genome.fa.s8087.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8279816

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  31  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7078188--7078250	28	2.2	30	91	5	103	31	0	11	57	1.34
7078756--7078800	21	2.2	21	84	4	56	35	0	8	55	1.31
7079061--7079119	26	2.3	25	75	18	66	47	8	3	40	1.51
7081988--7082166	26	7.2	26	79	12	162	43	2	10	44	1.50
7081982--7082231	14	20.2	12	71	15	111	42	2	8	46	1.48
7081934--7082202	124	2.2	123	90	2	409	43	1	8	45	1.46
7082171--7082244	38	1.9	38	83	5	96	45	4	5	44	1.45
7082426--7082458	17	1.9	17	93	0	57	36	6	12	45	1.66
7082372--7082451	24	3.3	23	71	21	67	38	3	8	48	1.52
7084608--7084638	15	2.1	14	94	5	53	54	6	0	38	1.26
7084613--7084659	16	3.0	16	84	9	53	59	10	0	29	1.31
7084700--7084781	34	2.5	34	83	13	93	48	13	0	37	1.42
7084822--7084913	46	2.0	48	87	8	136	46	11	0	41	1.41
7084822--7084926	47	2.2	48	85	10	135	47	12	0	40	1.41
7084894--7084982	41	2.2	40	78	8	90	46	10	1	42	1.45
7085469--7085602	29	4.6	29	92	1	207	21	30	31	16	1.95
7085589--7085680	28	2.9	34	79	18	133	17	32	22	27	1.96
7085671--7085709	20	2.0	20	94	0	69	12	17	30	38	1.88
7085697--7085743	21	2.2	21	100	0	94	14	29	25	29	1.95
7085671--7085710	9	4.2	9	81	12	53	12	17	32	37	1.87
7086104--7086150	21	2.2	21	100	0	94	29	25	29	14	1.95
7086137--7086176	9	4.2	9	81	12	53	37	32	17	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7086138--7086176	20	2.0	20	94	0	69	38	30	17	12	1.88
7086256--7086360	29	3.6	29	92	2	158	16	31	31	20	1.95
7086641--7086691	26	2.0	26	88	3	77	45	11	35	7	1.70
7086876--7087007	45	3.0	45	79	14	125	40	0	12	47	1.41
7087171--7087217	16	3.0	16	84	9	53	29	0	10	59	1.31
7087192--7087222	15	2.1	14	94	5	53	38	0	6	54	1.26
7089374--7089406	17	1.9	17	93	0	57	45	12	6	36	1.66
7089395--7089459	25	2.8	22	71	17	60	49	9	3	38	1.51
7089614--7089850	11	19.2	11	69	22	66	45	9	2	43	1.48
7089598--7089684	38	2.4	37	81	9	99	51	4	2	41	1.35
7089614--7089841	14	17.1	13	72	18	111	45	8	2	43	1.47
7089614--7089841	26	9.2	26	72	12	165	45	8	2	43	1.47
7089630--7089898	124	2.2	123	90	2	418	45	8	1	43	1.46
7092727--7092785	26	2.3	24	78	16	64	40	3	8	47	1.51
7093524--7093636	50	2.4	47	80	15	128	49	7	0	41	1.38
7093596--7093658	28	2.2	30	91	5	103	57	11	0	31	1.34
7093600--7093665	28	2.4	28	85	10	98	56	10	0	33	1.34
7093635--7093683	21	2.3	21	85	3	71	53	16	0	30	1.43
7094312--7094373	29	2.1	29	96	0	115	19	35	30	14	1.92
7099634--7099689	16	3.6	16	85	2	78	35	10	21	32	1.88
7102793--7102832	21	1.9	21	94	0	71	30	15	7	47	1.72
7102821--7102892	33	2.2	32	85	4	101	33	8	12	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7102878--7102932	13	4.2	13	75	13	58	34	3	12	49	1.59
7103128--7103184	21	2.7	21	91	0	96	19	26	26	28	1.99
7103351--7103401	16	3.2	16	70	8	50	35	7	13	43	1.73
7103495--7103526	16	2.0	17	88	11	50	43	21	21	12	1.86
7126261--7126312	24	2.2	24	92	0	86	21	21	28	28	1.98
7126261--7126322	24	2.6	24	86	0	79	24	17	30	27	1.97
7127153--7127197	21	2.0	23	87	8	67	28	33	22	15	1.95
7127805--7127892	23	3.8	23	72	14	81	31	25	23	19	1.98
7133267--7133311	21	2.0	23	87	8	67	28	33	22	15	1.95
7133934--7134021	23	3.8	23	71	14	81	31	25	23	19	1.98
7138887--7138942	28	2.0	28	100	0	112	39	14	14	32	1.86
7143416--7143501	29	2.9	30	84	6	106	25	41	17	15	1.88
7143443--7143530	29	3.0	29	83	0	104	26	38	20	14	1.91
7143496--7143558	29	2.2	29	91	0	99	23	34	23	17	1.96
7143416--7143530	58	2.0	60	82	6	146	25	40	19	15	1.91
