46	1.83
862836--862860	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863035--863081	24	2.0	24	87	8	69	38	21	14	25	1.92
863727--863955	20	11.4	20	85	4	248	19	17	26	35	1.94
864181--864221	16	2.6	15	84	7	55	34	0	2	63	1.08
864181--864229	15	3.1	17	80	16	52	36	0	2	61	1.08
865014--865053	7	5.7	7	96	0	62	70	0	25	5	1.08
866570--866663	45	2.2	43	83	9	111	52	4	1	42	1.28
868455--868543	43	2.1	43	80	4	99	23	23	15	37	1.93
868407--868751	41	8.4	41	74	10	152	28	19	18	34	1.95
868407--868680	122	2.2	122	78	3	293	28	19	18	33	1.95
868643--868860	42	5.3	41	78	5	154	29	20	16	33	1.95
871266--871487	111	2.0	111	92	0	372	20	19	17	42	1.89
873014--873072	21	2.8	21	84	0	73	18	5	20	55	1.61
873224--873492	43	6.3	43	84	2	299	27	22	21	28	1.99
875032--875123	42	2.2	42	94	0	157	17	16	19	46	1.84
875326--875389	22	2.9	23	81	6	62	46	0	0	53	1.00
875337--875396	30	1.9	32	86	6	88	46	0	0	53	1.00
875334--875416	32	2.5	33	73	15	91	50	1	0	48	1.08
875653--875722	34	2.2	34	83	14	89	48	2	0	48	1.16
875715--875767	28	1.9	28	85	11	74	56	0	0	43	0.99
875946--876001	29	1.9	29	85	0	76	30	8	7	53	1.59
883380--883459	40	2.0	39	87	2	115	35	22	16	26	1.95
901141--901183	19	2.3	19	95	0	77	30	30	6	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901307--901335	13	2.3	13	94	5	51	58	0	0	41	0.98
905417--905595	54	3.1	54	81	17	241	33	11	15	39	1.83
905439--905520	26	3.1	26	63	16	60	37	9	17	35	1.82
905484--905592	36	3.2	36	70	19	124	33	11	15	40	1.82
918131--918236	37	2.8	37	76	13	126	17	10	29	42	1.83
928274--928324	21	2.4	21	83	6	68	21	21	23	33	1.97
928832--928893	23	2.7	23	77	5	63	30	24	22	22	1.99
931167--933410	6	379.7	6	96	3	4200	32	16	16	33	1.92
934346--934400	21	2.6	21	77	8	58	34	21	20	23	1.97
934388--934616	20	11.4	20	82	5	239	36	25	17	20	1.94
935243--935288	23	2.0	23	86	4	65	26	13	21	39	1.90
937729--937949	19	12.7	19	73	21	207	45	16	21	16	1.85
937729--937888	33	4.7	31	74	18	115	46	16	21	15	1.84
937780--937943	33	4.8	33	73	16	145	45	16	21	15	1.85
937729--937949	52	4.2	52	92	1	347	45	16	21	16	1.85
937957--938053	19	5.4	19	83	14	134	14	22	17	45	1.85
937939--938053	52	2.2	52	95	4	207	13	24	18	43	1.86
938152--938189	13	2.8	14	88	4	60	44	21	0	34	1.52
938252--938288	12	3.2	12	84	7	58	62	18	0	18	1.34
940088--940241	19	8.8	19	76	15	136	46	23	20	9	1.80
940088--940174	37	2.3	38	86	2	113	47	25	19	8	1.77
940109--940236	33	3.8	32	85	8	150	46	24	19	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940107--940236	70	1.9	64	83	9	161	46	23	20	9	1.79
940197--940226	13	2.3	13	94	0	51	46	23	20	10	1.80
940253--940279	14	1.9	14	100	0	54	7	14	29	48	1.71
940237--940359	33	3.8	32	85	5	149	8	17	26	47	1.77
940407--941496	92	12.1	92	94	4	1906	45	19	13	21	1.84
