genome.fa.s8165.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2894944

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1687975--1688020	17	2.7	16	83	12	56	32	0	0	67	0.91
1687957--1688006	23	2.2	23	82	13	59	28	4	0	68	1.08
1689266--1689297	15	2.0	17	88	11	50	46	6	15	31	1.71
1689313--1689357	24	2.0	24	86	8	67	51	6	4	37	1.49
1691883--1691985	36	2.9	36	94	0	179	41	13	16	28	1.86
1699430--1699636	36	5.8	36	91	2	344	42	14	15	27	1.86
1703406--1704144	375	2.0	376	96	0	1372	31	17	18	32	1.94
1706497--1706645	36	4.1	36	78	12	153	43	1	8	46	1.43
1706610--1706655	16	3.1	16	79	20	64	45	0	10	43	1.39
1706610--1706670	28	2.2	28	94	2	106	45	1	9	42	1.47
1706707--1706772	3	21.7	3	74	20	57	27	1	1	69	1.06
1706710--1706768	19	3.1	19	78	9	66	27	1	1	69	1.07
1706706--1706773	22	3.1	22	81	10	70	26	1	1	70	1.04
1706710--1706768	9	6.2	10	82	9	70	27	1	1	69	1.07
1706719--1706782	14	4.6	14	74	16	53	23	3	0	73	0.97
1707136--1707194	16	3.7	16	86	0	91	49	37	6	6	1.56
1707924--1708020	8	12.2	8	68	13	51	21	4	2	72	1.12
1707922--1707972	15	3.5	15	71	13	52	13	3	1	80	0.94
1707922--1707990	28	2.5	29	81	6	72	15	5	1	76	1.04
1710565--1710681	58	2.0	58	100	0	234	41	17	13	27	1.87
1715711--1715770	29	2.1	29	87	3	86	50	0	8	41	1.33
1717396--1717534	36	3.9	36	95	0	242	25	13	17	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1718238--1718272	16	2.1	17	89	5	54	54	0	8	37	1.31
1723286--1723344	29	2.0	29	84	12	77	44	3	15	37	1.63
1724452--1724490	13	3.0	13	92	0	60	43	0	20	35	1.52
1725348--1725520	36	4.8	36	96	0	319	24	17	16	41	1.89
1737883--1738079	74	2.7	73	80	4	193	35	20	21	22	1.96
1737969--1738160	72	2.7	72	86	1	269	32	17	26	23	1.97
1740417--1740477	29	2.2	27	82	11	70	16	4	8	70	1.29
1749625--1749653	10	2.9	10	100	0	58	20	20	48	10	1.79
1751790--1751859	19	3.7	19	76	0	68	48	15	21	14	1.80
1772283--1772364	40	2.1	38	80	13	87	73	1	13	12	1.17
1780989--1781082	27	3.5	27	91	0	143	39	7	5	47	1.54
1781051--1781085	15	2.4	15	90	4	54	42	5	2	48	1.41
1781966--1782021	27	2.0	29	82	10	71	41	7	10	41	1.67
1782653--1782685	14	2.4	14	94	0	57	57	9	6	27	1.53
1782823--1782861	16	2.5	16	87	4	53	46	5	12	35	1.65
1791532--1791603	22	3.3	22	80	11	76	29	25	18	27	1.98
1791620--1791676	30	1.9	30	88	0	87	33	24	19	22	1.97
1792900--1793023	65	1.9	65	83	0	158	19	20	21	38	1.93
1799023--1799064	7	6.0	7	100	0	84	0	28	0	71	0.86
1800638--1800894	69	3.8	67	76	5	214	30	21	22	24	1.99
1801902--1802158	69	3.8	67	77	4	221	31	21	22	24	1.98
1805717--1805762	21	2.2	21	92	0	74	32	4	19	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1807293--1807543	139	1.8	139	94	1	450	34	13	12	39	1.83
1808495--1808562	28	2.3	29	80	7	75	42	2	1	52	1.25
1808937--1808979	22	2.0	22	95	0	77	48	11	2	37	1.52
1809008--1809068	29	2.1	28	85	8	79	39	9	6	44	1.64
1809149--1809236	30	3.0	29	76	14	83	48	7	4	38	1.53
1811061--1811094	3	11.3	3	100	0	68	67	0	0	32	0.91
1812268--1812327	26	2.3	27	79	2	68	50	1	5	43	1.34
1812593--1812685	44	2.1	45	95	2	170	31	21	9	37	1.86
1828198--1828336	42	3.4	42	81	6	133	30	33	1	33	1.67
1828222--1828336	42	2.8	42	83	1	151	31	36	0	32	1.58
1828222--1828384	81	2.0	83	81	6	197	31	33	0	33	1.63
1828343--1828487	33	4.4	33	85	0	173	28	36	1	33	1.66
1829255--1829283	15	1.9	15	100	0	58	34	0	20	44	1.52
1832707--1832747	12	3.4	12	100	0	82	48	0	51	0	1.00
1833847--1834509	137	4.8	138	82	6	722	44	14	12	28	1.82
1835392--1835444	21	2.5	21	87	0	79	18	26	18	35	1.95
