genome.fa.s8165.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471760--472233	145	3.2	145	85	4	614	30	21	12	35	1.91
471760--472233	49	9.7	49	83	5	548	30	21	12	35	1.91
475155--475281	49	2.6	49	89	0	191	25	22	15	36	1.94
477465--477580	29	4.0	28	72	11	83	33	18	6	41	1.77
478396--478471	31	2.5	31	91	2	127	38	11	11	38	1.79
480748--480855	17	6.5	17	75	13	100	63	4	12	18	1.45
480749--480855	50	2.2	49	86	8	146	64	4	13	17	1.44
480799--480838	16	2.4	16	87	4	53	65	2	15	17	1.39
480833--480883	16	3.2	16	78	8	50	62	9	13	13	1.54
485413--485495	33	2.5	32	84	7	114	42	37	10	9	1.73
486872--486949	20	4.1	18	74	19	61	41	1	3	53	1.27
486872--486954	30	2.7	31	80	12	93	40	1	3	54	1.26
489598--489650	18	2.8	19	91	8	90	35	20	13	30	1.91
495334--495678	173	2.0	174	95	2	624	39	20	6	34	1.78
495755--495914	80	2.0	80	98	0	311	35	20	8	35	1.84
503990--504138	76	2.0	76	97	0	280	32	14	15	37	1.87
504790--505083	94	3.1	94	79	5	317	30	14	21	32	1.94
505267--505948	38	18.6	36	68	11	258	39	12	16	31	1.86
505362--505692	150	2.2	148	84	5	425	41	12	15	30	1.84
505267--505867	74	8.2	73	76	8	544	39	12	16	31	1.86
505668--505721	27	2.0	27	100	0	108	51	14	11	22	1.73
505695--505945	112	2.2	114	92	1	416	39	13	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513652--513717	25	2.7	25	75	13	66	33	1	7	57	1.36
515493--515518	13	2.0	13	100	0	52	23	23	0	53	1.46
524898--524922	2	12.5	2	100	0	50	48	0	0	52	1.00
525047--525112	25	2.7	25	75	13	66	34	0	7	57	1.27
526887--526940	12	4.3	12	77	9	54	35	1	16	46	1.58
526891--526939	20	2.3	21	86	6	64	32	2	18	46	1.60
529517--529671	76	2.0	77	86	1	213	20	14	18	46	1.84
534185--534223	2	19.5	2	100	0	78	48	0	0	51	1.00
540114--540143	7	4.3	7	100	0	60	0	26	0	73	0.84
547114--547240	3	42.0	3	85	1	137	40	0	0	59	0.97
548571--548621	20	2.6	20	81	3	59	25	25	27	21	1.99
549183--549247	31	2.1	31	85	5	87	21	20	23	35	1.96
549233--549331	30	3.3	30	92	1	155	21	22	26	30	1.99
549604--549631	2	14.0	2	100	0	56	50	0	0	50	1.00
550695--550850	64	2.4	64	76	9	156	33	21	18	26	1.96
550818--550868	20	2.6	20	81	3	59	25	25	27	21	1.99
551433--551510	31	2.5	31	78	12	79	21	19	23	35	1.96
551483--551583	29	3.4	30	86	4	143	21	19	25	32	1.97
557579--557637	6	9.8	6	82	14	77	81	0	18	0	0.69
557569--557637	16	4.3	16	79	16	72	81	0	18	0	0.70
559987--560126	75	1.9	76	84	4	194	37	14	15	32	1.88
559968--560148	76	2.4	75	77	8	206	35	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560999--561156	54	2.9	53	85	6	219	37	15	21	25	1.93
562254--562683	76	5.7	76	93	0	691	23	18	21	36	1.95
563123--563148	3	8.7	3	100	0	52	65	0	0	34	0.93
563151--563212	3	20.3	3	86	3	88	37	0	1	61	1.06
564470--564529	11	5.4	11	75	18	61	30	3	1	65	1.19
564549--564931	148	2.5	149	81	10	447	39	5	8	45	1.58
573977--574040	21	3.0	21	81	4	65	25	35	23	15	1.94
587421--587473	19	2.8	19	81	16	65	45	5	9	39	1.60
588788--588854	20	3.4	18	75	18	55	31	17	13	37	1.89
593680--593725	20	2.3	20	88	3	67	36	28	0	34	1.58
595678--595736	21	2.7	21	94	5	100	38	16	11	32	1.86
598258--598341	34	2.4	35	84	2	98	20	20	17	41	1.90
599771--599816	20	2.3	20	88	3	67	36	30	0	32	1.58
600935--600992	12	4.8	12	71	12	55	44	5	8	41	1.57
600863--601145	37	7.7	37	85	5	360	43	4	9	41	1.59
601279--601326	13	3.8	13	80	5	53	12	6	0	81	0.87
