genome.fa.s8138.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3838456

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2190783--2190834	22	2.4	22	93	0	86	32	25	26	15	1.95
2193825--2193945	9	14.2	8	70	20	70	76	0	19	3	0.98
2193832--2193938	21	5.6	18	76	15	74	75	0	20	3	0.95
2193837--2193927	11	8.3	11	70	19	57	75	0	20	3	0.94
2193851--2193931	20	4.0	21	75	16	64	75	0	22	2	0.92
2193825--2193942	49	2.3	49	85	9	150	75	0	20	3	1.00
2196093--2196211	42	2.9	40	77	7	114	28	20	20	31	1.97
2196357--2196456	42	2.4	42	83	1	130	26	24	21	29	1.99
2196033--2196915	260	3.5	259	78	8	936	33	16	15	34	1.90
2197045--2197087	15	2.9	15	83	10	52	37	0	0	62	0.95
2199902--2199953	22	2.4	22	93	0	86	32	25	26	15	1.95
2202941--2203061	9	14.2	8	70	20	70	76	0	19	3	0.98
2202948--2203054	21	5.6	18	76	15	74	75	0	20	3	0.95
2202953--2203043	11	8.3	11	70	19	57	75	0	20	3	0.94
2202967--2203047	20	4.0	21	75	16	64	75	0	22	2	0.92
2202941--2203058	49	2.3	49	85	9	150	75	0	20	3	1.00
2205200--2205318	42	2.9	40	77	7	114	28	20	20	31	1.97
2205464--2205563	42	2.4	42	83	1	130	26	24	21	29	1.99
2205140--2206022	260	3.5	259	79	8	954	33	16	15	34	1.90
2205464--2205935	239	2.0	237	83	4	601	32	16	16	33	1.92
2206156--2206196	16	2.6	16	88	3	57	39	0	0	60	0.96
2207383--2207408	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2216130--2216212	37	2.2	39	85	6	109	34	8	1	55	1.38
2216853--2216931	34	2.3	34	93	0	131	35	35	18	10	1.85
2217599--2217693	20	4.7	20	68	12	59	40	10	20	29	1.85
2217875--2218243	199	1.9	199	90	1	587	38	14	13	32	1.86
2217875--2218289	199	2.1	199	85	3	550	39	14	13	32	1.86
2218492--2218885	118	3.5	113	69	15	319	32	15	13	38	1.86
2218469--2219064	222	2.7	223	88	3	874	32	14	14	38	1.86
2221367--2221578	113	1.9	113	88	3	320	27	21	9	40	1.85
2231132--2231178	5	9.2	5	86	4	58	42	0	2	55	1.12
2232210--2232387	90	2.0	90	90	0	284	36	10	8	44	1.70
2234015--2234057	19	2.3	18	88	11	61	69	0	20	9	1.15
2234196--2234233	20	2.0	19	85	10	51	55	15	0	28	1.41
2234266--2234378	3	37.3	3	90	1	145	30	4	1	62	1.25
2239113--2239155	11	3.8	11	81	6	50	23	4	20	51	1.66
2254812--2254878	20	3.3	20	100	0	134	35	16	23	23	1.95
2254973--2255042	6	12.5	6	98	1	105	28	54	17	0	1.43
2255706--2255762	6	9.5	6	96	0	105	0	15	49	35	1.45
2255818--2255864	20	2.3	20	96	0	85	25	21	17	36	1.94
2258674--2258707	15	2.2	16	89	5	52	35	8	5	50	1.58
2258976--2259054	36	2.4	30	74	21	86	32	10	36	20	1.86
2258987--2259063	36	2.1	36	85	0	100	32	10	38	18	1.84
2258979--2259048	36	1.9	36	94	0	122	32	11	35	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2259078--2259114	12	3.0	12	92	4	56	16	51	21	10	1.74
2259133--2259187	2	28.5	2	89	7	87	47	0	0	52	1.00
2265075--2265110	18	2.0	18	89	10	56	58	0	0	41	0.98
2265307--2265397	36	2.5	36	94	1	164	15	19	16	48	1.81
2269891--2269933	21	2.0	21	95	0	77	23	27	20	27	1.99
2270578--2270720	31	4.6	31	94	0	250	38	21	19	20	1.94
2275201--2275370	31	5.5	31	93	0	277	38	21	18	21	1.94
2276307--2276357	20	2.5	20	93	0	93	25	33	17	23	1.96
2279870--2280012	31	4.6	31	92	0	232	39	21	18	20	1.92
2283792--2283834	21	2.0	21	100	0	86	23	27	23	25	2.00
2284471--2284582	31	3.6	31	93	0	188	39	23	17	19	1.92
2285512--2285573	20	3.1	20	97	0	115	22	37	14	25	1.92
2291311--2291337	13	2.1	13	100	0	54	14	40	0	44	1.46
2291024--2291683	359	1.8	359	95	0	1196	30	22	13	33	1.92
2293444--2293481	18	2.1	18	85	9	51	57	2	5	34	1.35
2294435--2294475	3	14.0	3	94	5	75	65	0	0	34	0.93