7143599--7143663	32	2.0	32	100	0	130	12	30	29	27	1.93
7143649--7143692	23	1.9	23	100	0	88	22	22	27	27	1.99
7144116--7144177	28	2.1	30	94	5	110	30	0	12	56	1.37
7144471--7144515	21	2.2	21	84	4	56	35	0	8	55	1.31
7147528--7148280	60	13.4	49	77	19	491	41	0	12	46	1.42
7147524--7147951	60	7.2	60	96	0	763	40	0	13	45	1.44
7147588--7148228	119	5.6	108	91	5	886	41	0	12	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7147697--7147842	10	14.7	10	70	18	65	41	0	14	44	1.45
7147891--7148109	49	4.3	45	86	12	195	40	0	12	46	1.42
7148033--7148113	24	3.3	24	65	3	72	39	0	14	45	1.45
7148093--7148119	10	2.7	10	100	0	54	40	0	18	40	1.51
7148044--7148281	59	4.2	60	85	10	340	41	0	11	47	1.40
7148111--7148197	18	4.5	18	64	20	50	44	0	9	45	1.35
7148131--7148272	21	6.6	21	65	21	71	40	0	9	49	1.36
7148163--7148277	48	2.3	49	92	2	187	40	0	11	47	1.39
7150830--7150870	22	1.9	21	85	5	55	53	19	0	26	1.45
7150971--7151017	14	3.5	13	77	11	51	2	40	0	57	1.11
7151119--7151185	33	2.0	33	100	0	134	26	29	11	31	1.92
7151332--7151391	29	2.1	29	96	0	111	10	21	43	25	1.83
7151924--7151998	26	2.8	28	80	11	84	30	14	13	41	1.84
7152175--7152236	28	2.1	30	85	11	85	46	9	11	32	1.72
7154580--7154693	34	3.2	34	86	6	147	34	3	18	43	1.67
7158891--7158926	16	2.2	16	90	0	63	25	13	25	36	1.93
7159071--7159135	21	3.4	21	64	25	54	32	3	16	47	1.62
7159063--7159185	36	3.4	37	81	9	146	33	4	17	44	1.68
7165651--7165684	2	17.0	2	100	0	68	50	0	0	50	1.00
7167392--7167459	23	3.0	23	95	0	118	17	16	7	58	1.59
7169634--7169667	18	1.9	18	88	5	52	44	14	17	23	1.86
7171018--7171103	31	2.7	32	78	10	88	10	27	32	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7171998--7172023	2	13.0	2	100	0	52	50	0	0	50	1.00
7181032--7181102	3	23.3	3	85	2	97	60	0	0	39	0.97
7193080--7193122	7	6.6	7	79	15	56	16	34	27	20	1.94
7193080--7193122	13	3.3	14	87	9	56	16	34	27	20	1.94
7200226--7200273	19	2.5	19	83	10	53	12	31	29	27	1.93
7206868--7206912	21	2.1	21	88	8	65	15	26	22	35	1.94
7209567--7209630	7	9.1	7	92	0	110	28	46	0	25	1.53
7214339--7214370	2	16.0	2	100	0	64	50	0	0	50	1.00
7214367--7214405	17	2.2	18	90	4	62	41	2	2	53	1.28
7214458--7214522	24	2.6	25	81	13	73	56	0	3	40	1.15
7214723--7214767	21	2.2	20	84	4	54	64	0	2	33	1.06
7214727--7214767	14	2.8	15	82	13	50	63	0	2	34	1.08
7215162--7215209	24	2.0	24	100	0	96	16	8	29	45	1.76
7216178--7216239	3	20.7	3	77	6	54	58	1	0	40	1.08
7216171--7216243	12	5.8	12	75	15	67	56	1	0	42	1.08
7216193--7216236	9	4.9	9	82	0	61	54	0	0	45	0.99
7216193--7216249	18	3.2	18	87	5	71	54	0	0	45	0.99
7216377--7216524	45	3.3	45	86	0	215	36	18	20	23	1.95
7216542--7216645	45	2.3	45	84	0	136	31	18	23	26	1.97
7216412--7217077	121	5.5	121	93	0	1102	32	21	22	23	1.98
7216653--7216766	45	2.5	45	84	2	138	29	22	23	23	1.99
7216774--7216881	45	2.4	45	87	3	153	28	20	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7216905--7217008	45	2.3	45	86	3	147	32	20	22	25	1.97
7217508--7217587	22	3.6	22	73	18	76	37	12	15	35	1.85
7224067--7224117	22	2.3	22	83	6	59	49	7	19	23	1.74
7227061--7227099	2	21.0	2	85	15	57	48	0	0	51	1.00
7227096--7227135	17	2.3	18	91	4	64	40	2	2	55	1.27
7227225--7227285	24	2.5	24	82	12	72	55	0	3	40	1.16
7227113--7227396	154	1.8	156	81	8	357	49	6	7	36	1.56
7227488--7227532	21	2.2	20	88	4	63	66	2	0	31	1.04
7227487--7227520	14	2.5	14	85	4	52	67	2	0	29	1.05
7228919--7228975	3	19.0	3	78	7	62	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37