genome.fa.s8138.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3838456

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259421--259485	2	32.5	2	100	0	130	50	0	0	49	1.00
261759--261791	17	1.9	17	88	11	50	72	3	12	12	1.23
263602--263668	23	2.7	25	81	11	93	40	5	2	50	1.42
263581--263638	32	1.9	30	86	10	82	44	5	3	46	1.42
263678--263716	2	19.0	2	85	15	53	46	5	0	48	1.24
264618--264665	16	2.9	17	75	6	55	47	0	0	52	1.00
264591--264767	84	2.1	84	92	5	297	41	1	5	51	1.34
264708--264749	13	2.9	15	79	17	52	45	0	0	54	0.99
273655--273695	14	2.9	14	77	0	55	43	19	21	14	1.87
275944--275979	11	3.5	11	88	11	58	77	0	5	16	0.94
275983--276022	3	13.3	3	100	0	80	67	0	0	32	0.91
280328--280370	3	14.3	3	100	0	86	67	0	0	32	0.91
288176--288229	21	2.6	21	78	0	63	33	14	14	37	1.88
294098--294164	23	2.9	23	75	6	73	32	17	13	35	1.89
294033--294311	121	2.3	121	81	2	310	38	13	13	34	1.84
294206--294258	23	2.3	23	83	0	61	35	13	16	33	1.88
294830--295044	111	2.0	109	85	5	290	33	13	11	41	1.81
295312--295642	116	2.8	117	87	6	450	47	10	12	28	1.75
296167--296331	60	2.8	59	85	1	206	42	6	18	32	1.76
296225--296313	29	3.0	29	69	18	83	44	4	16	33	1.68
301108--301147	20	2.0	21	90	5	64	27	20	20	32	1.97
303481--303523	3	14.7	3	81	13	54	32	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305071--305206	62	2.2	61	80	11	152	20	8	10	60	1.56
305149--305194	24	1.9	24	86	8	67	15	6	13	65	1.46
305087--305231	62	2.3	62	79	9	145	22	7	9	60	1.53
305668--306016	131	2.7	131	89	1	511	33	10	16	38	1.84
307209--307259	21	2.4	21	100	0	102	27	29	21	21	1.99
318460--318753	54	5.4	54	88	1	421	28	18	20	32	1.96
321863--321935	14	5.1	15	72	11	57	78	0	12	9	0.98
321905--321938	14	2.5	13	90	9	59	82	0	17	0	0.67
325349--325402	21	2.5	20	76	5	54	37	22	11	29	1.89
328495--328620	53	2.4	53	97	1	236	28	17	23	30	1.97
330178--330522	133	2.6	131	82	4	413	31	22	17	28	1.96
333767--333860	24	4.0	24	83	2	109	25	15	20	38	1.92
333767--333857	47	1.9	48	84	2	121	26	16	19	37	1.93
333935--334009	35	2.1	35	87	4	107	12	26	25	36	1.91
338454--338544	24	3.8	24	77	2	103	26	16	17	39	1.91
338623--338696	35	2.1	35	87	0	103	13	25	28	32	1.94
339859--339913	25	2.2	25	93	0	92	21	40	20	18	1.92
341816--341894	23	3.4	23	91	0	86	31	24	21	22	1.98
342456--342611	64	2.4	65	82	3	172	30	21	18	29	1.97
343545--343570	13	2.0	13	100	0	52	38	7	38	15	1.76
344431--344470	21	1.9	21	89	0	62	55	7	7	30	1.56
348322--348380	21	2.7	23	81	5	68	28	18	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348310--348381	23	3.2	23	73	15	78	26	20	23	29	1.99
348374--348420	20	2.3	20	96	0	85	19	21	21	38	1.94
358506--358849	132	2.6	131	91	2	546	32	11	17	38	1.85
363411--363476	27	2.4	27	97	0	123	34	24	16	24	1.95
364967--365007	19	2.2	19	86	8	57	51	34	0	14	1.43
365857--366150	146	2.0	147	97	0	563	30	5	9	54	1.56
372672--372822	77	2.0	76	88	2	223	35	12	10	41	1.78
374068--374293	36	6.3	36	93	1	339	17	26	24	31	1.97
374068--374293	108	2.1	108	91	1	373	17	26	24	31	1.97
378664--378776	60	1.9	57	85	8	156	35	15	15	33	1.89
378670--378796	57	2.2	59	81	8	143	36	16	14	33	1.89
379645--379681	2	18.5	2	100	0	74	48	0	0	51	1.00
390951--391619	277	2.4	281	84	6	822	46	6	13	33	1.68
394889--394919	2	16.0	2	93	6	55	51	0	0	48	1.00
396982--397183	65	3.1	63	81	12	214	31	23	18	26	1.97
