genome.fa.s8053.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6772376

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  9  of  32  ( 3749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1633089--1633141	21	2.5	21	84	0	70	20	26	18	33	1.96
1633131--1633237	20	5.3	20	84	4	144	37	20	20	21	1.95
1633131--1633239	41	2.7	40	85	4	148	36	21	21	21	1.95
1633131--1633258	40	3.2	39	76	15	120	35	21	20	22	1.96
1634099--1634152	24	2.2	24	86	0	72	22	20	18	38	1.93
1635168--1635204	14	2.6	14	86	0	56	48	21	0	29	1.50
1636583--1636661	21	3.8	21	72	9	63	20	17	39	22	1.92
1636577--1636669	42	2.2	42	80	3	107	22	17	38	21	1.93
1637146--1637242	33	2.9	33	75	6	97	47	20	19	12	1.81
1637216--1637267	20	2.6	20	81	6	61	36	23	21	19	1.95
1637276--1637439	20	8.5	20	84	9	216	20	19	20	39	1.93
1637269--1637439	54	3.0	56	81	11	222	19	20	20	39	1.92
1639310--1639375	20	3.3	20	80	2	80	48	22	16	12	1.79
1639391--1639437	20	2.3	20	88	0	67	21	19	23	36	1.95
1640007--1640078	20	3.6	20	82	14	103	22	20	23	33	1.97
1640007--1640097	40	2.3	40	100	0	182	21	20	23	34	1.97
1640025--1640097	20	3.7	20	82	14	105	21	20	21	35	1.96
1640094--1640139	21	2.2	21	88	0	65	36	17	28	17	1.92
1645970--1646010	19	2.2	19	95	0	73	29	9	19	41	1.83
1649922--1649988	14	4.4	14	77	17	71	16	28	35	19	1.93
1649930--1649994	19	3.7	19	74	19	77	16	30	35	16	1.92
1649922--1649993	33	2.2	33	94	0	126	16	29	36	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649932--1650010	33	2.4	33	87	4	106	17	30	32	18	1.95
1651141--1651175	18	1.9	18	88	0	52	54	0	17	28	1.43
1654920--1655002	19	4.6	19	82	14	113	18	28	34	18	1.94
1654912--1654996	33	2.6	33	92	0	143	16	28	35	20	1.94
1654912--1654978	14	4.4	14	77	17	71	16	28	35	19	1.93
1656155--1656189	18	1.9	18	88	0	52	54	0	17	28	1.43
1662283--1662327	21	2.0	23	83	8	58	33	6	17	42	1.76
1673830--1673885	20	2.7	21	88	2	78	30	25	21	23	1.99
1673890--1673975	19	4.2	19	76	16	82	34	4	29	31	1.78
1674369--1674440	19	3.7	19	70	7	63	34	22	19	23	1.96
1674448--1674489	21	2.0	21	85	0	57	23	14	21	40	1.90
1674477--1674590	20	5.7	20	84	6	158	22	18	28	30	1.97
1674541--1674635	49	1.9	50	97	2	183	16	17	28	36	1.92
1674517--1674680	90	1.8	90	82	5	215	21	18	25	35	1.95
1674497--1674699	110	1.8	110	84	2	273	22	17	25	33	1.96
1674725--1674780	19	2.9	19	86	0	85	19	14	32	33	1.92
1688440--1688464	5	5.0	5	100	0	50	20	60	20	0	1.37
1690958--1691073	24	4.8	24	83	6	137	24	14	17	43	1.86
1690954--1691090	24	5.7	24	80	7	102	23	13	17	45	1.83
1692598--1692636	14	2.8	14	84	0	51	35	28	12	23	1.91
1694961--1695185	112	2.0	112	98	0	432	29	26	18	25	1.98
1697600--1697633	13	2.6	13	95	0	59	20	44	14	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700145--1700256	24	4.7	24	86	6	147	24	15	19	41	1.90
1700193--1700266	24	3.1	24	86	3	78	21	16	18	43	1.88
1703721--1704043	175	1.8	175	82	3	418	40	9	11	38	1.74
1708073--1708134	31	2.0	31	87	0	88	50	4	8	37	1.54
1708458--1708548	32	2.9	32	80	4	87	51	6	6	35	1.54
1710127--1710281	75	2.0	78	95	5	280	42	6	7	43	1.59
1725047--1725093	21	2.2	21	88	7	69	59	17	0	23	1.37
1726729--1726757	14	2.1	14	100	0	58	37	41	6	13	1.72
1727474--1727506	13	2.5	13	100	0	66	9	30	0	60	1.27
1729922--1730097	73	2.4	72	80	5	185	45	6	13	34	1.69
1731395--1731421	13	2.1	13	100	0	54	44	7	7	40	1.60
1740115--1740308	107	1.8	108	85	3	275	39	10	8	41	1.69
1740240--1740587	100	3.5	100	80	3	339	35	11	11	41	1.77
1740411--1740705	100	3.0	99	79	5	317	36	11	12	40	1.79
1740422--1740725	99	3.1	99	75	7	285	35	12	11	40	1.79
