genome.fa.s8165.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2475796--2475849	24	2.2	24	83	12	65	70	1	5	22	1.18
2480697--2480788	48	1.9	48	95	0	166	47	17	9	25	1.78
2481823--2481887	18	3.6	18	95	0	121	12	30	27	29	1.93
2483325--2483465	65	2.2	64	83	7	178	27	20	18	33	1.96
2491985--2492120	65	2.1	64	86	6	186	27	22	18	31	1.97
2495549--2495587	21	1.9	20	84	5	51	46	2	0	51	1.14
2495649--2495712	33	1.9	34	84	9	87	54	1	0	43	1.09
2505406--2505451	21	2.3	20	92	7	58	67	0	21	10	1.21
2505387--2505464	27	2.9	27	81	9	88	66	0	21	11	1.23
2505396--2505472	27	2.9	27	71	21	63	66	0	22	11	1.24
2505745--2505786	17	2.5	17	85	11	52	73	0	7	19	1.05
2524636--2524662	2	13.5	2	100	0	54	48	0	0	51	1.00
2526899--2526950	20	2.6	19	82	14	61	32	17	21	28	1.96
2528767--2528829	18	3.3	18	79	16	81	26	30	23	19	1.98
2530340--2530500	64	2.5	63	84	7	189	27	20	18	34	1.95
2531433--2531472	2	19.5	2	94	5	71	47	2	0	50	1.14
2533791--2533860	18	3.7	18	73	14	68	24	30	22	22	1.99
2535374--2535534	64	2.5	63	85	5	207	27	20	18	34	1.95
2536656--2536708	25	2.1	25	83	13	65	75	0	3	20	0.96
2536674--2536735	12	5.0	12	73	11	54	69	1	4	24	1.17
2540159--2540215	22	2.6	22	85	0	78	35	17	15	31	1.92
2540276--2540338	22	2.9	22	95	0	108	30	15	25	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2540092--2540347	116	2.2	117	85	2	336	32	16	25	26	1.96
2540678--2540817	55	2.5	58	86	10	209	30	11	21	36	1.89
2540828--2540881	28	1.9	28	88	7	83	24	16	20	38	1.92
2540854--2540987	58	2.3	58	85	0	187	32	11	18	37	1.87
2543376--2543405	12	2.6	11	90	10	51	40	0	6	53	1.27
2552778--2552836	21	2.8	21	82	10	75	22	6	16	54	1.66
2553050--2553141	44	2.1	43	90	6	141	33	18	18	29	1.95
2556521--2556703	28	6.5	28	85	5	262	34	4	21	39	1.73
2556521--2556703	55	3.3	54	87	6	258	34	4	21	39	1.73
2560725--2560784	12	5.0	12	71	15	52	20	13	16	50	1.78
2560704--2560796	24	3.9	24	78	0	87	22	12	16	48	1.80
2562840--2562885	18	2.6	18	85	0	65	19	47	15	17	1.82
2562861--2562898	13	2.9	13	84	0	58	15	42	21	21	1.89
2562901--2562930	10	3.0	10	95	0	51	20	36	20	23	1.95
2565389--2565448	12	5.0	12	78	8	68	16	16	16	50	1.79
2565352--2565455	48	2.2	48	83	10	124	19	16	15	49	1.80
2565389--2565460	24	3.0	24	80	8	92	18	13	16	51	1.77
2566464--2566517	26	2.1	26	85	0	72	29	7	14	48	1.71
2570599--2570642	19	2.3	19	100	0	88	29	11	25	34	1.91
2572615--2572746	29	4.6	29	85	2	169	34	6	20	38	1.77
2572630--2572737	57	1.9	57	90	0	171	36	5	19	38	1.75
2573621--2573751	31	4.2	30	76	5	111	19	25	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2573621--2573751	62	2.1	61	81	8	149	19	25	26	27	1.99
2575943--2575992	19	2.6	19	80	3	64	16	30	0	54	1.42
2578019--2578254	43	5.5	43	78	7	203	27	17	23	30	1.97
2578771--2578828	21	2.8	21	82	10	66	8	27	24	39	1.84
2578765--2578840	21	3.7	21	75	3	64	6	32	19	40	1.78
2582154--2582345	42	4.6	42	84	0	233	41	16	17	25	1.89
2583902--2584004	41	2.5	41	91	0	161	33	18	12	35	1.89
2594464--2594501	13	2.9	14	84	11	53	26	2	0	71	1.00
2594543--2594612	17	4.4	17	67	20	51	24	8	0	67	1.19
2600110--2600147	16	2.4	16	84	16	53	7	0	5	86	0.69
2601035--2601059	9	2.8	9	100	0	50	80	0	0	20	0.72
2601122--2601200	40	2.0	40	85	9	110	56	7	5	30	1.49
2601601--2601635	2	17.5	2	100	0	70	51	0	0	48	1.00
2601695--2601737	18	2.5	17	85	7	61	67	2	4	25	1.22
2603095--2603641	106	5.2	106	88	1	756	23	16	22	37	1.93
2604497--2604573	36	2.1	38	90	4	122	37	15	22	24	1.93
