genome.fa.s8124.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008124.1 Hibiscus syriacus cultivar Beakdansim tig00110678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3296903

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  11  of  19  ( 2165 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1889371--1889450	33	2.4	33	95	0	142	47	22	21	8	1.78
1889446--1889573	19	7.1	19	68	19	69	10	25	18	45	1.82
1889451--1889573	33	3.5	33	83	10	147	10	24	18	46	1.81
1889509--1889573	21	3.1	21	80	4	87	10	24	15	49	1.76
1891483--1891539	14	3.7	14	72	20	51	43	24	22	8	1.81
1891481--1891588	33	3.3	33	94	0	180	47	26	18	7	1.75
1891497--1891588	19	5.4	18	72	24	65	46	28	17	7	1.75
1891514--1891572	14	3.9	14	76	20	64	47	28	16	6	1.72
1891584--1891740	19	8.6	19	79	10	157	10	18	24	46	1.81
1891589--1891725	37	3.9	35	73	18	131	10	18	23	48	1.78
1893642--1893677	14	2.6	14	95	0	63	33	0	22	44	1.53
1893784--1893878	19	5.4	19	80	18	116	45	18	22	13	1.85
1893784--1893897	49	2.2	52	92	6	189	43	19	23	13	1.86
1893887--1894043	19	8.7	19	81	15	199	14	23	17	44	1.85
1893893--1894065	53	3.3	53	98	1	339	13	23	16	46	1.83
1896514--1896560	24	2.0	24	86	0	67	40	21	12	25	1.89
1896527--1896581	24	2.3	24	83	0	65	40	21	12	25	1.89
1897249--1897477	20	11.4	20	79	5	203	19	16	25	38	1.92
1897249--1897439	40	4.8	40	88	5	226	20	16	25	37	1.93
1897448--1897499	20	2.6	20	96	0	95	17	23	17	42	1.89
1898080--1898114	15	2.2	16	95	5	63	54	0	0	45	0.99
1898062--1898140	37	2.1	37	83	4	97	53	1	1	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898517--1898573	20	2.8	20	100	0	114	36	10	28	24	1.88
1899388--1899464	35	2.2	35	90	0	118	41	23	1	33	1.63
1901949--1902004	3	19.0	3	85	10	80	33	0	0	66	0.92
1902041--1902072	11	2.9	11	100	0	64	37	43	18	0	1.51
1902318--1902367	25	2.0	25	96	0	91	28	26	12	34	1.92
1907197--1907484	144	2.0	145	97	2	546	32	23	9	34	1.87
1907982--1908023	12	3.6	11	87	9	57	69	11	14	4	1.34
1909190--1909241	4	13.0	4	87	0	77	50	26	0	23	1.50
1909715--1909942	106	2.2	102	82	6	271	30	19	11	38	1.88
1909888--1910007	36	3.4	36	79	6	113	30	20	12	35	1.90
1910254--1910338	29	3.0	29	87	1	118	27	10	16	45	1.80
1910318--1910364	25	1.9	25	86	4	69	25	10	14	48	1.76
1910465--1910585	30	3.5	35	73	15	119	31	13	10	44	1.78
1910449--1910601	67	2.3	65	91	3	236	30	13	11	45	1.77
1911093--1911136	15	2.9	15	93	0	70	31	20	4	43	1.72
1911686--1911832	40	3.4	43	77	10	149	24	29	19	25	1.98
1911986--1912031	3	16.3	3	79	20	55	30	0	0	69	0.89
1911980--1912026	23	2.0	23	84	8	60	27	2	2	68	1.13
1916387--1916507	64	1.9	64	84	1	163	28	19	23	28	1.99
1916826--1917220	216	1.8	216	94	1	702	49	7	11	30	1.68
1917409--1917454	14	3.0	15	82	17	67	4	13	32	50	1.61
1917896--1917956	19	3.0	20	86	9	72	44	0	4	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918037--1918100	16	3.9	16	74	11	58	40	7	6	45	1.58
1917999--1918071	20	3.4	20	74	17	65	39	6	1	52	1.37
1918022--1918112	33	2.9	32	82	9	109	41	6	4	47	1.49
1918127--1918338	18	11.9	18	68	22	94	42	8	7	41	1.62
1918070--1918228	65	2.6	61	91	6	241	42	6	8	41	1.63
1918192--1918340	38	4.0	38	80	12	157	42	9	6	41	1.62
1918276--1918342	33	2.1	33	91	5	111	46	8	5	38	1.60
1918205--1918340	18	7.2	20	73	22	116	43	9	6	40	1.63
1918315--1918361	22	2.2	21	85	11	60	40	4	10	44	1.59
1918389--1918444	25	2.2	25	87	6	78	37	8	3	50	1.51
1918412--1918468	18	3.1	18	85	10	62	42	7	3	47	1.47
1918513--1918726	31	7.1	31	72	18	150	42	7	8	40	1.64
1918539--1918577	15	2.5	16	83	4	53	48	5	10	35	1.59
1918511--1918741	63	3.8	62	75	15	191	42	7	8	41	1.62
