genome.fa.s8165.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751714--751798	31	2.7	31	81	1	98	15	29	29	25	1.96
751714--751837	63	2.0	63	82	6	153	17	27	28	26	1.98
758018--758139	10	12.7	9	76	13	118	14	26	28	30	1.95
758018--758139	19	6.3	18	81	10	118	14	26	28	30	1.95
758018--758139	29	4.2	29	90	6	185	14	26	28	30	1.95
758140--758184	22	2.0	22	100	0	90	17	51	22	8	1.73
758174--758232	7	8.4	7	88	0	91	15	28	25	30	1.96
759102--759178	31	2.5	31	82	2	100	14	25	31	28	1.95
759102--759225	63	2.0	63	82	6	153	16	27	29	26	1.97
764825--764873	25	2.0	25	88	8	73	59	2	8	30	1.38
769355--769388	10	3.4	10	92	8	52	91	0	8	0	0.43
769355--769389	14	2.5	14	95	0	61	91	0	8	0	0.42
770374--770419	21	2.1	22	92	4	76	17	13	4	65	1.42
778686--778745	16	3.8	16	97	0	111	30	18	21	30	1.97
784257--784590	54	6.2	54	88	0	461	30	11	17	40	1.84
784543--784666	55	2.3	54	81	4	133	33	14	16	36	1.89
791095--791540	54	8.2	54	86	0	579	32	14	17	36	1.90
795832--795879	24	2.0	24	91	0	78	31	16	20	31	1.95
800627--800724	44	2.3	43	84	7	119	34	19	18	27	1.95
803354--803408	20	2.6	21	83	11	60	29	16	21	32	1.95
810035--810098	29	2.2	29	83	5	76	68	7	10	12	1.38
811731--811768	18	2.1	19	90	5	60	23	7	5	63	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
816858--816956	44	2.3	43	84	3	128	35	16	18	30	1.92
822764--822838	21	3.5	20	76	20	71	41	21	10	26	1.86
823938--823991	14	3.7	15	78	7	58	77	5	14	1	1.03
823946--823987	15	2.9	15	85	3	50	80	2	16	0	0.81
826689--826762	37	2.0	38	81	2	87	27	17	10	44	1.82
827284--827628	137	2.5	136	79	5	329	36	22	16	24	1.94
827968--828016	23	2.3	23	86	10	68	34	0	0	65	0.93
834846--834878	3	11.3	3	93	6	59	66	0	0	33	0.92
837401--837452	3	17.3	3	100	0	104	67	0	0	32	0.91
840328--840373	17	2.7	17	86	0	74	58	6	19	15	1.58
840327--840416	34	2.6	34	82	3	119	62	6	16	14	1.52
856495--856565	30	2.4	30	86	11	94	29	7	23	39	1.81
869054--869080	2	13.5	2	100	0	54	51	0	0	48	1.00
869088--869141	16	3.2	16	84	7	63	53	27	0	18	1.45
874993--875032	21	1.9	21	89	0	62	30	7	7	55	1.56
876800--876953	78	2.0	78	97	0	290	41	16	5	36	1.72
877938--878274	57	6.0	57	85	2	418	32	20	10	36	1.87
878688--878756	20	3.5	20	92	2	104	23	26	13	37	1.91
881683--881717	15	2.3	15	90	9	54	42	8	8	40	1.66
881692--881848	84	1.9	84	90	0	251	35	15	7	41	1.76
885003--885056	26	2.1	26	92	0	90	22	16	25	35	1.95
887274--887360	31	2.8	31	75	8	95	22	24	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887646--887733	32	2.8	31	84	3	104	21	27	23	27	1.99
897252--897554	79	3.9	78	83	5	333	29	20	12	37	1.89
897311--897520	34	5.6	34	64	24	100	30	20	11	38	1.88
897991--898067	22	3.6	22	73	7	86	33	20	14	31	1.93
897979--898070	42	2.2	42	92	1	150	31	26	13	29	1.93
898013--898255	95	2.6	94	85	3	312	26	24	16	32	1.96
904081--904309	59	3.9	59	88	0	314	34	19	13	32	1.90
904361--904672	79	4.0	78	86	2	419	29	23	9	36	1.87
904520--904659	45	3.4	44	70	20	138	32	24	11	32	1.91
905117--905305	95	2.0	96	82	9	233	26	23	16	33	1.96
907234--907267	2	17.5	2	93	6	61	47	0	0	52	1.00
908190--908218	2	14.5	2	100	0	58	48	0	0	51	1.00
907014--908904	935	2.0	943	91	3	3106	35	18	8	37	1.82
910470--910665	59	3.4	58	75	9	186	38	17	9	33	1.83
910573--910692	57	2.1	59	81	6	138	35	21	10	32	1.88
910744--910965	45	5.5	43	68	23	149	28	25	11	34	1.90
910778--910999	34	5.9	34	69	21	140	27	24	12	35	1.91