940407--941496	271	4.0	274	95	3	1939	45	19	13	21	1.84
940406--941496	455	2.4	455	94	4	1944	45	19	13	21	1.84
943138--943200	21	3.1	21	77	8	78	49	14	25	11	1.76
943185--943240	14	3.7	14	72	22	51	42	23	25	8	1.82
943199--943262	19	3.7	19	70	23	68	43	21	23	10	1.84
943177--943257	32	2.5	33	97	2	155	46	19	23	9	1.80
943258--943410	33	4.7	33	94	3	256	8	23	22	45	1.79
943285--943454	14	9.6	19	72	20	106	11	22	19	45	1.83
943386--943454	21	3.4	20	76	7	68	15	20	17	46	1.84
943534--943603	33	2.1	33	91	0	113	48	17	22	11	1.79
943980--944172	20	9.6	20	84	5	237	19	19	26	34	1.95
944166--944215	21	2.4	20	80	9	55	26	18	20	36	1.95
945829--945988	65	2.5	64	82	5	189	32	21	18	26	1.97
948948--948978	14	2.2	14	100	0	62	32	19	16	32	1.94
951354--951448	21	4.4	21	76	9	77	26	26	22	25	2.00
951373--951453	23	3.7	23	77	8	96	25	25	24	23	2.00
951354--951448	44	2.2	42	87	7	129	26	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951354--951471	43	2.8	42	81	8	132	27	26	22	23	1.99
952988--953031	21	2.1	21	82	0	52	9	38	15	36	1.80
954035--954083	19	2.6	19	84	9	57	24	28	20	26	1.99
957901--957964	31	2.1	31	88	5	94	29	6	7	56	1.52
960949--961009	5	11.8	5	76	10	52	72	1	3	22	1.09
961292--961345	26	2.1	26	100	0	108	22	14	14	48	1.81
961794--961834	14	3.1	14	82	6	50	53	2	0	43	1.13
963334--963391	14	4.1	14	78	13	57	24	24	24	27	2.00
963574--963605	6	5.2	6	96	3	55	31	31	21	15	1.95
965939--966023	31	2.7	31	77	1	89	14	25	31	28	1.94
965939--966061	62	2.0	63	83	1	158	16	24	30	28	1.96
975089--975170	29	2.8	29	94	1	137	41	12	13	32	1.81
979055--979304	125	2.0	125	100	0	500	26	22	16	34	1.95
979865--979945	29	2.8	29	88	1	117	41	8	12	37	1.73
982283--982709	212	2.0	212	99	0	845	37	22	17	22	1.94
983325--983349	12	2.1	12	100	0	50	36	0	24	40	1.55
983529--983571	19	2.3	19	100	0	86	37	0	34	27	1.57
983954--983995	2	20.5	2	85	4	57	42	0	7	50	1.30
984518--984581	18	3.4	18	75	12	65	23	23	28	25	2.00
993851--993891	21	2.0	21	90	0	64	31	14	17	36	1.90
994453--994503	15	3.6	15	76	7	54	54	0	0	45	0.99
994817--994853	19	1.9	19	88	0	56	70	2	0	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996009--996087	37	2.1	37	84	9	99	32	18	18	29	1.96
999167--999191	13	1.9	13	100	0	50	16	28	24	32	1.96
1003063--1003106	21	2.1	21	82	0	52	6	38	18	36	1.77
1004107--1004262	64	2.4	66	81	10	178	35	19	17	27	1.94
1004593--1004661	30	2.3	30	92	0	111	39	4	23	33	1.74
1004885--1004934	23	2.2	23	85	0	64	24	20	20	36	1.95
1011066--1011207	63	2.2	64	82	9	175	33	19	19	26	1.96
1011551--1011619	30	2.3	30	89	0	102	39	5	23	31	1.78
1011830--1011897	23	3.0	23	88	0	91	22	27	25	25	1.99
1013385--1013544	65	2.5	65	85	5	209	32	22	17	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32