397155--397203	19	2.6	19	84	9	57	24	28	20	26	1.99
401275--401319	23	2.0	23	81	0	54	26	31	24	17	1.97
401298--401741	145	3.0	147	96	2	808	34	20	17	27	1.95
401326--401741	148	2.8	143	96	2	502	35	20	16	27	1.94
402587--402621	18	1.9	18	88	11	54	22	17	5	54	1.64
403200--403244	21	2.1	21	87	0	63	15	24	28	31	1.96
404831--404887	23	2.4	23	82	8	71	24	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405259--405292	17	1.9	18	88	5	52	61	11	0	26	1.30
407484--407694	65	3.3	61	79	14	219	31	23	18	27	1.97
407666--407714	19	2.6	19	84	9	57	24	28	20	26	1.99
414601--414756	77	2.0	77	92	0	258	36	11	12	39	1.79
417353--417439	43	2.0	44	95	2	158	43	5	6	43	1.55
422162--422274	60	1.9	57	85	8	156	35	15	15	33	1.89
422168--422294	57	2.2	59	81	8	143	36	16	14	33	1.89
423136--423176	2	20.5	2	100	0	82	48	0	0	51	1.00
429694--430160	259	1.8	258	86	3	688	43	5	16	33	1.72
429952--430958	284	3.5	283	86	5	1269	47	6	14	32	1.70
430667--430691	12	2.1	12	100	0	50	44	0	24	32	1.54
431117--431351	4	57.8	4	71	19	87	47	15	2	34	1.61
431138--431300	44	3.9	44	73	16	150	46	15	3	34	1.61
431132--431208	2	38.0	2	70	12	50	48	11	1	38	1.48
431152--431346	66	2.9	65	73	17	159	47	16	3	32	1.63
439676--439723	2	24.0	2	100	0	96	50	0	0	50	1.00
440228--440272	20	2.2	20	88	4	63	17	15	17	48	1.81
443127--443239	54	2.1	54	95	3	201	31	29	15	23	1.95
445320--445364	20	2.2	20	92	4	72	15	17	17	48	1.81
445761--445799	2	19.5	2	100	0	78	51	0	0	48	1.00
446537--446570	17	2.0	17	100	0	68	23	35	5	35	1.79
453131--453163	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463377--463465	45	1.9	47	90	4	146	29	11	22	37	1.89
473085--473122	18	2.2	18	85	4	51	76	5	13	5	1.13
473145--473178	7	4.7	7	85	7	50	76	0	14	8	1.01
473144--473184	15	2.7	15	88	0	64	78	0	14	7	0.96
473159--473192	17	1.9	17	88	5	50	76	0	14	8	1.01
474508--474987	51	9.2	51	87	4	527	27	15	27	28	1.96
474938--475072	53	2.5	53	83	7	157	29	17	23	29	1.97
488355--488387	13	2.5	14	85	14	52	27	12	18	42	1.85
488701--488763	32	2.0	32	87	6	92	33	23	9	33	1.87
493260--493373	57	2.0	57	84	3	149	21	25	16	35	1.94
496974--497016	20	2.1	21	86	4	61	46	2	0	51	1.13
498344--498409	23	2.8	23	79	2	69	28	7	0	63	1.21
498851--498875	12	2.1	12	100	0	50	32	8	0	60	1.26
501413--501472	31	1.9	31	100	0	120	36	6	6	50	1.55
503666--503928	95	2.7	95	88	4	350	32	16	17	33	1.93
505006--506218	84	14.5	84	84	1	1452	33	24	18	23	1.97
505006--506215	417	2.9	417	87	2	1696	33	24	18	23	1.97
506703--506744	22	2.0	21	85	4	57	45	2	0	52	1.13
507808--507838	13	2.3	14	94	5	55	19	6	0	74	1.03
507874--507945	23	3.0	24	78	15	78	20	4	2	72	1.15
507973--508019	17	2.8	17	78	12	60	34	2	6	57	1.36
508066--508105	2	19.5	2	94	5	71	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508412--508493	9	9.0	9	71	12	51	15	4	3	75	1.11
509555--509587	11	3.0	11	87	12	50	0	45	0	54	0.99
509564--509596	16	2.1	16	94	0	57	0	48	0	51	1.00
512940--512995	28	2.1	26	83	6	67	66	0	3	30	1.09
513761--513820	20	2.9	21	80	5	59	56	1	1	40	1.19
513877--513928	26	2.0	25	85	10	70	51	0	0	48	1.00
513953--513997	23	2.0	23	86	0	63	53	2	2	42	1.25
514034--514098	31	2.0	33	82	11	82	49	4	0	46	1.22
514032--514106	32	2.2	34	79	13	84	49	4	0	46	1.20
514110--514190	26	3.6	21	69	16	56	45	1	2	50	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18