genome.fa.s8087.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8279816

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  32  of  37  ( 4336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7228919--7228977	27	2.3	26	80	16	70	59	0	0	40	0.97
7228912--7228973	15	4.3	15	74	16	51	56	0	0	43	0.99
7228937--7228987	24	2.1	24	92	0	84	54	0	0	45	0.99
7233749--7233786	2	19.0	2	100	0	76	50	0	0	50	1.00
7234014--7234083	31	2.3	31	87	0	95	31	1	14	52	1.50
7234063--7234104	21	2.0	20	86	4	57	30	0	7	61	1.22
7234526--7234577	24	2.2	24	86	10	72	13	19	15	51	1.75
7238332--7238377	23	2.0	23	100	0	92	43	26	30	0	1.55
7242242--7242610	20	18.5	20	85	4	458	34	26	18	20	1.96
7243284--7243330	24	2.0	24	87	8	69	25	14	21	38	1.92
7243505--7243529	12	2.1	12	100	0	50	72	0	28	0	0.86
7245836--7246163	19	18.5	19	80	15	409	46	17	21	14	1.83
7245836--7246163	33	9.3	34	82	13	325	46	17	21	14	1.83
7245864--7246183	161	2.0	157	93	3	543	46	16	21	15	1.83
7245864--7246183	52	6.0	52	93	4	541	46	16	21	15	1.83
7246190--7246291	19	5.6	19	85	12	151	14	23	17	44	1.86
7246398--7246434	14	2.6	14	91	0	65	45	21	0	32	1.52
7246429--7246501	12	6.0	12	67	20	53	57	16	1	24	1.47
7246415--7246487	38	1.9	38	97	0	137	53	16	1	28	1.51
7248304--7248438	19	7.6	19	76	16	137	45	24	19	10	1.81
7248360--7248416	14	3.7	14	77	20	60	45	24	21	8	1.80
7248341--7248433	33	2.8	33	98	0	177	47	22	20	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7248304--7248438	52	2.5	54	75	18	131	45	24	19	10	1.81
7248434--7248562	19	7.3	19	75	17	125	8	17	28	45	1.77
7248434--7248525	33	2.8	33	93	3	150	7	18	28	45	1.76
7248606--7248985	93	4.1	93	98	0	744	46	18	12	22	1.83
7248606--7248985	185	2.0	186	98	0	744	46	18	12	22	1.83
7250690--7250779	14	5.7	14	74	23	81	42	23	25	8	1.83
7250682--7250796	33	3.5	33	95	0	212	45	20	24	9	1.81
7250689--7250801	19	6.8	18	72	23	88	43	22	24	9	1.83
7250813--7250867	14	3.6	14	73	21	56	9	27	23	40	1.85
7250988--7251058	33	2.2	33	92	0	115	47	18	22	11	1.80
7251240--7251294	22	2.5	22	81	0	74	20	16	40	23	1.91
7251440--7251633	20	9.6	20	82	5	221	19	19	25	35	1.95
7251440--7251633	60	3.2	60	83	0	253	19	19	25	35	1.95
7251626--7251702	21	3.7	20	70	13	57	27	16	23	32	1.96
7251688--7251739	20	2.6	20	96	0	95	21	13	26	38	1.90
7251940--7251997	28	2.0	30	83	10	75	65	5	8	20	1.40
7252087--7252111	13	1.9	13	100	0	50	52	8	0	40	1.31
7252143--7252173	2	15.5	2	100	0	62	48	0	0	51	1.00
7252368--7252421	19	2.8	19	75	10	65	42	0	31	25	1.55
7252645--7252832	2	96.5	2	71	16	137	46	2	4	46	1.36
7252965--7252998	17	2.0	17	94	0	59	50	8	0	41	1.34
7253080--7253123	7	6.3	7	89	0	70	47	36	0	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7253420--7253446	13	2.1	13	100	0	54	44	0	0	55	0.99
7253486--7253550	2	33.0	2	89	3	96	47	3	1	47	1.27
7253543--7253637	48	2.0	48	85	2	127	51	7	6	34	1.55
7253974--7254026	22	2.2	24	90	9	83	35	1	0	62	1.06
7254029--7254092	7	9.3	7	80	10	78	46	37	0	15	1.46
7254029--7254092	14	4.6	14	83	11	87	46	37	0	15	1.46
7254910--7254992	24	3.5	24	83	0	103	38	16	16	27	1.91
7256311--7256346	12	3.0	12	100	0	72	33	0	16	50	1.46
7256587--7256647	21	2.9	21	90	2	95	29	24	26	19	1.99
7256681--7256725	22	2.0	22	86	4	63	28	31	26	13	1.94
7257840--7257921	21	3.9	21	96	1	146	29	24	28	18	1.98
7258982--7259015	15	2.3	15	89	0	50	44	2	11	41	1.56
7259424--7259514	23	4.0	23	92	0	137	19	28	26	25	1.99
7264932--7264968	14	2.6	14	100	0	74	21	8	32	37	1.83