910733--911053	79	4.1	79	89	0	473	27	23	11	37	1.90
912334--912606	54	5.1	54	92	0	429	37	16	13	32	1.87
919171--919433	54	4.9	54	89	2	377	37	15	13	33	1.86
934693--934762	23	3.0	23	82	0	86	30	17	22	30	1.97
938197--938227	12	2.6	12	100	0	62	41	6	29	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951757--951799	21	2.0	21	100	0	86	23	18	20	37	1.94
956932--956967	18	2.0	18	100	0	72	27	11	11	50	1.72
958467--958619	81	1.9	81	83	2	200	28	20	9	41	1.84
959033--959591	234	2.4	233	85	3	756	35	18	12	33	1.89
959033--959591	58	9.7	58	84	4	693	35	18	12	33	1.89
963084--963110	12	2.2	12	100	0	54	7	40	0	51	1.30
964728--965820	117	9.3	116	81	7	1200	35	19	11	34	1.87
964728--965820	58	18.7	59	82	7	1232	35	19	11	34	1.87
969066--969202	61	2.2	64	85	5	190	27	27	16	28	1.97
969354--969396	22	2.0	22	90	0	68	39	11	6	41	1.68
974504--974541	19	2.0	19	89	0	58	13	15	0	71	1.16
976645--976688	22	2.0	21	83	12	54	6	20	2	70	1.21
977997--978034	19	2.0	20	94	5	69	52	5	10	31	1.58
979301--979377	20	3.8	20	91	3	109	25	29	20	23	1.99
987941--987998	21	2.8	21	75	0	62	29	25	13	31	1.94
991472--991511	20	2.1	19	85	4	53	25	12	0	62	1.30
996271--996312	17	2.4	17	88	4	57	23	7	0	69	1.13
996359--996407	19	2.6	19	81	15	57	22	6	0	71	1.08
1000996--1001054	11	5.6	11	78	9	70	6	1	11	79	0.99
1001000--1001054	21	2.7	21	94	2	94	5	1	12	80	0.97
1001000--1001066	21	3.2	20	83	10	82	7	2	10	79	1.04
1003784--1003822	17	2.2	18	86	4	53	20	7	2	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014724--1014780	21	2.7	21	68	10	53	38	21	14	26	1.91
1021525--1021553	12	2.3	13	94	5	51	34	0	0	65	0.93
1021539--1021580	17	2.4	18	88	4	59	19	9	0	71	1.13
1027723--1027871	65	2.3	65	86	5	205	31	21	15	31	1.94
1027720--1027895	65	2.7	62	78	12	185	29	24	16	29	1.96
1033110--1033187	23	3.5	22	78	7	86	26	25	23	24	2.00
1035170--1035226	27	2.1	27	80	6	62	26	3	14	56	1.54
1035816--1035963	65	2.3	64	84	5	192	27	20	19	32	1.97
1036373--1036479	32	3.3	32	81	5	119	29	12	20	37	1.89
1037050--1037235	93	2.0	93	93	0	318	32	23	16	27	1.96
1037458--1037640	87	2.1	87	95	0	330	34	18	10	36	1.86
1037607--1037662	22	2.5	22	88	0	94	28	23	12	35	1.91
1037519--1037843	108	3.1	109	85	7	429	30	19	11	38	1.87
1037677--1037763	37	2.4	37	84	1	104	25	18	14	41	1.89
1037545--1037888	102	3.3	102	85	4	413	31	19	11	37	1.88
1037930--1038032	36	2.8	37	89	2	163	29	21	11	37	1.89
1038047--1038162	36	3.2	36	83	7	144	23	18	14	43	1.86
1038149--1038239	39	2.4	36	87	5	119	38	24	9	27	1.87
1039262--1039333	37	1.9	37	83	8	92	27	4	0	68	1.08
1039294--1039397	55	1.9	55	82	9	133	24	3	0	71	1.09
1039318--1039420	13	7.7	13	71	12	57	19	4	0	74	1.05
1039323--1039420	12	8.2	12	71	14	62	19	4	1	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1053952--1054267	54	5.9	54	81	6	356	29	19	18	33	1.95
1053953--1054267	108	2.9	108	84	4	406	29	19	18	33	1.95
1053953--1054272	162	2.0	161	84	4	421	29	19	17	32	1.95
1056977--1057018	18	2.3	19	80	12	52	59	0	11	28	1.33
1063674--1063722	22	2.2	22	100	0	98	48	12	8	30	1.69
1069987--1070031	24	1.9	23	82	13	56	48	26	2	22	1.62
1070845--1070969	47	2.8	43	81	10	126	32	18	8	40	1.81
1072017--1072079	29	2.2	29	85	5	83	33	22	4	39	1.75
1074682--1074763	10	8.1	10	76	10	69	3	12	1	82	0.85
1074699--1074763	8	7.9	8	79	19	64	3	9	1	86	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11