genome.fa.s8165.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242038--242080	19	2.2	20	91	4	70	48	23	13	13	1.79
242067--242115	20	2.5	20	93	0	80	34	26	20	18	1.95
242137--242167	14	2.2	14	94	0	53	51	22	19	6	1.69
242107--242172	33	2.0	34	87	3	98	46	21	19	12	1.82
244124--244148	12	2.1	12	100	0	50	60	16	16	8	1.58
244184--244236	20	2.7	19	80	5	61	47	24	16	11	1.80
244615--244679	22	3.0	22	84	4	89	21	16	43	18	1.88
244817--245096	21	13.6	21	77	11	285	21	15	25	37	1.92
244816--245113	41	7.3	41	91	3	456	22	15	25	37	1.93
244826--245113	124	2.3	122	91	2	470	21	14	26	37	1.92
245694--245726	2	16.0	2	93	6	57	48	0	3	48	1.17
246673--246746	21	3.3	23	73	9	71	35	16	13	35	1.88
251180--251224	23	2.0	23	81	0	54	73	4	6	15	1.21
253090--253184	35	2.7	35	95	1	165	32	9	17	40	1.82
253157--253303	65	2.2	65	78	12	149	38	10	19	31	1.87
253253--253644	36	11.2	35	74	14	255	40	10	19	29	1.85
253199--253440	100	2.4	99	86	4	333	39	9	20	30	1.84
253511--253644	37	3.6	37	94	1	225	42	9	20	27	1.83
253552--253613	20	3.2	20	63	28	53	46	6	19	27	1.74
253634--253699	33	2.0	33	100	0	132	27	9	24	39	1.85
254979--255206	95	2.6	86	78	16	266	32	20	18	28	1.96
255037--255218	95	1.9	95	90	2	294	29	20	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259359--259399	2	20.5	2	94	0	73	48	0	0	51	1.00
259451--259489	19	2.1	19	95	0	69	66	5	10	17	1.39
259530--259569	19	2.0	20	85	4	55	72	2	5	20	1.15
259584--259629	23	2.0	23	86	4	65	52	0	21	26	1.47
262021--262086	27	2.4	27	97	0	123	37	16	18	27	1.92
263398--263435	20	1.9	20	88	0	58	21	26	10	42	1.85
275040--275178	67	2.1	68	86	1	190	40	16	11	31	1.84
276960--277010	18	2.8	18	80	14	68	49	11	21	17	1.79
280932--280983	18	2.8	18	80	13	70	50	11	21	17	1.77
282648--282675	14	2.0	14	100	0	56	57	7	7	28	1.52
289145--289172	14	2.0	14	100	0	56	57	7	7	28	1.52
298965--299035	32	2.3	31	92	2	115	56	5	22	15	1.60
300800--300886	30	2.9	29	79	14	86	50	6	6	35	1.56
301382--301408	6	4.5	6	100	0	54	33	33	0	33	1.58
309239--309292	20	2.6	22	88	8	78	25	14	31	27	1.95
317676--318061	55	7.1	55	90	1	526	36	17	15	30	1.91
323701--323760	22	2.7	22	76	0	66	23	16	23	36	1.94
324060--324124	29	2.2	28	81	7	76	47	7	12	32	1.69
325974--326038	31	2.1	31	88	5	96	32	18	12	36	1.88
331395--331476	30	2.8	29	77	12	78	42	7	17	32	1.76
331395--331452	29	2.0	29	83	10	73	39	8	17	34	1.80
333316--333472	31	5.1	31	88	6	237	27	18	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337356--337417	30	2.1	31	82	14	78	25	17	9	46	1.79
337462--337534	39	1.9	37	86	5	101	65	2	8	23	1.33
342994--343038	18	2.4	19	85	7	56	71	0	6	22	1.09
345606--345737	51	2.6	51	82	8	137	21	20	11	46	1.82
345629--345737	51	2.1	51	86	1	146	20	20	11	47	1.81
345706--345773	30	2.4	28	82	5	82	25	20	10	44	1.83
351447--351505	19	3.1	19	75	4	57	69	0	6	23	1.12
351448--351520	27	2.8	26	76	13	62	69	0	8	21	1.14
351563--351592	13	2.3	13	94	0	51	73	0	0	26	0.84
352168--352319	72	2.1	76	86	7	215	56	13	0	29	1.42
353846--353908	3	21.7	3	88	6	94	36	1	0	61	1.05
357578--357664	43	2.0	44	84	2	113	29	10	24	35	1.88
357729--357773	21	2.1	21	84	8	56	17	17	6	57	1.60
361005--361058	15	3.6	15	77	7	56	77	1	18	1	0.95
365803--365859	22	2.6	23	91	5	91	33	14	12	40	1.83
366215--366497	113	2.5	113	95	0	505	38	18	18	25	1.93