605977--606251	46	6.0	46	89	1	417	22	24	9	43	1.82
620491--620559	28	2.4	29	85	9	88	52	0	0	47	1.00
620514--620558	22	2.0	22	87	8	65	53	0	0	46	1.00
620707--621165	76	6.0	76	97	1	841	35	22	21	21	1.96
621841--621895	22	2.5	22	84	0	74	41	14	7	36	1.74
622284--622443	59	2.9	54	80	8	194	23	22	15	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624451--624676	114	2.0	114	91	0	371	31	22	14	30	1.94
627078--627125	2	24.0	2	100	0	96	50	0	0	50	1.00
633887--633936	16	3.2	16	72	21	52	56	0	0	44	0.99
638267--638300	15	2.3	15	89	0	50	52	2	23	20	1.60
641736--641766	15	2.1	15	93	0	53	25	29	16	29	1.96
648323--648381	30	1.9	32	86	6	86	28	25	25	20	1.99
648325--648393	32	2.2	30	84	5	84	27	28	24	18	1.98
655091--655123	17	1.9	17	93	0	57	48	12	6	33	1.65
661627--661663	18	2.1	18	94	0	65	35	27	2	35	1.71
665319--665368	25	2.0	25	96	0	91	38	24	8	30	1.84
666867--666933	33	2.0	33	100	0	134	28	23	11	35	1.91
669855--669903	25	2.0	25	92	8	82	38	24	8	28	1.84
673376--673447	34	2.1	37	84	10	98	43	2	0	54	1.15
673493--673546	23	2.3	24	77	3	65	33	1	1	62	1.16
673876--673936	26	2.3	26	82	2	68	47	0	0	52	1.00
674722--674973	127	2.0	127	89	3	391	34	23	11	30	1.90
680401--680430	3	10.0	3	92	0	51	33	0	3	63	1.11
684495--684572	19	3.8	20	78	10	79	76	3	17	1	1.00
684506--684573	29	2.3	29	79	16	77	77	2	17	1	0.96
686590--686773	43	4.3	43	89	0	278	25	13	32	28	1.94
686774--686909	42	3.2	43	83	2	141	26	13	30	30	1.94
686976--687023	22	2.2	22	100	0	96	25	16	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686976--687073	22	4.5	22	75	10	85	23	18	23	34	1.96
686999--687080	42	2.0	42	90	0	128	23	19	21	35	1.96
687063--687364	90	3.4	90	93	0	507	27	19	20	32	1.97
687331--687444	42	2.7	41	75	11	108	28	24	19	28	1.98
687666--687734	35	1.9	36	85	2	95	26	17	15	40	1.89
687712--687800	29	3.0	27	82	14	97	34	17	12	34	1.88
693873--694049	91	1.9	91	95	0	318	40	14	19	25	1.89
693773--694191	230	1.8	230	93	0	721	38	16	19	25	1.93
703867--704029	89	1.8	88	82	3	211	36	8	14	40	1.76
703862--704049	44	4.2	45	77	8	134	38	7	14	38	1.75
704224--704439	58	3.7	57	86	4	288	37	5	11	46	1.62
704226--704439	117	1.8	115	86	5	304	36	5	11	46	1.62
704502--704638	58	2.4	58	81	7	147	37	3	11	47	1.58
704599--704677	39	2.0	39	85	0	104	40	6	7	45	1.58
704638--704768	58	2.3	58	77	7	140	39	6	10	42	1.66
712208--712321	60	1.9	60	83	7	151	41	15	14	28	1.86
718315--718375	30	2.0	30	90	0	95	31	24	19	24	1.98
723025--723057	14	2.4	14	94	0	57	33	6	30	30	1.82
723266--723295	12	2.5	12	94	0	51	0	0	26	73	0.84
724739--724916	90	2.0	90	93	0	302	46	6	10	36	1.65
731577--731844	90	3.0	90	93	1	448	46	5	10	37	1.62
734940--734992	16	3.4	16	69	10	56	32	20	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734933--735019	30	2.9	30	94	0	147	31	25	14	28	1.95
741466--741500	13	2.7	13	90	0	52	37	11	14	37	1.82
747998--748031	6	5.7	6	96	0	59	38	14	11	35	1.83
748067--748120	23	2.2	25	81	12	69	22	9	9	59	1.57
750688--750786	10	10.3	9	76	12	90	15	27	28	29	1.96
750688--750786	19	5.2	19	80	13	89	15	27	28	29	1.96
750687--750786	29	3.4	30	85	9	127	16	27	28	29	1.97
750783--750825	22	2.0	22	100	0	86	18	48	23	9	1.76
750815--750845	7	4.4	7	95	0	53	16	25	29	29	1.96
751718--751798	32	2.6	32	82	2	92	16	29	30	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11