2294418--2294475	26	2.2	27	90	3	91	62	0	1	36	1.06
2294418--2294477	20	3.0	20	85	9	77	61	0	1	36	1.06
2295876--2295901	13	2.0	13	100	0	52	15	23	23	38	1.92
2297773--2297822	16	3.0	16	88	5	73	40	2	30	28	1.68
2298407--2298475	33	2.1	33	94	0	120	43	36	7	13	1.71
2298406--2298495	28	3.0	28	80	13	99	47	30	6	15	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2298440--2298506	28	2.4	28	90	2	100	44	28	8	17	1.79
2308249--2308305	2	28.5	2	100	0	114	50	0	0	49	1.00
2309751--2310076	136	2.4	136	90	1	492	23	22	17	36	1.95
2311031--2311092	12	5.1	12	85	12	74	0	16	0	83	0.64
2311031--2311092	19	3.4	18	84	8	81	0	16	0	83	0.64
2311031--2311095	11	5.9	11	81	18	73	0	16	0	83	0.66
2314820--2314850	15	2.1	15	93	0	53	67	3	22	6	1.28
2322189--2322239	20	2.5	20	96	0	93	23	23	35	17	1.95
2322347--2322400	24	2.2	24	93	0	90	29	12	25	31	1.93
2331067--2331121	18	3.0	18	86	2	74	20	12	36	30	1.90
2331144--2331195	20	2.6	20	100	0	104	26	15	26	30	1.96
2331353--2331388	18	2.0	18	100	0	72	50	5	11	33	1.61
2342080--2342197	46	2.6	46	86	5	168	24	18	11	45	1.82
2342508--2343065	57	9.8	57	90	1	872	36	18	9	35	1.84
2342508--2343065	113	4.9	114	92	1	906	36	18	9	35	1.84
2342508--2343065	170	3.3	169	91	1	891	36	18	9	35	1.84
2346082--2346289	77	2.7	76	85	2	267	25	31	22	20	1.98
2352066--2352136	21	3.2	21	74	16	63	22	40	22	14	1.89
2354722--2354922	76	2.6	77	88	2	271	23	32	23	20	1.98
2357349--2357420	22	3.2	22	71	11	65	23	20	13	41	1.88
2357289--2357422	46	2.9	46	85	3	164	24	19	12	43	1.86
2357722--2358310	57	9.8	59	79	12	568	34	17	10	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2357722--2357859	61	2.4	57	88	4	195	34	18	9	38	1.83
2357834--2357885	26	2.0	26	96	0	95	34	21	15	28	1.94
2357860--2358310	113	4.0	114	93	0	780	34	17	11	36	1.86
2357860--2358310	170	2.6	170	97	0	839	34	17	11	36	1.86
2359055--2359079	10	2.5	10	100	0	50	92	0	8	0	0.40
2360145--2360245	6	16.8	6	97	0	193	17	15	32	33	1.92
2362176--2362493	85	3.7	85	79	3	309	25	20	21	32	1.98
2362163--2362520	170	2.1	170	77	5	364	25	20	22	31	1.98
2363590--2363632	21	2.0	21	95	0	77	16	9	30	44	1.79
2364000--2364091	40	2.2	42	75	11	100	56	1	1	41	1.13
2364002--2364392	186	2.1	185	93	0	667	43	3	8	45	1.50
2365111--2365135	7	3.6	7	100	0	50	24	0	0	76	0.80
2365191--2365252	30	2.2	28	83	13	83	25	16	1	56	1.49
2370114--2370181	27	2.6	27	90	4	104	41	13	11	33	1.81
2379426--2379453	4	7.0	4	100	0	56	25	0	25	50	1.50
2379803--2380024	82	2.7	83	95	4	389	35	9	20	34	1.85
2387028--2387059	16	2.0	16	93	0	55	34	25	6	34	1.81
2389430--2389474	21	2.1	21	83	0	54	26	17	6	48	1.72
2389493--2389801	147	2.1	146	95	0	564	39	8	16	36	1.78
2391709--2391757	2	24.5	2	83	8	64	44	4	0	51	1.20
2395039--2395119	33	2.5	31	84	8	81	56	3	1	38	1.25
2395048--2395119	33	2.2	33	85	7	94	56	4	1	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2395106--2395181	15	5.3	14	72	20	59	63	3	0	32	1.13
2395106--2395181	28	2.7	27	80	13	73	63	3	0	32	1.13
2395106--2395163	21	2.7	22	74	15	66	63	3	0	32	1.11
2395752--2395809	18	3.3	17	72	13	55	31	0	1	67	1.01
2402505--2402692	22	8.7	22	84	4	222	28	28	23	19	1.98
2402527--2402646	62	1.9	62	87	0	177	30	30	22	16	1.96
2402487--2402670	84	2.2	84	85	0	242	29	29	22	18	1.97
2403579--2403751	86	2.0	86	98	0	337	35	20	6	36	1.80
2408983--2409045	22	2.9	22	79	9	74	31	30	20	17	1.96
2408927--2409015	40	2.2	40	85	0	133	28	34	19	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18