genome.fa.s8165.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1387185--1387221	13	2.8	13	87	0	56	21	59	16	2	1.49
1387835--1387868	17	2.0	17	88	11	52	23	20	32	23	1.98
1388023--1388096	3	25.0	3	97	2	141	66	0	0	33	0.92
1391109--1391165	27	2.0	29	86	6	82	43	1	3	50	1.29
1391238--1391286	26	1.9	25	83	4	62	36	12	4	46	1.60
1397373--1397562	95	2.0	95	94	0	335	34	23	12	28	1.92
1403087--1403164	23	3.3	23	81	1	93	32	23	19	25	1.98
1403174--1403388	103	2.1	103	94	0	376	36	23	13	26	1.92
1404170--1404327	64	2.5	64	77	8	160	26	18	21	32	1.97
1406240--1406299	29	2.1	29	87	0	84	28	20	20	31	1.97
1407537--1407569	17	1.9	17	88	11	50	36	21	0	42	1.53
1408445--1408506	29	2.1	30	82	8	74	35	19	3	41	1.67
1409812--1409858	3	15.7	3	100	0	94	65	0	0	34	0.93
1409857--1409891	3	11.7	3	100	0	70	34	0	0	65	0.93
1417071--1417159	26	3.3	26	65	25	67	35	13	7	42	1.73
1417076--1417223	55	2.7	55	82	9	187	34	14	6	44	1.71
1417086--1417170	26	3.2	26	65	21	66	32	16	7	43	1.75
1421044--1421152	55	2.1	51	91	6	173	33	14	8	43	1.76
1428773--1428832	30	2.0	30	93	0	102	18	18	18	45	1.86
1431258--1431282	2	12.5	2	100	0	50	0	48	0	52	1.00
1432106--1432326	108	2.0	109	99	0	435	38	22	12	25	1.90
1433684--1433713	15	2.0	15	93	0	51	43	16	13	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1442312--1442362	21	2.5	21	96	3	95	13	31	0	54	1.39
1443580--1443662	43	1.9	43	82	4	105	30	13	25	31	1.93
1443706--1443743	18	2.1	18	100	0	76	15	10	31	42	1.81
1443758--1443838	42	1.9	42	92	0	135	25	22	20	30	1.98
1444265--1444373	21	5.2	21	76	6	78	4	35	18	41	1.71
1450179--1450389	82	2.6	82	80	3	246	36	17	14	31	1.90
1451814--1452145	83	4.0	82	74	9	255	34	20	11	33	1.89
1452745--1452797	21	2.6	20	82	8	63	26	22	20	30	1.98
1452752--1452797	20	2.2	21	85	11	60	23	26	21	28	1.99
1456917--1457022	23	4.7	22	78	6	90	30	26	18	24	1.98
1460282--1460336	23	2.4	24	81	9	78	30	29	20	20	1.97
1460914--1460947	18	1.9	17	88	5	50	26	23	17	32	1.97
1464799--1464847	22	2.2	22	88	0	71	40	12	12	34	1.80
1470788--1471048	44	6.0	44	82	0	301	29	22	16	31	1.95
1470784--1471041	132	2.0	131	84	2	338	29	22	16	32	1.95
1473665--1473723	26	2.3	26	96	0	109	27	15	23	33	1.95
1477487--1477559	21	3.5	21	79	3	85	30	17	21	30	1.97
1498940--1498982	18	2.4	18	100	0	86	20	11	37	30	1.89
1499048--1499086	18	2.2	18	85	0	51	28	20	12	38	1.89
1508230--1508391	53	3.1	53	94	0	279	33	19	16	30	1.94
1514440--1514549	40	2.8	40	94	0	184	22	16	27	33	1.95
1514654--1515000	47	7.5	47	94	1	567	38	8	20	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1516187--1516232	20	2.3	19	85	14	58	26	15	8	50	1.73
1529937--1529962	3	8.7	3	100	0	52	69	0	0	30	0.89
1530462--1530736	53	5.2	53	91	1	462	33	18	16	31	1.93
1539422--1539453	14	2.4	14	94	5	57	6	9	0	84	0.78
1539757--1539788	16	2.0	16	93	0	55	25	21	6	46	1.74
1542585--1542640	20	2.8	20	86	7	78	21	17	25	35	1.95
1549881--1549954	21	3.5	21	74	7	78	32	4	17	45	1.67
1549874--1549954	42	1.9	42	97	0	153	29	3	17	49	1.64
1551238--1551292	2	27.5	2	100	0	110	50	0	0	49	1.00
1551382--1551554	80	2.2	80	90	2	267	27	17	18	36	1.94
1552865--1553575	107	6.6	108	85	5	872	39	21	10	28	1.87
1552820--1553575	54	14.1	54	81	4	857	39	21	10	28	1.87
1555140--1555226	43	2.0	43	97	0	165	24	21	9	44	1.81
1558461--1558558	18	5.5	18	71	9	76	39	13	10	36	1.78
1558460--1558564	36	3.0	35	79	9	115	39	12	10	38	1.77
1558769--1558806	3	12.7	3	100	0	76	34	0	0	65	0.93
