genome.fa.s8165.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2696380--2696416	18	2.1	18	89	0	56	32	5	10	51	1.60
2696372--2696418	24	2.0	24	86	0	67	34	4	14	46	1.64
2696675--2696758	39	2.2	39	95	0	150	48	20	14	16	1.80
2697163--2697235	23	3.2	23	88	0	101	34	4	21	39	1.73
2698634--2698676	19	2.2	21	84	12	56	60	6	4	27	1.43
2699332--2699371	17	2.3	18	86	4	55	40	0	0	60	0.97
2703491--2703592	24	4.2	25	76	5	102	20	24	16	38	1.93
2703490--2703592	49	2.1	48	83	5	127	20	24	16	38	1.92
2703565--2703680	24	4.8	24	69	4	72	20	20	19	38	1.93
2705292--2705338	14	3.4	14	85	2	60	23	0	29	46	1.52
2705298--2705351	28	2.0	27	85	10	74	24	0	27	48	1.52
2711161--2711197	19	2.1	19	85	10	51	56	16	0	27	1.40
2716523--2717354	276	3.0	276	96	0	1477	37	15	12	35	1.85
2720253--2720309	23	2.5	23	88	0	87	26	14	22	36	1.92
2720454--2720867	220	1.9	224	89	4	649	31	12	15	40	1.84
2721257--2721302	18	2.6	18	93	3	76	32	19	10	36	1.87
2725742--2725791	19	2.6	19	75	9	57	42	4	54	0	1.19
2738859--2738928	23	3.3	20	69	13	59	28	20	20	31	1.97
2739320--2739361	18	2.3	18	88	8	59	28	0	7	64	1.20
2739391--2739432	12	3.4	13	83	9	61	35	9	7	47	1.64
2749796--2749918	29	4.2	29	79	7	92	20	21	17	39	1.92
2750685--2750784	19	5.3	19	70	9	80	19	4	24	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2750692--2750785	38	2.5	37	80	14	111	20	4	25	50	1.66
2750806--2751067	112	2.3	114	78	9	275	39	15	8	35	1.79
2753501--2753533	16	2.1	16	100	0	66	24	12	18	45	1.83
2753961--2754030	20	3.5	20	73	11	79	25	24	18	31	1.98
2753985--2754066	21	4.0	21	71	9	78	31	23	15	29	1.95
2753965--2754058	41	2.3	41	96	0	170	29	22	18	29	1.97
2755782--2755818	18	2.0	19	85	15	51	27	29	5	37	1.79
2757421--2757447	13	2.1	13	100	0	54	40	14	14	29	1.86
2757608--2757658	25	2.0	25	84	3	66	25	7	7	58	1.53
2762623--2762692	29	2.4	29	97	0	131	5	52	4	37	1.45
2771303--2771343	18	2.2	19	86	8	57	53	0	0	46	1.00
2774751--2774797	16	3.0	16	81	15	62	44	2	0	53	1.12
2784796--2784838	20	2.2	20	86	0	59	34	11	16	37	1.85
2801859--2802325	256	1.8	257	92	0	792	41	11	9	38	1.73
2802844--2802872	10	2.9	10	100	0	58	20	31	0	48	1.50
2802840--2802880	10	4.1	10	90	0	55	26	31	0	41	1.56
2802918--2802953	17	2.1	18	94	5	65	27	5	2	63	1.30
2808892--2808934	19	2.1	21	80	20	56	79	6	0	13	0.93
2808871--2808934	20	3.2	20	75	22	64	75	6	1	17	1.09
2810447--2810495	23	2.1	24	92	3	82	22	20	26	30	1.98
2812798--2812850	18	2.9	18	94	0	88	20	20	32	26	1.98
2825361--2825557	52	3.8	52	82	2	227	26	20	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2825943--2825994	2	26.5	2	96	3	97	50	0	0	50	1.00
2826987--2827040	25	2.2	25	100	0	108	44	16	11	27	1.82
2826998--2827043	14	3.5	14	71	17	53	47	15	10	26	1.78
2827572--2827621	22	2.3	22	92	0	82	32	26	8	34	1.85
2831510--2831565	20	2.8	20	97	2	103	16	21	21	41	1.90
2831511--2831584	21	3.6	21	90	1	105	18	21	20	39	1.93
2832467--2832533	22	3.0	22	91	2	98	29	13	29	26	1.94
2832389--2832641	117	2.2	116	80	3	285	32	15	25	26	1.95
2832954--2833549	54	11.3	54	84	4	777	28	18	20	32	1.96
2832959--2833541	212	2.8	210	84	6	725	28	18	19	32	1.96
2832954--2833528	266	2.2	266	87	4	799	28	18	20	32	1.96
2836456--2836509	26	2.1	26	89	0	81	37	25	12	24	1.91
2840333--2840406	3	24.7	3	97	0	139	32	1	0	66	1.00
2841444--2841493	26	1.9	26	91	0	82	32	28	18	22	1.97
2844982--2845018	19	1.9	19	94	0	65	43	10	13	32	1.79
2867240--2867285	23	2.0	24	86	4	67	8	26	36	28	1.86
2869255--2869325	36	2.0	36	91	0	115	14	26	36	22	1.92
2870780--2870830	22	2.3	22	80	6	59	15	27	33	23	1.95
2872309--2872357	20	2.6	18	80	9	53	18	10	4	67	1.36
2878961--2878987	13	2.1	13	100	0	54	22	37	7	33	1.82
2890003--2890129	52	2.5	52	92	2	204	28	29	14	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!