7264987--7265013	13	2.1	13	100	0	54	37	14	25	22	1.93
7265423--7265467	17	2.9	15	87	12	72	51	8	0	40	1.33
7265542--7265613	7	10.3	7	80	0	72	48	33	0	18	1.48
7265456--7265559	48	2.1	49	83	3	129	50	12	6	30	1.66
7265763--7265814	23	2.3	23	89	0	86	48	3	0	48	1.20
7265771--7265817	14	3.7	14	71	26	50	51	4	0	44	1.21
7266088--7266138	16	3.2	16	85	0	75	43	13	17	25	1.86
7267111--7267182	29	2.5	29	100	0	144	48	11	4	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7269387--7269446	31	1.9	31	93	0	102	28	15	25	31	1.95
7270758--7270817	28	2.1	28	90	0	93	25	21	8	45	1.80
7271052--7271088	17	2.2	17	90	0	56	18	27	13	40	1.88
7272064--7272095	14	2.4	14	94	5	57	18	0	12	68	1.20
7272684--7272723	20	2.0	20	85	0	53	22	27	10	40	1.86
7275843--7275967	57	2.1	60	79	7	141	48	7	3	41	1.47
7276104--7276128	13	1.9	13	100	0	50	60	0	8	32	1.26
7281721--7281754	17	2.0	17	88	0	50	35	0	5	58	1.22
7281783--7281808	3	8.7	3	100	0	52	30	0	0	69	0.89
7287219--7287289	16	4.3	16	70	19	65	35	2	5	56	1.38
7289396--7289443	20	2.4	20	96	0	87	14	37	20	27	1.92
7296250--7296362	35	3.2	34	85	5	145	43	21	0	34	1.59
7297418--7297529	35	3.2	34	88	5	161	36	0	20	41	1.59
7298726--7298775	2	25.0	2	100	0	100	50	0	0	50	1.00
7299972--7300028	29	2.0	29	82	6	71	35	1	29	33	1.68
7306776--7306808	2	16.5	2	93	0	57	45	0	0	54	0.99
7309660--7309722	31	2.0	31	100	0	126	52	9	0	38	1.34
7309727--7309786	20	2.8	21	75	10	59	43	3	0	53	1.17
7309790--7309853	33	1.9	33	84	6	85	50	0	4	45	1.22
7309830--7309878	21	2.3	22	80	16	59	42	0	0	57	0.99
7309835--7309915	23	3.3	25	75	16	73	44	0	1	54	1.08
7309854--7309928	35	2.1	36	80	11	93	45	0	1	53	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7309854--7309949	34	2.8	35	75	13	92	42	0	3	54	1.16
7309876--7309920	23	2.0	23	90	0	72	44	0	2	53	1.13
7309877--7309927	23	2.2	23	85	0	66	47	0	1	50	1.12
7309946--7310020	27	2.8	28	78	13	77	48	5	1	45	1.33
7310093--7310152	30	1.9	32	86	6	88	50	1	0	48	1.11
7310108--7310161	24	2.4	23	79	17	60	53	0	0	46	1.00
7314658--7314682	13	1.9	13	100	0	50	88	4	0	8	0.64
7314978--7315016	20	2.0	19	85	5	51	30	23	0	46	1.53
7317298--7317370	25	3.0	24	68	24	62	26	6	4	63	1.38
7319568--7319683	51	2.3	50	83	4	153	27	21	23	27	1.99
7321005--7321029	2	12.5	2	100	0	50	52	0	0	48	1.00
7326024--7326067	14	3.0	14	81	12	52	43	9	13	34	1.76
7326028--7326059	16	2.0	16	93	0	55	37	9	12	40	1.75
7326245--7326301	21	2.7	21	94	0	96	26	26	26	21	1.99
7326497--7326551	13	4.2	13	75	13	58	49	12	3	34	1.59
7326537--7326635	33	3.0	33	91	1	155	45	14	7	33	1.71
7326630--7326669	21	1.9	21	94	0	71	47	7	15	30	1.72
7329099--7329156	27	2.1	28	84	9	75	27	17	10	44	1.81
7336549--7336617	22	3.1	22	93	4	113	15	23	42	18	1.89
7340811--7340843	7	4.9	7	88	3	50	42	0	0	57	0.98
7346541--7346697	58	2.6	59	74	11	133	42	5	19	33	1.75
7348001--7348071	26	2.7	26	82	4	79	60	12	1	25	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7349299--7349373	38	2.0	38	84	2	98	41	20	10	28	1.85
7350189--7350300	37	3.0	37	93	0	188	39	13	16	31	1.87
7350831--7350956	40	3.4	34	72	18	92	27	3	3	65	1.23
7350881--7351023	4	35.8	4	69	22	54	24	3	0	71	1.06
7350825--7350991	37	4.5	36	73	16	112	26	3	2	67	1.20
7350952--7351072	5	22.6	5	71	18	50	20	6	0	71	1.13
7350907--7351015	36	3.1	35	81	13	109	22	3	0	73	1.05
7350904--7351025	20	6.3	20	68	16	62	22	3	0	72	1.04
7354166--7354216	13	4.0	13	76	2	59	78	3	15	1	0.99
7354168--7354227	25	2.4	25	89	8	88	75	5	16	3	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37