366403--366569	73	2.3	73	96	0	307	36	19	15	28	1.92
366984--367043	3	20.7	3	85	13	81	35	1	0	63	1.05
366987--367043	8	7.6	8	77	18	61	35	1	0	63	1.05
368936--368992	28	2.0	28	80	16	64	38	3	5	52	1.41
369284--369335	23	2.3	22	80	9	59	36	3	0	59	1.16
369628--369680	2	26.5	2	96	0	97	47	1	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370078--370107	14	2.1	14	93	0	51	40	30	10	20	1.85
370167--370311	75	1.9	75	95	0	263	33	20	11	34	1.89
372256--372289	2	17.0	2	100	0	68	50	0	0	50	1.00
372673--372715	22	2.0	22	85	0	59	41	0	0	58	0.98
372671--372723	26	2.0	26	82	7	63	47	0	0	52	1.00
373450--373491	21	1.9	23	85	9	61	7	38	7	47	1.58
377633--377693	5	11.8	5	78	16	54	16	1	3	78	0.96
377626--377688	18	3.4	18	78	10	65	17	1	3	77	0.97
377626--377678	26	2.0	25	82	13	63	18	0	3	77	0.92
393993--394031	18	2.1	19	90	4	62	35	25	20	17	1.95
397213--397237	12	2.1	12	100	0	50	40	0	8	52	1.31
405829--405869	11	3.6	11	83	3	55	78	0	4	17	0.93
405813--405870	29	2.0	31	87	12	88	77	0	5	17	0.94
405822--405870	4	13.0	4	81	12	59	77	0	4	18	0.92
405817--405865	18	2.7	18	87	3	62	79	0	6	14	0.91
405822--405870	7	6.5	8	83	6	59	77	0	4	18	0.92
405829--405884	29	2.0	26	90	10	85	73	1	8	16	1.17
405959--405991	8	4.0	8	96	4	57	84	0	0	15	0.61
405855--405989	62	2.2	61	79	12	141	71	1	4	22	1.13
407586--407663	34	2.4	33	83	12	90	51	6	5	37	1.50
408307--408544	85	2.8	85	83	2	291	25	17	21	35	1.95
410622--410665	19	2.3	19	84	0	61	36	13	20	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411101--411495	45	8.8	45	88	0	574	40	12	23	24	1.89
418088--418480	45	8.6	45	85	5	495	38	12	24	24	1.90
418275--418425	52	3.1	52	79	13	201	39	11	23	25	1.89
423050--423083	4	8.2	4	87	6	50	76	2	0	20	0.92
423049--423096	20	2.3	20	85	7	60	75	2	0	22	0.91
425536--425774	85	2.8	84	80	5	266	27	17	19	35	1.95
427091--427118	9	3.1	9	100	0	56	42	0	10	46	1.38
427939--428009	19	3.5	20	79	9	72	32	15	21	30	1.94
428418--428937	45	11.6	45	86	3	656	39	11	23	25	1.89
430265--430461	95	2.1	95	99	0	385	51	10	16	21	1.74
434552--434595	20	2.1	21	91	4	72	52	4	2	40	1.34
434606--434679	15	5.1	15	74	9	73	41	1	2	54	1.23
434588--434680	42	2.2	43	92	3	154	41	2	4	51	1.33
446676--446804	52	2.5	52	94	0	222	28	15	27	28	1.96
448129--448185	8	7.7	7	79	14	53	0	17	0	82	0.67
448129--448187	10	5.4	10	82	13	64	0	16	0	83	0.66
448942--448985	20	2.2	20	91	0	70	36	18	15	29	1.92
448942--448994	20	2.7	20	87	0	61	37	16	16	28	1.91
449065--449124	21	2.9	21	87	0	84	38	16	18	26	1.92
449233--449284	20	2.6	20	90	0	77	32	30	9	26	1.89
454603--454660	21	2.8	21	78	0	62	12	25	34	27	1.91
457242--457280	4	9.8	4	94	0	69	51	20	0	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457270--457333	2	33.0	2	90	6	105	51	1	0	46	1.10
457270--457330	17	3.6	17	95	2	106	52	1	0	45	1.10
457554--457583	2	15.0	2	100	0	60	50	0	0	50	1.00
460065--460207	77	1.9	77	93	0	250	39	8	21	30	1.83
463485--463632	76	1.9	76	91	0	242	41	18	13	26	1.87
464185--464210	6	4.3	6	100	0	52	50	0	15	34	1.45
464838--464866	11	2.6	11	100	0	58	17	10	10	62	1.54
466959--466991	16	2.1	16	88	5	50	45	15	0	39	1.46
467451--467509	30	2.0	30	100	0	118	27	27	16	28	1.97
468988--469032	20	2.3	20	88	3	65	35	24	2	37	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11