genome.fa.s8053.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6772376

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  31  of  32  ( 3749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6433214--6433250	20	1.9	19	89	10	58	45	10	24	18	1.81
6433996--6434021	13	2.0	13	100	0	52	46	7	0	46	1.31
6435976--6436072	38	2.8	34	75	18	85	46	2	3	48	1.29
6437271--6437303	2	16.5	2	93	0	57	0	45	0	54	0.99
6443990--6444141	76	2.0	76	97	0	286	30	9	18	42	1.81
6444207--6444283	22	3.5	22	83	3	102	35	23	9	32	1.86
6457519--6457544	4	6.5	4	100	0	52	23	0	0	76	0.78
6458510--6458585	27	2.6	31	81	10	88	26	18	22	32	1.97
6459160--6459188	15	1.9	15	100	0	58	17	6	27	48	1.72
6463180--6463218	20	2.0	19	95	5	69	35	10	30	23	1.88
6466791--6467147	177	2.0	176	96	0	660	40	11	8	39	1.72
6467679--6467713	16	2.2	16	100	0	70	37	17	25	20	1.94
6468625--6468664	20	2.0	20	90	0	62	32	27	10	30	1.89
6468727--6468782	22	2.6	22	88	2	87	30	28	12	28	1.93
6468904--6468955	20	2.5	20	81	6	59	23	9	28	38	1.86
6469647--6469681	18	1.9	18	88	0	52	17	34	14	34	1.90
6471389--6471426	20	1.9	20	100	0	76	28	13	0	57	1.36
6472297--6472364	29	2.3	30	78	14	77	51	0	10	38	1.36
6473727--6473806	40	2.0	39	80	2	88	32	13	15	38	1.86
6478665--6478697	12	2.8	12	95	0	57	30	9	21	39	1.84
6478677--6478948	82	3.3	82	92	1	429	29	14	20	36	1.92
6500834--6500906	31	2.4	31	88	4	103	36	10	1	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6500831--6500891	31	1.9	31	93	3	104	34	13	1	50	1.51
6504951--6505083	60	2.3	57	85	7	171	36	13	14	35	1.85
6506516--6506733	109	2.0	109	100	0	436	37	11	7	43	1.70
6507248--6507321	37	2.0	38	89	7	116	36	5	5	52	1.47
6508550--6508588	19	2.1	19	85	0	51	41	17	10	30	1.83
6511049--6511090	22	1.9	22	85	9	59	35	2	0	61	1.09
6523571--6523649	25	2.9	26	75	20	72	32	0	1	65	1.00
6525922--6525995	34	2.2	34	81	11	82	21	2	13	62	1.44
6525933--6525997	34	1.9	34	84	12	89	21	1	16	60	1.45
6526976--6527017	20	2.1	20	100	0	84	57	4	14	23	1.56
6527351--6527396	23	2.0	23	86	0	65	34	13	19	32	1.90
6528119--6528153	18	1.9	18	88	0	52	51	11	5	31	1.61
6528353--6528409	22	2.6	22	88	2	80	36	19	8	35	1.83
6528774--6528835	22	2.7	23	90	2	90	37	19	6	37	1.78
6529183--6529237	23	2.5	20	76	18	56	43	18	1	36	1.61
6528355--6529356	423	2.4	423	95	4	1830	37	13	8	40	1.75
6529198--6529258	21	2.7	22	82	10	70	37	19	6	36	1.78
6531793--6532641	181	4.7	183	95	2	1548	34	15	14	34	1.89
6534104--6534190	3	29.0	3	77	0	84	24	34	5	35	1.79
6534104--6534205	18	5.7	18	79	0	87	22	34	6	36	1.81
6534112--6534202	42	2.2	42	91	0	146	21	35	7	35	1.83
6535655--6537642	197	10.1	199	94	3	3427	32	15	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6535662--6537642	390	5.1	394	93	4	3361	32	15	15	37	1.88
6535655--6537642	783	2.5	778	93	4	3416	32	15	15	37	1.88
6537723--6537767	19	2.4	19	92	0	72	57	8	2	31	1.41
6539539--6539604	33	2.0	33	87	0	96	24	45	1	28	1.62
6541700--6541751	24	2.2	23	83	10	61	26	7	13	51	1.67
6541894--6541940	20	2.4	19	79	10	58	19	17	8	55	1.67
6542062--6542107	20	2.3	20	89	10	76	17	17	10	54	1.70
6545988--6546078	38	2.4	39	81	7	114	13	8	35	42	1.75
6546560--6546608	18	2.8	18	90	3	73	28	30	10	30	1.90
6547363--6547455	48	1.9	48	93	0	159	32	5	16	46	1.69
6547563--6547593	16	1.9	16	93	0	53	41	0	12	45	1.42
6547902--6547940	19	2.1	19	85	9	53	43	5	0	51	1.24
6550643--6550677	3	11.7	3	100	0	70	31	0	0	68	0.90
6553806--6553845	21	1.9	21	84	0	53	22	12	30	35	1.91
6556563--6556649	35	2.5	35	92	3	142	26	14	14	43	1.85