1741028--1741475	77	5.8	77	77	3	418	35	16	10	37	1.84
1741068--1741475	155	2.6	154	80	4	437	34	16	10	37	1.84
1758366--1758405	18	2.2	18	90	0	62	27	7	40	25	1.82
1758373--1758416	18	2.4	18	96	0	79	31	4	43	20	1.72
1765215--1765249	19	1.9	18	88	11	54	54	11	11	22	1.68
1774988--1775030	22	2.0	23	86	9	63	65	23	4	6	1.37
1780921--1780979	31	1.9	31	89	0	91	27	30	27	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780858--1780979	63	1.9	63	80	6	140	26	27	27	18	1.98
1783836--1783878	18	2.4	18	88	0	59	13	18	46	20	1.83
1788061--1788164	25	4.1	25	75	7	84	42	19	0	37	1.58
1797964--1798017	17	3.2	17	100	0	108	24	16	31	27	1.96
1805005--1805085	22	3.8	21	83	4	108	29	23	27	19	1.98
1806284--1806497	106	2.0	106	95	0	383	37	7	20	34	1.81
1806638--1806847	105	2.0	105	85	1	287	23	14	22	39	1.91
1806877--1806922	24	2.0	24	86	4	67	23	26	26	23	2.00
1813734--1813787	17	2.9	19	71	20	60	5	14	31	48	1.67
1814124--1814172	20	2.5	20	96	0	89	30	4	18	46	1.67
1818768--1818958	45	4.1	45	84	9	242	27	13	20	37	1.91
1818768--1818948	93	1.9	93	94	0	317	28	13	22	35	1.92
1828568--1828741	32	5.4	32	76	11	142	76	0	15	8	1.01
1828568--1828734	16	10.8	16	70	16	88	76	0	15	8	1.02
1828568--1828742	33	5.5	32	76	8	142	76	0	15	8	1.02
1828643--1828722	22	3.2	26	68	22	53	75	0	15	10	1.05
1828565--1828741	50	3.6	50	77	17	174	76	0	15	7	1.01
1828565--1828741	25	7.3	25	75	12	131	76	0	15	7	1.01
1829776--1829808	17	1.9	17	88	11	50	39	3	27	30	1.72
1830029--1830100	37	2.0	36	91	2	117	37	19	22	20	1.94
1830115--1830364	55	4.6	55	83	9	266	30	16	23	30	1.96
1830115--1830394	111	2.6	109	78	12	274	29	16	22	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830118--1830394	55	5.1	54	77	12	189	29	16	22	31	1.96
1833532--1833580	19	2.6	19	80	3	55	28	10	2	59	1.41
1834209--1834263	21	2.5	22	88	2	76	34	20	20	25	1.96
1834317--1834375	20	2.9	20	80	5	64	33	11	23	30	1.91
1834318--1834376	21	2.9	21	82	2	66	33	11	22	32	1.90
1839408--1839472	19	3.4	18	74	16	51	64	1	0	33	1.03
1847688--1847757	30	2.1	34	85	12	94	35	4	1	58	1.26
1856364--1856412	22	2.2	22	96	0	89	26	24	18	30	1.98
1859435--1859590	65	2.4	64	82	7	174	32	17	21	27	1.96
1859931--1859963	12	2.6	13	90	9	59	39	6	9	45	1.61
1862301--1862404	44	2.4	44	90	0	154	26	18	23	31	1.97
1879627--1879655	14	2.1	14	100	0	58	13	44	34	6	1.71
1879685--1879728	21	2.1	21	100	0	88	13	38	18	29	1.89
1882365--1882410	19	2.4	19	85	0	65	50	15	2	32	1.56
1887717--1887789	27	2.7	26	77	12	76	16	35	10	36	1.84
1886839--1888148	642	2.0	640	86	4	1813	23	30	11	34	1.91
1891679--1891742	25	2.6	25	92	0	101	28	20	10	40	1.86
1892466--1892763	150	2.0	147	95	4	537	39	20	6	33	1.79
1898083--1898143	21	3.2	21	65	29	64	31	4	21	42	1.74
1898075--1898193	35	3.3	37	88	8	174	31	5	19	43	1.72
1902691--1902774	37	2.3	37	87	6	118	33	4	19	42	1.72
1912308--1912337	16	1.9	16	93	6	53	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912351--1912380	13	2.4	12	89	10	51	66	0	6	26	1.16
1923085--1923133	24	2.0	24	100	0	98	32	0	12	55	1.37
1923441--1923566	66	1.9	66	91	0	207	44	12	12	30	1.80
1924194--1924257	32	2.0	32	87	0	92	50	7	14	28	1.70
1924536--1924586	21	2.5	20	81	9	57	35	9	23	31	1.87
1930731--1930757	12	2.2	12	100	0	54	55	0	0	44	0.99
1932600--1932645	13	3.8	13	78	21	55	30	0	0	69	0.89
1932606--1932650	15	2.9	15	84	12	56	28	0	0	71	0.87
1932600--1932641	20	2.1	20	91	8	68	30	0	0	69	0.89
1938209--1938366	55	2.8	56	79	6	158	34	21	15	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32