genome.fa.s8138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3838456

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  1  of  18  ( 2117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471--4557	29	3.0	29	93	1	147	43	9	13	33	1.76
19640--19705	3	22.0	3	100	0	132	66	0	0	33	0.92
26430--26485	24	2.3	24	81	3	67	17	44	10	26	1.82
29494--29545	24	2.1	25	85	3	70	13	5	1	78	1.01
29956--29981	6	4.3	6	100	0	52	50	0	0	50	1.00
30596--30628	17	1.9	17	93	0	57	6	12	9	72	1.26
31239--31283	19	2.4	19	96	3	83	11	11	8	68	1.39
34711--35456	164	4.5	162	79	4	713	30	25	19	24	1.98
34695--35494	84	9.7	83	77	5	695	30	25	19	24	1.98
34706--35491	248	3.2	248	91	0	1194	30	25	19	24	1.98
37864--37921	23	2.4	23	80	8	64	15	6	1	75	1.09
37988--38014	12	2.2	12	100	0	54	37	7	0	55	1.28
42602--42657	18	3.3	18	72	27	68	48	8	3	39	1.52
43085--43135	12	4.3	12	76	18	54	31	0	1	66	1.03
43093--43196	12	8.7	12	72	18	83	39	0	1	58	1.09
43120--43253	14	10.1	14	72	19	60	37	0	0	61	1.07
43220--43251	15	2.2	14	94	5	55	28	0	0	71	0.86
43221--43267	21	2.3	20	82	13	60	25	0	2	72	0.96
47389--47434	24	1.9	24	100	0	92	8	17	34	39	1.80
47388--47441	24	2.2	24	90	0	90	9	20	33	37	1.84
48520--48552	16	2.0	17	94	5	59	36	21	6	36	1.78
49868--49900	16	2.1	16	100	0	66	21	42	0	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56542--56611	34	2.1	34	97	0	131	50	14	12	22	1.77
63201--63249	22	2.1	22	85	7	62	51	0	0	48	1.00
66419--66503	44	2.0	43	86	4	118	20	27	17	35	1.95
66576--66660	44	1.9	44	95	0	152	17	27	17	37	1.92
66372--67251	160	5.5	160	92	1	1439	20	25	21	32	1.98
66736--66821	44	2.0	44	92	0	145	17	27	19	34	1.95
66909--66976	20	3.2	20	64	28	50	19	29	14	36	1.91
66895--66982	44	2.0	43	95	2	158	21	25	17	36	1.94
67057--67141	44	1.9	44	95	0	152	17	28	17	36	1.93
67314--67440	60	2.1	60	82	2	148	25	32	25	16	1.96
74428--74486	21	2.9	21	85	7	77	25	35	25	13	1.93
78406--78693	142	2.0	142	99	0	567	36	9	21	32	1.85
86558--86629	3	24.0	3	100	0	144	66	0	0	33	0.92
89074--89205	35	3.7	36	79	7	110	27	19	14	38	1.91
91052--91109	3	19.3	3	100	0	116	67	0	0	32	0.91
94371--94418	20	2.5	19	83	10	53	31	14	4	50	1.62
97376--97479	44	2.3	44	85	6	129	36	5	24	33	1.79
100465--100538	35	2.1	35	97	0	139	25	13	16	44	1.84
114585--114627	22	2.0	22	90	0	68	46	9	0	44	1.35
120331--120360	12	2.6	11	90	10	51	6	0	30	63	1.20
121049--121091	22	1.9	23	86	13	63	74	0	0	25	0.82
121141--121441	37	8.3	35	84	10	259	41	6	4	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121150--121441	73	4.0	72	86	6	369	42	7	4	45	1.52
121168--121441	35	7.6	36	88	5	383	43	6	4	45	1.49
124205--124444	106	2.2	107	96	1	437	47	8	11	32	1.70
125474--125501	14	2.0	14	100	0	56	7	35	0	57	1.26
132797--132862	32	2.1	32	100	0	132	24	24	28	22	1.99
136664--136925	35	7.5	35	83	10	306	41	7	3	47	1.49
138148--139503	684	2.0	675	95	4	2426	33	17	12	35	1.88
139687--139811	3	41.0	3	81	7	137	37	0	2	60	1.10
146204--146270	31	2.2	30	82	17	84	22	11	13	52	1.73
146940--147068	58	2.2	57	78	8	136	41	13	9	36	1.76
147721--147761	18	2.3	18	86	0	55	41	2	0	56	1.13
148411--148461	16	3.2	16	82	0	66	23	21	13	41	1.89
150271--150295	3	8.3	3	100	0	50	68	0	32	0	0.90
152186--152516	52	6.3	52	87	2	423	40	3	31	25	1.71
152186--152516	105	3.2	103	86	3	448	40	3	31	25	1.71
152189--152519	157	2.1	157	88	2	477	40	3	31	24	1.70
