genome.fa.s8124.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008124.1 Hibiscus syriacus cultivar Beakdansim tig00110678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3296903

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  15  of  19  ( 2165 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2619266--2619345	26	3.0	26	88	5	115	41	16	20	22	1.90
2620325--2620379	26	2.1	26	82	0	65	18	9	12	60	1.58
2620767--2620795	13	2.3	13	94	5	51	48	0	10	41	1.37
2623975--2624041	30	2.2	30	97	0	125	23	19	25	31	1.98
2627627--2627681	21	2.6	21	91	0	92	23	20	21	34	1.97
2628010--2628090	21	3.7	21	80	9	108	40	16	25	17	1.89
2629093--2629315	105	2.1	105	84	0	286	38	22	15	23	1.92
2629456--2629666	106	2.0	106	91	1	343	32	20	8	38	1.82
2630898--2630970	22	3.3	22	98	0	137	21	32	16	28	1.95
2634637--2634847	106	2.0	106	99	0	413	33	21	7	36	1.82
2636078--2636129	22	2.4	22	93	0	95	21	32	15	30	1.94
2636841--2636901	31	2.0	31	83	0	77	24	19	22	32	1.97
2636887--2636959	30	2.4	30	95	0	128	24	20	24	30	1.99
2637876--2637911	17	2.1	18	89	5	56	69	16	0	13	1.19
2638648--2638675	13	2.2	13	100	0	56	28	25	14	32	1.94
2639712--2639776	18	3.4	18	82	12	76	29	29	21	20	1.98
2639719--2639780	21	3.1	21	79	13	76	30	25	20	22	1.98
2639703--2639780	39	2.0	39	92	0	129	28	29	21	20	1.98
2641203--2641240	18	2.2	17	95	4	67	26	23	0	50	1.50
2644122--2644164	12	3.3	12	79	17	50	51	18	16	13	1.77
2644829--2645288	229	2.0	231	99	0	906	29	16	21	32	1.96
2646678--2646717	21	1.9	21	94	0	71	30	15	7	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2646712--2646810	33	3.0	33	92	1	155	33	7	14	45	1.71
2646796--2646850	13	4.2	13	75	13	58	34	3	12	49	1.59
2647247--2647302	15	3.6	15	79	9	67	32	12	12	42	1.80
2647266--2647299	18	1.9	18	94	5	61	38	11	11	38	1.79
2650994--2651021	14	2.0	14	100	0	56	50	14	0	35	1.43
2652417--2652463	22	2.1	22	100	0	94	36	4	12	46	1.62
2656640--2656700	12	5.1	12	81	15	81	67	1	0	31	1.01
2656642--2656706	17	3.7	17	74	25	64	67	1	0	30	1.00
2656630--2656700	25	2.9	24	87	8	99	69	1	0	29	0.98
2659858--2659896	21	1.9	21	94	5	71	25	28	12	33	1.93
2660662--2660704	18	2.4	18	92	0	77	25	4	9	60	1.47
2662625--2662747	65	2.0	60	82	10	149	44	2	8	44	1.46
2671371--2671430	31	1.9	31	89	0	84	41	15	11	31	1.82
2672168--2672243	31	2.5	31	84	0	107	17	10	17	55	1.69
2673551--2673629	31	2.5	31	88	8	108	50	13	11	24	1.74
2673789--2673930	59	2.4	58	89	4	205	39	9	16	34	1.81
2673938--2673976	17	2.4	17	86	4	53	41	5	10	43	1.61
2676048--2676120	24	3.0	24	81	0	92	32	24	20	21	1.97
2676278--2676332	15	3.7	15	77	0	65	40	20	1	38	1.63
2676808--2676877	20	3.5	20	92	5	106	31	25	11	31	1.91
2679130--2679339	65	3.2	65	79	8	216	27	18	24	30	1.98
2686619--2686654	12	3.0	12	91	0	63	36	25	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2687025--2687178	64	2.4	64	83	6	179	27	20	19	32	1.97
2693293--2693328	12	3.0	12	91	0	63	36	25	5	33	1.79
2693699--2693840	64	2.2	64	82	7	164	27	20	19	33	1.96
2696757--2696805	19	2.7	17	84	9	53	26	20	28	24	1.99
2696777--2696986	65	3.2	64	79	9	196	28	18	22	30	1.98
2701059--2701110	23	2.3	23	89	0	77	38	17	13	30	1.88
2701650--2701694	6	7.7	6	80	5	56	31	2	2	64	1.18
2701662--2701700	17	2.4	17	86	4	53	28	5	2	64	1.28
2702211--2702279	34	2.0	34	100	0	138	47	14	5	31	1.68
2703458--2703499	2	21.0	2	100	0	84	50	0	0	50	1.00
2705801--2705848	2	24.0	2	95	0	87	50	2	0	47	1.12
2706655--2706704	18	2.6	18	81	9	55	60	6	14	20	1.55
2707415--2707471	29	2.0	29	82	6	71	21	35	33	10	1.87
2708938--2709029	43	2.1	43	89	0	139	41	13	9	35	1.77