2606130--2606163	16	2.1	17	89	10	54	0	8	8	82	0.85
2606130--2606178	20	2.8	16	75	19	53	0	12	8	79	0.93
2610544--2610597	14	3.9	14	78	9	56	74	1	9	14	1.15
2619540--2619576	14	2.6	14	91	0	56	13	37	21	27	1.91
2630924--2630956	16	2.0	17	88	5	50	42	9	12	36	1.74
2636295--2636335	18	2.3	18	95	4	75	41	29	9	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2638144--2638184	17	2.4	18	80	12	50	75	2	4	17	1.08
2638171--2638217	3	16.3	3	78	8	53	68	6	0	25	1.13
2638233--2638266	15	2.3	15	94	0	59	52	8	0	38	1.33
2638276--2638310	17	2.2	16	90	10	54	45	5	2	45	1.41
2638316--2638398	37	2.2	38	82	16	95	46	4	2	45	1.37
2640384--2640424	21	2.0	21	95	0	73	48	12	0	39	1.41
2640782--2641190	81	5.0	82	88	1	569	30	21	10	36	1.88
2641091--2641132	22	1.9	22	90	0	66	30	21	11	35	1.90
2641560--2641613	22	2.6	21	82	8	65	27	22	14	35	1.93
2641570--2641612	22	2.0	22	90	0	68	30	20	11	37	1.89
2641580--2641724	41	3.2	41	67	26	114	24	23	11	40	1.88
2641560--2641779	94	2.3	94	85	3	273	24	22	12	40	1.89
2642599--2642716	54	2.2	54	83	1	139	24	25	11	38	1.88
2648970--2649039	17	4.1	17	78	7	70	41	8	12	37	1.74
2650720--2651200	162	3.0	162	90	1	757	30	21	11	37	1.88
2650683--2651203	81	6.4	81	86	2	670	30	21	11	36	1.89
2651577--2651630	22	2.6	21	82	8	65	27	22	14	35	1.93
2651587--2651629	22	2.0	22	90	0	68	30	20	11	37	1.89
2651597--2651741	41	3.2	41	67	26	114	24	23	11	40	1.88
2651577--2651796	94	2.3	94	85	3	282	23	23	12	40	1.89
2652615--2652732	54	2.2	54	83	1	139	24	25	11	38	1.88
2653123--2653531	81	5.0	82	89	1	585	30	21	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2653432--2653473	22	1.9	22	90	0	66	30	21	11	35	1.90
2653901--2653954	22	2.6	21	82	8	65	27	22	14	35	1.93
2653911--2653953	22	2.0	22	90	0	68	30	20	11	37	1.89
2653901--2654119	94	2.3	94	85	2	260	23	22	12	41	1.88
2654090--2654139	20	2.5	20	93	0	91	22	22	12	44	1.85
2667311--2667353	19	2.2	20	88	12	63	48	0	6	44	1.29
2669138--2669205	13	5.4	13	72	18	54	76	1	2	19	0.99
2669163--2669205	15	2.8	16	86	13	63	81	0	0	18	0.69
2669138--2669234	25	3.8	26	75	16	96	74	3	4	18	1.11
2669179--2669261	33	2.5	34	80	11	100	71	4	6	18	1.25
2669179--2669261	34	2.4	34	82	11	100	71	4	6	18	1.25
2669138--2669255	50	2.3	50	81	7	123	72	4	5	17	1.22
2670582--2671090	36	13.8	37	83	9	593	43	5	3	47	1.44
2670582--2671090	113	4.6	110	81	12	566	43	5	3	47	1.44
2672353--2673073	5	146.6	5	93	5	1251	20	0	20	59	1.39
2673194--2673239	19	2.4	19	92	0	74	45	23	6	23	1.76
2673205--2673245	19	2.4	17	88	12	57	43	31	4	19	1.72
2676220--2676276	24	2.4	24	93	0	96	26	12	17	43	1.84
2677505--2677562	13	4.6	12	76	8	53	22	20	0	56	1.42
2680940--2680969	13	2.4	12	94	5	51	60	6	6	26	1.47
2682843--2682907	23	2.8	23	83	0	76	44	16	16	21	1.86
2687724--2687769	20	2.3	19	89	10	74	54	10	17	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2687889--2687935	20	2.4	19	82	10	67	53	10	17	19	1.72
2687898--2687940	20	2.3	19	88	11	63	51	11	16	20	1.75
2690168--2690231	21	3.0	21	79	6	67	40	15	28	15	1.88
2690265--2690330	33	2.0	33	87	0	96	27	0	48	24	1.51
2692125--2692173	19	2.6	19	93	0	80	30	2	10	57	1.43
2692292--2693041	198	3.8	198	97	0	1410	37	15	16	31	1.89
2695191--2695255	25	2.6	25	80	0	85	35	9	13	41	1.77
2695602--2695665	23	2.8	23	87	0	92	35	6	20	37	1.78
2695602--2695674	23	3.2	23	82	7	85	34	5	20	39	1.76
2695943--2695993	25	2.0	25	92	0	84	33	7	19	39	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11