1835434--1835580	20	7.3	20	84	3	172	36	19	19	23	1.95
1835544--1835590	20	2.3	20	88	0	67	34	19	21	25	1.96
1835434--1835601	60	2.8	59	78	11	173	35	20	19	24	1.95
1836436--1836488	24	2.2	24	89	0	79	22	18	18	39	1.92
1838872--1838987	20	5.7	20	85	2	160	35	24	21	18	1.96
1838871--1838985	60	1.9	62	92	3	198	35	23	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839050--1839146	33	2.9	34	89	3	142	13	23	20	42	1.88
1839248--1839281	14	2.4	14	90	0	50	47	20	0	32	1.51
1840594--1840686	42	2.2	42	80	3	107	22	17	39	20	1.92
1841164--1841212	20	2.5	20	86	0	71	34	24	20	20	1.96
1841236--1841338	54	1.9	54	89	0	161	19	20	19	40	1.91
1841261--1841338	20	4.2	20	71	18	78	23	20	19	37	1.95
1843216--1843255	20	2.0	20	95	0	71	55	17	15	12	1.70
1843221--1843285	20	3.2	20	86	0	76	43	21	16	18	1.88
1843331--1843377	20	2.3	20	88	0	67	21	19	23	36	1.95
1843708--1843769	18	3.0	22	69	26	62	17	16	38	27	1.91
1843966--1844079	20	5.7	20	81	2	147	21	19	19	39	1.93
1844076--1844121	21	2.2	21	88	0	65	36	17	28	17	1.92
1850010--1850495	81	6.0	81	88	1	724	28	22	11	37	1.89
1850447--1850632	68	2.7	68	91	1	293	27	24	15	32	1.95
1850853--1851003	55	2.7	55	86	3	196	31	21	11	35	1.89
1851333--1851558	95	2.4	95	84	1	265	25	22	15	36	1.93
1855237--1855372	65	2.1	64	89	4	202	28	20	23	27	1.99
1856057--1856105	19	2.6	19	93	0	80	57	24	0	18	1.41
1858043--1858186	23	6.7	21	76	11	89	27	19	26	27	1.99
1858064--1858167	44	2.3	44	85	3	136	25	22	25	26	2.00
1858068--1858167	23	4.4	23	79	5	123	27	23	24	26	2.00
1862388--1862430	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1862517--1863049	244	2.2	243	88	1	771	27	22	12	37	1.91
1862517--1863045	81	6.5	81	88	2	749	27	22	12	37	1.90
1862998--1863185	68	2.8	68	89	0	277	29	25	13	31	1.94
1863404--1863539	55	2.5	55	89	1	193	31	21	12	34	1.91
1863882--1864102	95	2.3	95	84	3	266	23	21	17	37	1.94
1867332--1867512	86	2.1	84	83	6	231	36	13	17	32	1.89
1867570--1867673	41	2.5	42	81	9	115	32	19	20	27	1.96
1870094--1870442	173	2.0	175	98	1	684	22	20	15	41	1.90
1870634--1870705	20	3.5	20	98	1	135	22	5	23	48	1.71
1871007--1871088	42	2.0	42	85	4	112	39	18	15	26	1.91
1880180--1880239	25	2.3	26	75	11	70	33	16	3	46	1.64
1884602--1884647	21	2.2	21	96	0	83	32	28	28	10	1.91
1885682--1885873	64	3.1	63	81	11	209	21	19	22	36	1.95
1885700--1885873	60	2.8	62	80	6	183	21	18	23	35	1.96
1886727--1886976	87	2.9	87	96	0	455	42	10	15	32	1.80
1890479--1890721	120	2.0	120	95	0	441	38	16	13	32	1.87
1890314--1890908	303	2.0	303	96	0	1109	34	16	14	34	1.90
1890599--1891187	183	3.2	183	94	1	1029	33	16	14	34	1.90
1892399--1892425	3	9.0	3	100	0	54	33	33	0	33	1.58
1893888--1894627	198	3.8	200	84	8	1005	30	18	15	35	1.92
1894216--1894584	179	2.1	179	97	0	695	30	19	14	34	1.92
1894857--1894905	19	2.6	19	96	0	89	55	10	2	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896074--1896138	33	2.0	32	87	3	94	23	47	0	29	1.52
1896171--1896235	21	3.1	21	93	0	103	16	30	10	41	1.83
1898624--1898684	20	3.1	19	80	13	70	19	14	11	54	1.71
1898417--1898879	179	2.6	178	87	4	625	28	16	13	41	1.86
1900114--1900438	88	3.5	96	82	10	431	29	30	12	28	1.93
1900396--1900462	24	2.8	24	88	0	107	29	34	11	23	1.91
1900995--1901024	15	2.0	15	100	0	60	20	13	20	46	1.83
1901645--1901818	45	3.7	45	77	13	186	43	18	17	19	1.88
1901638--1901751	54	2.1	53	79	4	120	43	20	17	18	1.88
1901706--1901816	15	7.4	15	73	11	102	45	17	18	18	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11