1563581--1563625	18	2.4	19	81	11	56	22	4	8	64	1.40
1563498--1563724	114	2.0	114	100	0	454	30	5	9	54	1.55
1573334--1573474	72	2.0	72	92	0	237	34	15	14	35	1.89
1575978--1576021	19	2.3	19	78	21	56	56	2	2	38	1.24
1576788--1576813	13	2.0	13	100	0	52	30	0	0	69	0.89
1582666--1582746	28	3.0	28	78	7	78	62	2	1	33	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1584513--1584801	104	2.8	104	82	2	303	27	22	15	34	1.94
1588742--1588767	5	5.2	5	100	0	52	57	0	42	0	0.98
1596011--1596665	49	13.4	49	85	3	720	31	21	13	34	1.91
1604404--1604824	49	8.6	49	87	1	562	29	22	12	35	1.91
1604404--1604824	146	2.9	145	87	3	567	29	22	12	35	1.91
1617621--1617659	20	2.0	20	84	0	51	17	2	7	71	1.21
1617904--1617953	16	3.1	16	83	11	59	68	0	2	30	1.01
1619371--1619455	41	2.1	41	88	0	125	12	17	7	62	1.52
1622981--1623044	33	1.9	33	84	9	85	12	15	4	67	1.39
1626507--1626582	36	2.1	36	92	0	125	35	15	13	35	1.87
1630610--1630981	49	7.6	49	79	1	377	29	24	14	32	1.94
1630603--1630919	148	2.1	147	86	0	445	28	24	14	31	1.95
1630603--1630972	148	2.5	147	82	1	391	29	24	13	31	1.94
1630610--1630985	98	3.8	98	84	4	452	29	24	14	32	1.94
1634699--1634751	19	2.8	18	80	8	70	33	16	26	22	1.96
1637801--1638079	55	5.1	55	88	2	411	27	22	14	35	1.93
1637801--1638079	107	2.6	110	90	3	447	27	22	14	35	1.93
1638042--1638117	38	2.0	38	97	0	143	28	22	13	35	1.92
1638112--1638790	54	12.8	53	82	10	600	21	26	18	32	1.97
1638122--1638790	108	6.3	108	83	6	764	22	26	19	32	1.97
1638128--1638775	156	4.1	156	86	6	863	22	26	19	31	1.97
1640078--1640116	11	3.5	11	90	10	62	0	10	5	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640069--1640120	22	2.4	22	83	0	77	0	13	3	82	0.80
1640069--1640116	10	4.6	10	82	10	60	0	12	4	83	0.79
1654568--1654628	19	3.2	19	77	9	61	31	18	27	22	1.97
1656349--1656380	12	2.8	11	90	9	55	37	9	25	28	1.87
1657351--1657402	20	2.4	22	81	12	63	42	3	3	50	1.39
1658422--1658464	17	2.6	17	82	7	54	27	9	4	58	1.49
1662944--1663129	99	1.9	99	90	2	302	36	18	17	27	1.93
1667834--1667858	12	2.1	12	100	0	50	28	16	32	24	1.96
1669876--1669923	23	2.2	22	88	7	71	27	18	18	35	1.95
1670336--1670377	19	2.2	20	86	4	59	16	0	14	69	1.20
1672197--1672232	12	2.8	13	91	8	65	50	8	5	36	1.56
1673504--1673548	16	2.8	16	96	0	81	31	13	6	48	1.68
1673996--1674839	85	9.9	85	89	2	1167	34	20	19	25	1.96
1675226--1675278	21	2.4	22	81	9	63	43	3	3	49	1.38
1675334--1675363	3	10.0	3	100	0	60	33	0	0	66	0.92
1676458--1676492	2	17.5	2	100	0	70	48	0	0	51	1.00
1678796--1678835	21	1.9	21	89	0	62	10	25	40	25	1.86
1682618--1682657	21	1.9	21	85	10	55	35	10	2	52	1.48
1685950--1685996	2	23.5	2	100	0	94	48	0	0	51	1.00
1686543--1686730	38	5.1	38	83	8	244	43	2	8	46	1.46
1686533--1686730	74	2.7	72	88	6	260	42	2	9	46	1.47
1686694--1686758	28	2.3	28	86	7	87	44	3	9	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1686694--1686741	17	3.1	17	77	22	61	43	0	10	45	1.38
1686821--1686867	3	15.7	3	82	8	60	27	0	0	72	0.85
1686821--1686863	22	1.9	23	90	4	70	25	0	0	74	0.82
1686830--1686881	19	2.7	19	78	3	59	26	3	0	69	1.06
1687159--1687218	16	3.7	16	84	4	84	50	35	6	8	1.59
1687312--1687346	18	1.9	18	88	0	52	34	11	40	14	1.82
1687879--1687988	28	4.0	27	72	16	91	18	6	0	74	1.08
1687881--1687933	23	2.4	21	84	9	70	13	3	1	81	0.92
1687878--1687947	9	8.1	8	77	21	54	14	4	1	80	0.94
1687896--1688007	57	1.9	58	82	7	138	23	6	0	69	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11