153255--153646	66	6.5	59	75	18	333	44	7	5	41	1.57
153357--153408	24	2.3	22	90	6	77	46	9	5	38	1.61
153324--153533	57	4.0	56	73	16	205	44	8	6	41	1.59
153291--153658	90	4.1	92	77	18	405	45	8	5	40	1.59
153467--153616	26	5.3	26	75	18	124	44	10	6	39	1.64
153277--153386	33	3.3	33	94	2	193	44	6	6	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153280--153635	182	1.9	185	93	4	610	44	8	6	41	1.59
153511--153590	24	3.3	23	80	16	81	46	11	6	36	1.65
153563--153664	33	3.0	33	84	8	127	45	8	4	41	1.57
153683--153834	2	76.0	2	68	17	84	45	4	3	46	1.40
153690--153733	23	1.9	23	95	0	79	38	2	6	52	1.41
153836--153965	65	2.0	63	91	2	206	25	10	6	58	1.53
155145--155234	31	2.8	32	79	11	96	44	2	3	50	1.31
157071--157176	54	2.0	54	88	0	158	20	22	25	31	1.98
158320--158409	10	9.1	9	80	10	81	41	2	5	51	1.38
158320--158395	2	39.5	2	74	12	70	42	0	5	52	1.24
161507--161819	137	2.3	137	80	6	335	44	14	12	29	1.80
164126--164237	44	2.5	45	79	15	124	5	17	0	75	1.03
164551--164661	44	2.5	44	80	0	114	27	18	18	34	1.95
164454--164836	131	2.9	132	84	4	456	33	17	17	31	1.94
164787--164888	44	2.3	44	81	9	127	34	16	20	28	1.95
164420--164886	131	3.5	131	78	5	433	33	17	17	31	1.94
168964--168997	17	2.0	17	88	0	50	67	2	26	2	1.19
171717--171754	11	3.6	11	86	10	53	10	10	0	78	0.95
173406--173466	18	3.3	18	84	8	70	63	0	13	22	1.28
176489--176532	18	2.4	19	76	7	54	50	9	2	38	1.47
178247--178284	20	1.9	20	100	0	76	47	15	5	31	1.68
178194--178362	78	2.2	78	97	0	320	44	15	4	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178325--178376	20	2.6	20	93	0	95	50	15	3	30	1.62
183782--183840	29	2.0	29	96	0	109	23	11	13	50	1.74
190134--190280	41	3.6	40	72	17	133	29	20	18	31	1.96
190258--190390	40	3.3	40	65	17	94	30	16	18	35	1.93
190132--190481	81	4.3	81	86	3	409	30	18	17	33	1.94
191113--191151	20	2.0	20	89	0	60	33	15	20	30	1.94
192714--192770	20	3.1	19	72	27	59	26	29	19	24	1.98
192714--192764	16	2.9	17	78	21	52	27	27	19	25	1.99
192880--192920	21	2.0	21	90	0	64	29	21	26	21	1.99
193209--193275	34	2.0	34	87	0	98	32	16	25	25	1.96
195523--195573	20	2.8	19	75	24	56	27	23	21	27	1.99
195689--195728	21	1.9	21	94	0	71	30	17	27	25	1.97
196589--196640	12	4.1	12	74	13	50	15	7	7	69	1.35
199689--199726	16	2.2	18	86	13	53	60	0	13	26	1.33
203180--203204	13	1.9	13	100	0	50	56	16	16	12	1.68
212606--212705	33	3.0	33	70	8	78	33	34	10	23	1.88
221812--221893	23	3.6	22	78	8	94	23	24	28	24	2.00
221820--221912	44	2.1	44	84	7	118	24	21	26	26	1.99
225717--225756	21	1.9	21	85	10	55	35	10	2	52	1.48
236137--236191	26	2.1	27	82	3	67	70	1	7	20	1.20
236162--236214	26	2.0	26	85	0	70	62	7	5	24	1.44
236296--236322	13	2.1	13	100	0	54	44	22	0	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236326--236359	16	2.2	15	94	5	59	38	11	5	44	1.65
236264--236443	76	2.4	75	82	10	215	43	10	5	41	1.60
236283--236445	38	4.3	38	79	14	169	42	10	4	41	1.60
236403--236431	14	2.1	14	100	0	58	44	6	6	41	1.58
236464--236523	2	30.0	2	93	6	104	48	1	0	50	1.11
244507--244624	40	3.0	40	94	0	209	24	16	17	40	1.90
247740--247945	45	4.5	45	83	7	261	23	23	9	43	1.83
247752--247945	94	2.1	90	86	3	271	24	24	9	42	1.83
248324--248523	95	2.1	95	81	3	224	27	23	11	37	1.89
248513--248557	17	2.6	17	96	0	81	31	31	11	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18