6564032--6564272	96	2.5	95	94	4	423	43	10	4	41	1.58
6576061--6576135	3	25.3	3	85	8	100	36	2	0	61	1.10
6581287--6582296	105	9.6	105	95	0	1732	33	26	18	22	1.96
6582475--6582759	84	3.4	83	77	7	274	29	25	21	23	1.99
6582589--6582740	80	1.9	80	86	2	216	27	25	23	23	2.00
6582990--6583061	3	24.3	3	84	8	94	36	2	0	61	1.11
6588379--6588403	13	1.9	13	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6605294--6605357	26	2.5	26	94	0	110	17	10	23	48	1.78
6605310--6605366	26	2.2	26	90	0	87	17	10	24	47	1.79
6616987--6617061	35	2.1	35	100	0	150	46	9	10	33	1.71
6617286--6617335	6	8.3	6	90	0	64	18	28	30	24	1.97
6617286--6617335	18	2.8	18	90	0	73	18	28	30	24	1.97
6625959--6626009	18	3.0	17	80	11	52	27	5	3	62	1.36
6628885--6628909	11	2.3	11	100	0	50	16	0	0	84	0.63
6629606--6629630	12	2.1	12	100	0	50	48	16	8	28	1.74
6631582--6631619	18	2.2	18	90	4	60	21	10	5	63	1.46
6632154--6632215	27	2.3	26	78	8	70	43	22	9	24	1.83
6636677--6637039	186	2.0	186	93	0	627	30	12	18	38	1.88
6637161--6637199	12	3.2	12	78	7	51	43	2	0	53	1.14
6640816--6640846	15	2.0	15	93	6	53	51	22	6	19	1.69
6640806--6640846	16	2.6	16	84	11	57	46	26	9	17	1.79
6641862--6641893	14	2.3	14	94	0	55	56	6	0	37	1.25
6642170--6642377	99	2.1	99	95	1	373	30	30	15	23	1.95
6642898--6642934	2	18.5	2	100	0	74	51	0	0	48	1.00
6653670--6653982	107	2.9	107	89	5	427	41	21	11	25	1.86
6653893--6654205	154	2.0	154	95	1	565	41	19	12	26	1.87
6658502--6658570	31	2.2	32	86	2	95	40	4	7	47	1.51
6658831--6658865	2	17.5	2	100	0	70	48	0	0	51	1.00
6659796--6659856	28	2.2	28	84	0	77	45	4	1	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6662032--6662118	23	3.6	23	82	11	120	48	10	14	26	1.76
6662010--6662133	50	2.5	50	100	0	248	48	10	12	28	1.74
6663218--6663267	17	3.1	16	82	5	57	44	2	0	54	1.11
6663864--6663926	13	4.9	13	78	16	69	39	0	1	58	1.07
6663914--6663972	19	3.1	20	81	18	65	38	1	0	59	1.08
6666877--6666927	20	2.5	21	90	3	77	60	3	13	21	1.49
6674203--6674232	14	2.1	14	93	0	51	26	16	13	43	1.85
6679594--6679649	29	1.9	29	85	0	76	17	33	28	19	1.95
6679665--6679727	33	1.9	33	93	0	108	11	39	23	25	1.88
6679665--6679777	10	10.3	10	68	14	55	10	36	29	23	1.89
6679666--6679777	33	3.4	32	77	12	102	10	35	29	24	1.89
6679719--6679751	14	2.4	14	94	0	57	6	30	39	24	1.79
6679738--6679775	20	1.9	20	100	0	76	10	28	36	23	1.88
6680747--6680774	2	14.0	2	100	0	56	50	0	0	50	1.00
6685502--6685537	18	2.0	18	88	0	54	38	11	27	22	1.88
6698003--6698100	50	1.9	51	87	6	146	37	16	16	29	1.90
6705016--6705042	2	13.5	2	100	0	54	0	51	0	48	1.00
6722165--6722205	21	2.0	21	100	0	82	19	24	17	39	1.92
6722211--6722252	20	2.1	20	100	0	84	40	19	21	19	1.92
6722241--6722332	20	4.7	20	74	12	82	29	31	18	20	1.96
6722527--6722574	22	2.2	22	96	0	87	18	45	16	18	1.85
6722993--6723086	40	2.3	40	81	0	107	14	13	24	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6722974--6723086	20	5.7	20	81	1	93	14	15	23	46	1.82
6723057--6723096	20	2.0	20	85	0	53	12	10	22	55	1.67
6723233--6723287	25	2.2	24	78	15	58	20	9	18	52	1.71
6724983--6725031	20	2.5	20	93	0	80	34	26	20	18	1.95
6725078--6725119	19	2.2	19	86	0	57	11	14	30	42	1.81
6725087--6725123	19	1.9	19	94	0	65	5	13	29	51	1.63
6725088--6725167	33	2.4	33	85	0	97	8	20	23	47	1.77
6725114--6725187	33	2.2	34	82	2	87	13	21	21	43	1.87
6725749--6725818	21	3.3	21	70	5	61	22	35	20	21	1.96
6725696--6725818	42	2.9	42	78	2	122	22	35	17	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32