1918586--1918639	17	3.4	17	69	23	53	40	9	7	42	1.65
1918632--1918737	54	2.0	54	88	3	160	42	6	7	43	1.59
1918629--1918753	55	2.4	52	84	11	170	43	6	7	43	1.57
1919766--1919834	2	34.5	2	94	0	120	49	1	1	47	1.19
1922101--1922139	21	1.9	20	84	5	51	56	5	0	38	1.22
1926879--1926927	19	2.6	19	90	3	73	28	16	28	26	1.97
1927234--1927284	19	2.7	19	93	0	84	31	15	27	25	1.96
1928572--1928615	21	2.1	21	87	8	63	29	0	29	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1928582--1928625	7	6.4	7	92	5	72	34	0	25	40	1.56
1929584--1929626	21	2.0	21	90	0	68	13	27	37	20	1.91
1931022--1931069	19	2.5	20	82	3	62	29	12	6	52	1.63
1932347--1932388	21	2.0	21	90	9	68	16	28	38	16	1.91
1933777--1933824	19	2.5	20	82	3	62	31	10	6	52	1.60
1935100--1935238	20	6.8	20	80	3	170	14	28	36	20	1.92
1935100--1935238	61	2.3	61	86	2	190	14	28	36	20	1.92
1935099--1935238	41	3.4	41	95	1	237	15	27	36	20	1.93
1940852--1940943	45	2.0	46	87	6	134	29	13	20	36	1.90
1941448--1941494	22	2.1	22	92	0	76	42	10	14	31	1.80
1948596--1948712	58	2.0	58	96	0	216	28	25	17	29	1.97
1954891--1954927	20	1.9	19	89	10	58	24	32	24	18	1.97
1960617--1960654	20	1.9	20	94	0	67	26	31	26	15	1.96
1960639--1960702	23	2.7	23	80	4	65	21	37	23	17	1.94
1961371--1961408	12	3.2	12	88	0	58	26	50	0	23	1.50
1966005--1966062	2	29.0	2	96	0	107	1	0	48	50	1.11
1966220--1966521	116	2.6	116	85	2	401	26	23	15	34	1.95
1968275--1968331	29	2.0	29	82	0	69	42	7	22	28	1.80
1968915--1968959	20	2.2	20	84	0	63	46	13	24	15	1.82
1969970--1970002	15	2.1	16	94	5	59	57	12	3	27	1.49
1970995--1971039	2	22.5	2	100	0	90	51	0	0	48	1.00
1973691--1973742	9	6.1	9	76	13	56	34	0	1	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1973690--1973739	17	3.0	17	91	2	75	36	0	4	60	1.16
1974045--1974407	182	2.0	183	98	0	710	20	20	31	28	1.97
1975643--1975709	33	2.0	33	82	5	82	17	38	20	22	1.93
1976137--1976180	13	3.4	13	80	0	52	15	2	13	68	1.31
1980487--1980523	2	19.0	2	94	5	67	51	0	0	48	1.00
1984006--1984042	14	2.6	14	95	4	65	64	0	2	32	1.07
1984055--1984079	2	12.5	2	100	0	50	52	0	0	48	1.00
1984460--1984561	33	3.1	33	92	0	177	29	9	17	43	1.81
1984611--1984667	3	19.7	3	86	13	84	70	0	0	29	0.88
1985014--1985541	84	6.3	84	85	3	688	23	19	25	30	1.98
1985014--1985536	169	3.1	167	89	3	750	23	19	25	31	1.98
1985659--1986189	110	4.9	110	92	1	867	24	19	22	33	1.97
1989933--1989978	2	23.5	2	95	4	85	50	0	0	50	1.00
1990351--1990415	33	2.0	33	91	5	107	26	13	21	38	1.91
1990469--1990535	3	23.3	3	80	19	81	70	0	0	29	0.88
1995641--1995689	21	2.3	21	92	0	80	22	12	30	34	1.91
2005901--2005955	27	2.0	27	100	0	92	32	38	10	18	1.85
2007579--2007698	67	1.9	63	80	13	138	37	4	2	55	1.32
2007769--2008013	51	4.8	50	88	2	328	24	14	14	46	1.81
2007769--2008015	101	2.4	101	87	2	352	24	14	14	46	1.81
2021121--2021251	58	2.3	58	78	7	142	35	16	12	35	1.86
2021294--2021371	33	2.4	34	73	6	79	30	19	2	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2024232--2024256	4	6.2	4	100	0	50	24	0	0	76	0.80
2024618--2025351	268	2.8	264	84	3	902	38	10	17	33	1.85
2025528--2025778	116	2.2	112	84	5	317	49	6	10	32	1.64
2025739--2025777	16	2.5	15	92	8	69	41	5	7	46	1.55
2025760--2025962	74	2.8	74	81	5	218	43	7	13	35	1.72
2025760--2025987	74	3.1	74	74	9	202	42	7	13	37	1.72
2026863--2027127	99	2.7	98	85	1	377	37	19	8	34	1.82
2028679--2028763	36	2.3	36	83	2	107	16	4	29	49	1.66
2028685--2028780	33	2.8	33	82	7	95	17	6	29	46	1.72
2028718--2028794	33	2.3	33	82	8	95	16	6	27	49	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19