Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8279816

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  37  of  37  ( 4336 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8262310--8262403
33
2.9
32
92
4
152
45
28
18
7
1.76
8262399--8262533
19
7.6
19
76
16
137
10
19
24
45
1.81
8262421--8262477
14
3.7
14
77
20
60
8
21
24
45
1.80
8262404--8262496
33
2.8
33
98
0
177
9
20
22
47
1.79
8264379--8264415
14
2.6
14
95
0
65
35
0
21
43
1.53
8264327--8264398
37
1.9
38
94
2
128
29
1
16
52
1.52
8264520--8264621
19
5.6
19
84
13
151
44
17
23
14
1.86
8264628--8264941
19
18.1
18
80
15
362
14
21
17
45
1.84
8264628--8264938
51
6.0
51
93
4
523
14
21
17
45
1.84
8264628--8264938
158
2.0
155
93
4
527
14
21
17
45
1.84
8267832--8268239
20
20.5
20
85
5
477
20
18
25
35
1.95
8271174--8271215
18
2.3
18
95
0
75
23
16
40
19
1.91
8271182--8271221
18
2.2
18
95
0
71
25
20
37
17
1.94
8271620--8271680
2
31.0
2
90
3
97
49
1
1
47
1.21
8272990--8273033
21
2.1
21
91
0
70
25
25
22
27
2.00
8273561--8273624
23
2.8
23
90
0
101
28
25
26
20
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37

The End!