genome.fa.s8138.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3838456

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637657--637698	22	1.9	22	85	9	59	35	0	33	30	1.58
638019--638089	31	2.3	31	82	4	81	30	2	18	47	1.63
638044--638087	13	3.5	13	84	3	63	31	0	15	52	1.44
641517--641573	23	2.5	23	88	0	87	45	7	12	35	1.69
641489--641651	87	1.9	87	92	0	272	42	9	13	34	1.77
641657--642169	199	2.6	197	83	6	642	29	15	15	40	1.87
642419--643012	182	3.3	181	89	3	865	27	16	12	43	1.85
643914--643975	29	2.1	29	90	0	97	27	3	3	66	1.23
644062--644126	30	2.2	30	78	5	71	50	4	0	44	1.22
644161--644204	23	1.9	23	85	0	61	34	6	4	54	1.47
644188--644220	16	1.9	18	88	11	52	42	0	9	48	1.35
644221--644317	29	3.3	29	84	4	106	53	0	6	40	1.26
646993--647025	2	16.5	2	100	0	66	48	0	0	51	1.00
647543--647584	2	21.0	2	95	0	75	0	52	0	47	1.00
651397--651854	119	3.8	117	80	6	440	25	21	14	39	1.91
652963--653020	11	5.4	11	70	25	52	5	15	0	79	0.90
652956--653020	19	3.2	19	74	23	53	4	15	0	80	0.88
652956--652988	11	3.0	11	83	16	50	0	12	0	87	0.53
655577--655618	21	2.0	21	81	9	50	7	42	2	47	1.43
656537--656577	3	14.7	3	85	14	61	65	0	0	34	0.93
666737--667391	140	4.8	138	79	7	651	44	12	12	30	1.79
667004--667389	127	2.9	128	84	6	488	44	12	12	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666862--667389	267	2.0	266	85	4	706	44	13	11	30	1.79
667618--667642	7	3.6	7	100	0	50	48	28	12	12	1.76
667809--668106	137	2.2	137	92	0	490	37	13	17	31	1.88
669356--669391	18	1.9	19	94	5	65	41	25	22	11	1.86
670144--670339	74	2.6	73	82	6	198	43	5	1	49	1.32
670728--670776	22	2.1	24	85	7	66	53	0	0	46	1.00
670746--670794	19	2.4	21	83	12	59	46	0	2	51	1.12
670749--670794	20	2.3	21	81	11	60	47	0	2	50	1.13
671270--671482	5	42.8	5	98	0	392	38	0	0	61	0.96
673187--673242	29	1.9	29	85	0	76	33	16	3	46	1.64
673895--673938	22	1.9	24	86	9	65	22	2	6	68	1.25
673894--673932	17	2.3	18	86	8	55	20	2	7	69	1.26
675241--675395	65	2.4	63	81	10	165	30	20	16	33	1.94
680788--680858	23	3.2	23	69	15	76	28	22	19	29	1.98
680762--680866	44	2.4	44	95	0	183	30	20	19	29	1.97
686860--686947	12	7.2	12	73	19	76	79	1	17	2	0.90
686860--686944	13	6.7	13	71	15	70	78	1	17	2	0.91
686860--686952	26	3.8	24	80	13	93	79	1	16	3	0.92
686838--686952	12	9.1	12	70	18	74	76	0	18	4	1.00
686870--686961	21	4.1	22	75	16	82	79	2	14	4	0.98
686870--686952	23	3.7	23	75	13	84	79	1	15	3	0.93
686861--686963	47	2.2	45	78	13	102	79	1	14	3	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687705--687763	28	2.1	28	83	0	73	38	28	6	25	1.81
690477--690512	18	2.0	18	88	0	54	52	0	16	30	1.44
691646--691722	24	3.2	24	76	9	75	19	9	15	55	1.66
695499--695556	18	3.2	17	75	4	53	51	1	20	25	1.57
695995--696077	24	3.5	24	79	0	85	20	13	18	48	1.81
696018--696077	12	5.0	12	74	8	59	18	13	18	50	1.78
700414--700471	18	3.2	17	75	4	53	51	1	20	25	1.57
702746--703377	55	11.6	55	81	7	619	33	11	14	41	1.81
702788--703293	221	2.3	219	84	3	685	34	10	13	40	1.80
703194--703377	100	1.8	100	89	2	289	30	10	15	43	1.81
703385--703542	56	2.8	56	84	0	199	31	10	16	41	1.82
703715--703843	61	2.1	60	87	4	179	34	10	13	41	1.77
704840--705228	139	2.8	139	90	0	607	35	18	20	25	1.95
708721--708777	18	2.9	19	87	12	89	28	12	12	47	1.77
709076--709150	21	3.7	20	77	12	71	29	22	17	30	1.97
709095--709185	20	4.3	21	72	19	73	31	19	21	26	1.98
