genome.fa.s8138.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3838456

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718443--3718523	38	2.2	37	91	4	128	43	0	8	48	1.34
3718521--3718555	10	3.6	10	88	3	54	28	2	0	68	1.04
3718526--3718572	23	2.0	23	84	8	60	23	2	2	72	1.06
3719794--3719836	16	2.6	17	82	13	54	20	9	0	69	1.15
3719848--3719941	30	2.9	30	72	13	73	19	6	3	71	1.22
3719848--3719911	17	3.9	16	77	16	69	18	1	3	76	1.00
3722206--3722254	24	2.0	24	84	7	64	26	2	12	59	1.44
3732446--3732494	23	2.1	23	85	7	64	26	2	12	59	1.44
3737678--3737841	85	1.9	85	84	1	220	35	21	18	24	1.96
3738157--3738189	16	2.0	17	94	5	59	6	18	24	51	1.68
3738338--3738486	73	2.0	75	96	3	275	33	5	26	34	1.79
3738772--3738816	19	2.5	19	92	7	76	28	22	28	20	1.98
3739387--3739421	18	1.9	18	100	0	70	17	22	34	25	1.96
3740682--3740731	21	2.4	21	100	0	100	40	10	24	26	1.86
3745653--3745710	20	2.6	22	79	20	68	29	20	27	22	1.99
3746238--3746304	18	3.7	18	91	0	107	16	20	31	31	1.95
3747675--3747832	36	4.4	34	78	15	110	45	3	8	43	1.49
3747799--3747861	26	2.5	26	92	2	110	46	3	6	44	1.45
3747823--3748405	37	15.6	37	84	8	636	44	3	7	45	1.48
3747823--3748404	75	7.7	75	79	15	506	44	3	7	45	1.48
3747876--3747926	25	2.0	27	92	7	88	41	3	9	45	1.56
3748403--3748448	3	15.3	3	90	0	74	32	4	0	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3749572--3749600	3	10.0	3	92	7	51	31	0	0	68	0.89
3749616--3749690	7	10.1	7	72	16	53	18	5	1	74	1.08
3749609--3749711	30	3.3	31	73	14	97	20	7	1	69	1.23
3749636--3749690	25	2.3	24	82	14	62	21	3	0	74	0.97
3751614--3751695	41	2.0	41	90	0	128	34	12	15	37	1.85
3756375--3756416	20	2.1	20	86	0	57	69	9	11	9	1.38
3757168--3757244	23	3.5	22	73	15	61	31	2	28	37	1.71
3757781--3757820	16	2.4	17	91	4	64	0	7	2	90	0.55
3761275--3761345	30	2.4	29	81	9	74	33	5	2	57	1.37
3769240--3769324	3	28.3	3	97	0	161	34	1	0	64	1.01
3769323--3769357	14	2.4	15	85	4	54	60	2	0	37	1.12
3771519--3771556	15	2.8	13	88	11	51	23	5	2	68	1.23
3778592--3778630	20	1.9	20	89	5	60	23	10	0	66	1.22
3782458--3782512	20	2.7	20	86	11	67	27	9	7	56	1.57
3783275--3783659	83	4.6	83	89	2	594	25	14	22	37	1.92
3783270--3783659	166	2.3	166	96	0	726	25	14	22	36	1.93
3784291--3784670	107	3.5	109	86	8	503	36	12	20	30	1.90
3784423--3784915	250	2.0	246	91	7	811	36	12	20	29	1.90
3784670--3785138	111	4.2	113	86	8	608	37	13	20	28	1.91
3784670--3785138	225	2.1	218	83	8	599	37	13	20	28	1.91
3785270--3785335	3	23.0	3	87	9	102	33	1	0	65	1.02
3785270--3785345	34	2.3	34	88	6	111	35	1	0	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3785270--3785335	19	3.3	21	87	10	84	33	1	0	65	1.02
3785270--3785345	22	3.7	21	83	8	95	35	1	0	63	1.03
3789339--3789414	36	2.1	36	97	0	143	31	10	14	43	1.79
3794283--3794344	32	1.9	32	96	0	115	35	11	16	37	1.84
3794702--3794743	22	2.0	22	90	4	68	61	11	0	26	1.30
3794826--3794992	29	5.6	31	75	11	143	56	11	14	17	1.67
3794824--3794992	30	5.7	30	75	7	148	56	11	14	17	1.66
3794831--3795018	59	3.2	59	73	6	150	57	10	14	18	1.64
3794831--3795018	30	6.3	29	72	14	82	57	10	14	18	1.64
3796490--3796531	18	2.6	16	80	20	52	66	0	0	33	0.92
3797024--3797184	66	2.5	66	86	9	224	42	11	15	30	1.83
3797419--3797588	28	5.6	28	70	17	108	42	14	13	29	1.84
3797417--3797609	65	3.1	63	72	20	163	43	13	13	29	1.84
3798234--3798264	16	1.9	16	93	0	53	16	0	32	51	1.44
3805300--3805340	22	1.9	22	90	5	66	63	9	0	26	1.25
3805419--3805646	29	7.8	28	77	14	178	55	12	14	17	1.68
3805428--3805646	30	7.5	28	79	11	210	56	11	14	17	1.67
3805421--3805672	30	8.6	29	79	9	208	55	12	13	17	1.68
3805428--3805672	59	4.2	59	77	11	225	56	11	14	17	1.67
3806673--3806796	32	3.9	32	93	0	194	33	22	19	25	1.97
3810522--3810562	21	2.0	21	95	0	73	36	14	9	39	1.79
3813555--3813627	36	2.0	36	91	0	119	32	5	30	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3823158--3823408	123	2.0	123	98	0	484	25	25	17	31	1.97
3823548--3823684	60	2.3	60	82	2	150	32	17	15	34	1.91
3824353--3824408	2	28.5	2	96	3	105	50	0	0	50	1.00
3830178--3830212	9	3.9	9	96	0	61	80	0	17	2	0.84
3832487--3832566	10	8.3	9	78	12	79	15	30	28	26	1.96
3832486--3832564	19	4.1	19	81	15	90	16	27	29	26	1.97
3832471--3832566	29	3.3	29	84	10	115	15	28	27	29	1.96
3832563--3832619	5	10.8	5	81	10	69	19	52	22	5	1.66
3832563--3832626	21	3.0	22	95	4	121	18	50	23	7	1.73
3832616--3832647	7	4.4	7	92	7	55	18	28	28	25	1.98
3832616--3832647	15	2.2	14	94	5	55	18	28	28	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!