2709855--2709901	17	3.0	15	79	11	58	44	12	12	29	1.80
2709858--2709891	17	2.0	17	94	0	59	38	11	11	38	1.79
2710304--2710333	13	2.3	13	94	0	51	46	10	3	40	1.54
2710344--2710442	33	3.0	33	94	1	164	45	15	7	32	1.73
2710437--2710476	21	1.9	21	94	0	71	47	7	15	30	1.72
2712769--2712813	12	3.6	12	80	11	54	20	20	15	44	1.87
2712768--2712807	12	3.1	13	79	13	55	25	17	12	45	1.83
2715962--2717045	110	10.0	110	88	2	1484	34	22	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2717154--2717433	84	3.4	81	81	5	348	28	26	20	24	1.99
2718098--2718132	15	2.3	15	90	0	52	45	0	0	54	0.99
2725242--2725399	21	7.8	20	72	7	86	38	25	17	18	1.92
2725366--2725520	40	3.8	40	82	4	186	37	26	18	18	1.93
2725366--2725519	20	7.7	20	80	7	168	37	26	18	18	1.93
2725901--2725971	33	2.2	33	92	0	115	11	22	18	47	1.80
2726051--2726160	21	5.8	20	74	17	108	45	18	24	11	1.83
2726044--2726160	41	3.1	38	81	14	145	46	17	25	11	1.81
2726111--2726167	14	3.7	14	75	20	60	43	22	24	8	1.81
2726103--2726183	33	2.5	33	95	0	144	46	22	22	8	1.78
2726179--2726276	19	5.7	19	69	22	90	11	22	21	44	1.83
2726201--2726290	14	5.7	14	69	23	63	10	23	22	44	1.82
2726184--2726298	33	3.5	33	97	0	221	10	22	20	46	1.80
2727991--2728645	93	7.1	93	99	0	1294	21	12	19	46	1.83
2728693--2728821	19	7.3	19	75	17	125	45	28	17	8	1.77
2728729--2728821	33	2.8	32	91	4	150	46	27	18	7	1.76
2728693--2728821	52	2.5	52	74	14	140	45	28	17	8	1.77
2728817--2728950	19	7.6	19	73	18	119	11	19	23	45	1.82
2728839--2728895	14	3.7	14	77	20	60	10	21	22	45	1.82
2728822--2728950	33	3.8	33	87	5	168	10	18	24	46	1.81
2730873--2730908	14	2.6	14	95	0	63	33	0	22	44	1.53
2731015--2731112	19	5.4	19	84	13	143	45	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2731015--2731131	53	2.2	53	96	1	218	43	17	24	13	1.86
2731121--2731309	19	10.7	19	78	17	219	15	21	17	45	1.85
2731121--2731323	52	3.9	52	86	10	281	14	21	18	45	1.85
2731178--2731323	33	4.2	33	81	13	195	13	21	18	46	1.83
2733749--2733795	24	2.0	24	87	8	69	38	21	14	25	1.92
2734478--2734727	20	12.5	20	84	3	261	20	17	25	37	1.94
2734714--2734796	21	4.0	21	73	6	78	25	16	24	33	1.96
2734694--2734792	42	2.4	43	77	11	100	21	18	23	37	1.94
2736680--2736738	24	2.5	23	75	5	64	67	0	0	32	0.91
2737116--2737153	2	19.0	2	100	0	76	50	0	0	50	1.00
2739424--2739481	27	2.1	29	90	6	93	50	10	3	36	1.54
2739562--2739605	21	2.0	21	83	12	54	45	0	0	54	0.99
2740210--2740238	15	2.0	15	93	6	51	55	0	37	6	1.27
2740199--2740238	14	2.8	14	88	3	53	57	0	35	7	1.27
2742684--2742745	28	2.2	28	82	0	79	50	0	1	48	1.10
2742690--2742748	29	2.0	28	87	6	82	52	0	1	45	1.10
2742830--2742911	35	2.3	35	87	0	128	45	29	4	20	1.72
2742934--2742990	20	2.9	18	73	14	51	24	19	8	47	1.77
2742940--2742990	20	2.5	20	83	0	75	25	19	9	45	1.81
2744972--2745020	24	2.0	24	100	0	98	24	28	4	42	1.73
2744980--2745034	24	2.2	24	83	6	65	21	32	3	41	1.71
2745133--2745275	73	2.0	73	91	0	232	45	16	9	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2745555--2745594	19	2.1	19	85	0	53	62	0	5	32	1.17
2745673--2745720	17	2.8	17	78	9	53	56	4	8	31	1.48
2753157--2753221	28	2.3	27	86	2	85	35	12	16	35	1.87
2755955--2756044	6	14.7	6	71	13	58	72	0	2	25	0.96
2755955--2756047	21	4.7	20	72	22	65	72	0	2	25	0.96
2756172--2756214	20	2.3	19	84	11	54	74	6	2	16	1.14
2757838--2757927	37	2.5	36	85	7	121	27	10	22	40	1.86
2758037--2758141	37	2.9	36	91	2	174	40	14	21	22	1.90
2759291--2759351	32	1.9	32	82	0	77	40	21	11	26	1.87
2759303--2759371	33	2.1	33	89	2	104	36	18	13	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19