709223--709259	19	1.9	19	88	0	56	40	18	21	18	1.91
711051--711082	11	2.8	12	90	9	50	21	0	0	78	0.76
720458--720506	13	3.5	13	88	8	62	59	2	0	38	1.09
721338--721376	20	2.0	20	84	0	51	51	0	2	46	1.14
726615--726677	31	2.0	32	96	3	119	38	6	0	55	1.25
730377--730431	4	13.8	4	88	0	74	23	7	25	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730429--730816	2	197.5	2	88	3	583	3	0	45	50	1.21
732605--732662	31	1.9	30	86	10	82	53	10	18	17	1.71
735661--735695	2	17.5	2	100	0	70	48	0	0	51	1.00
737083--737233	42	3.5	42	80	14	166	26	16	6	50	1.70
737083--737319	44	5.6	42	75	13	157	27	16	5	49	1.69
737083--737248	44	3.8	44	79	10	182	26	16	6	51	1.67
748969--749008	20	2.0	20	85	9	55	47	0	5	47	1.24
751394--751503	27	4.0	27	80	12	109	33	12	1	51	1.50
751962--751991	2	15.0	2	100	0	60	50	0	0	50	1.00
755049--755092	21	2.1	21	86	0	61	56	25	13	4	1.56
756778--757107	132	2.5	131	86	4	447	32	10	18	39	1.84
759367--759401	11	3.2	11	87	0	52	20	20	8	51	1.73
764817--764884	6	11.7	6	83	13	81	85	0	13	1	0.67
764820--764884	14	4.9	13	85	14	89	84	0	13	1	0.69
764814--764898	19	4.8	17	82	15	93	82	0	14	3	0.80
766074--766259	46	4.2	47	66	18	119	27	23	18	29	1.98
766002--766363	131	2.7	134	85	4	475	30	23	15	30	1.96
766776--766835	21	2.9	21	80	5	68	55	28	10	6	1.58
768573--768914	133	2.6	132	86	2	454	31	11	17	40	1.84
772440--772475	17	2.1	17	100	0	72	27	5	11	55	1.57
774526--774580	20	2.8	20	80	8	67	20	3	5	70	1.22
777230--777265	15	2.4	15	85	0	54	33	13	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793705--793748	18	2.4	18	96	0	79	61	2	6	29	1.34
798175--798319	55	2.6	56	84	3	186	27	20	20	31	1.97
804444--804518	21	3.6	21	96	3	134	28	28	17	26	1.98
805129--805274	55	2.7	55	88	2	213	28	21	19	30	1.98
808435--808469	13	2.7	13	90	0	52	48	20	2	28	1.63
829531--829680	55	2.8	53	73	10	135	34	10	13	42	1.78
830113--830277	60	2.8	60	86	0	240	32	27	13	26	1.94
832035--832065	11	2.9	11	95	4	55	25	0	0	74	0.82
832125--832179	23	2.5	22	83	13	69	16	0	7	76	1.00
833441--833562	55	2.2	56	83	2	147	23	14	18	42	1.88
833570--833647	31	2.5	32	81	6	88	29	10	15	44	1.79
836878--836938	30	2.0	30	84	6	79	60	8	4	26	1.45
838651--838698	24	2.0	25	87	4	71	29	10	20	39	1.86
843608--843734	60	2.1	60	80	2	139	35	16	6	41	1.74
845075--845141	23	2.9	23	86	0	98	34	25	25	14	1.94
845081--845155	23	3.4	22	85	3	89	36	26	24	13	1.92
845511--845571	19	3.3	19	67	17	56	26	24	11	37	1.89
845500--845580	36	2.2	36	97	0	153	27	24	8	39	1.84
852782--852842	23	2.8	21	71	9	59	29	19	18	32	1.95
852738--852857	44	2.8	44	82	6	154	30	21	19	29	1.97
853226--853267	19	2.2	20	82	4	50	59	7	2	30	1.37
856876--856939	24	2.6	25	80	5	76	35	23	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858185--858239	29	2.0	27	82	7	65	58	0	0	41	0.98
858360--858403	18	2.5	18	85	10	56	47	0	9	43	1.35
858658--858708	26	2.0	26	84	7	68	50	3	9	35	1.54
859365--859409	20	2.4	19	85	10	65	20	24	8	46	1.78
859372--859409	20	1.9	20	94	0	67	21	23	10	44	1.83
860389--860487	24	4.2	24	78	7	76	45	17	13	24	1.83
860434--860490	24	2.4	24	87	0	87	43	19	12	24	1.85
861061--861721	332	2.0	332	92	0	1108	30	18	14	36	1.91
861810--861868	26	2.3	26	90	0	100	28	16	16	37	1.92
867110--867142	15	2.1	16	94	5	59	39	9	18	33	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18