genome.fa.s8183.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2364390

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233952--233994	15	2.7	16	82	10	52	46	9	2	41	1.48
235221--235259	2	20.5	2	84	10	55	46	2	0	51	1.14
241581--241646	2	33.0	2	100	0	132	50	0	0	50	1.00
244726--244778	21	2.5	21	84	0	70	20	22	20	35	1.96
244787--244974	20	9.4	20	91	0	304	27	26	19	27	1.99
245787--245840	24	2.2	24	86	0	72	22	18	20	38	1.93
246026--246057	14	2.3	14	94	0	55	59	25	9	6	1.52
248093--248127	18	1.9	18	94	0	61	54	22	2	20	1.58
248339--248655	20	16.5	20	77	7	271	34	20	17	27	1.96
248379--248704	94	3.5	94	81	2	341	34	20	18	26	1.96
248399--248540	74	1.9	74	88	0	212	32	22	17	27	1.96
248304--248560	134	1.9	134	92	0	433	33	21	17	27	1.95
248661--248704	20	2.2	20	88	4	63	31	22	20	25	1.98
248694--248751	20	2.9	20	78	0	71	13	17	24	44	1.85
248855--248909	29	1.9	28	85	3	74	47	18	0	34	1.49
248850--248911	14	4.3	14	79	6	70	46	16	0	37	1.47
250312--250418	21	5.1	21	77	3	108	21	18	38	21	1.94
250312--250423	42	2.7	42	77	5	120	22	18	38	20	1.93
250909--250955	20	2.5	18	89	6	67	34	27	19	19	1.96
252928--252968	20	2.0	20	95	0	73	58	19	12	9	1.61
252935--253004	20	3.5	20	88	0	86	44	24	17	14	1.85
253405--253446	22	2.0	22	90	4	68	19	19	40	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255133--255174	22	1.9	22	90	0	66	50	7	0	42	1.30
255417--255636	110	2.0	110	96	0	404	39	13	7	40	1.73
255817--255998	95	1.9	95	82	2	231	39	22	7	30	1.81
255827--256024	95	2.1	96	78	1	211	41	21	6	30	1.78
258709--258762	18	3.3	18	63	36	50	48	7	14	29	1.71
258706--258774	30	2.3	30	97	0	129	42	5	17	34	1.73
264724--264760	2	18.5	2	94	0	65	54	0	0	45	1.00
268589--268619	15	2.1	15	100	0	62	35	6	12	45	1.68
269764--269927	64	2.5	65	85	4	215	25	15	26	32	1.96
269825--269875	19	2.7	19	85	8	70	25	15	35	23	1.94
269889--269928	21	1.9	21	94	0	71	22	15	30	32	1.94
272013--272050	18	2.1	19	85	5	51	31	0	13	55	1.38
278305--278409	45	2.3	46	85	4	133	28	16	20	35	1.94
278395--278427	17	1.9	17	93	0	57	21	18	36	24	1.95
280585--280680	17	5.4	17	75	24	67	59	0	0	40	0.97
280546--280625	21	3.6	23	70	25	64	56	0	1	42	1.07
280596--280676	29	2.9	28	76	5	85	58	0	0	41	0.98
280612--280672	20	2.8	20	87	9	77	59	0	0	40	0.98
287935--287973	18	2.2	18	85	0	51	41	15	0	43	1.46
290761--290802	22	2.0	21	90	4	66	33	0	14	52	1.42
295934--295976	17	2.5	17	85	14	54	51	0	0	48	1.00
297076--297118	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297890--297929	21	1.9	21	85	10	55	25	25	20	30	1.99
299469--299557	24	3.7	24	72	8	63	52	17	10	19	1.72
300498--300551	27	2.0	27	96	0	99	46	16	0	37	1.48
301429--301468	18	2.2	18	100	0	80	35	17	5	42	1.71
307898--307995	6	16.3	6	98	0	178	0	18	47	33	1.49
309750--309805	22	2.5	22	77	13	60	50	0	1	48	1.11
312362--312426	30	2.3	28	87	10	89	23	6	10	60	1.52
312417--312491	23	3.2	23	75	1	60	29	13	10	46	1.76
318295--318369	37	2.0	37	100	0	150	30	26	8	34	1.85
320645--320688	4	11.0	4	90	0	61	47	20	2	29	1.62
325200--325315	53	2.2	53	77	9	121	37	12	9	39	1.76
326852--326912	30	2.0	30	96	0	113	37	14	16	31	1.89
327400--327439	2	20.0	2	94	0	71	47	0	2	50	1.14
327678--327740	22	3.0	21	79	11	74	25	17	25	31	1.97
331963--331999	20	1.9	19	89	10	58	45	10	24	18	1.81
343229--343287	31	1.9	31	96	0	109	42	6	6	44	1.57
343320--344049	32	25.7	32	70	22	437	53	12	0	34	1.40
343303--343460	86	1.8	86	95	0	289	52	12	0	34	1.40
343352--343783	54	7.9	54	72	16	327	53	12	0	33	1.41
343386--343434	22	2.2	22	85	3	62	55	12	0	32	1.37
343497--343560	26	2.5	26	92	0	110	56	17	1	25	1.50
343406--343820	196	2.1	196	86	4	586	53	12	0	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343634--343676	22	2.0	22	95	0	77	48	13	0	37	1.43
343758--343811	14	3.6	14	77	18	63	57	3	0	38	1.17
343800--343842	22	2.0	22	95	0	77	51	6	0	41	1.29
343802--343850	22	2.2	22	85	3	62	55	8	0	36	1.30
343736--343869	18	8.1	15	66	27	67	53	8	0	38	1.31
343303--344149	340	2.5	331	87	6	1154	52	12	0	34	1.40
343602--344048	54	8.0	54	71	12	310	52	12	0	35	1.39
343976--344024	22	2.2	22	85	3	62	55	12	0	32	1.37
344098--344179	15	5.5	15	91	1	130	50	0	0	50	1.00
344889--344914	2	13.0	2	100	0	52	50	0	0	50	1.00
345337--345413	21	3.7	21	78	3	93	19	18	28	33	1.95
345333--345410	41	1.9	41	97	0	147	19	19	26	34	1.95
345530--345566	5	6.7	6	90	9	53	29	51	18	0	1.47
346193--346264	22	3.4	21	69	11	58	38	23	18	19	1.93
346175--346263	41	2.2	41	91	0	142	39	22	17	20	1.92
346234--346367	20	6.5	21	74	8	82	36	26	19	17	1.94
346277--346586	20	15.6	20	71	12	219	38	23	21	16	1.93
346257--346394	61	2.3	61	98	0	267	36	25	20	18	1.95
346411--346481	22	3.4	21	69	11	65	39	23	16	19	1.92
346393--346502	41	2.7	41	90	4	168	39	22	19	19	1.93
346471--346604	61	2.2	61	97	2	252	37	24	20	17	1.94
346514--346628	21	5.6	20	83	2	104	33	25	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346216--346566	177	2.0	177	82	3	429	38	23	19	18	1.93
346797--346862	22	2.9	22	82	8	62	34	3	3	59	1.28
348854--348909	17	3.4	17	73	14	62	42	0	0	57	0.99
348844--348916	33	2.3	31	86	9	94	38	0	0	61	0.96
348924--348962	21	1.9	21	85	15	55	30	2	7	58	1.39
350645--350729	42	2.0	42	84	2	109	23	29	21	25	1.99
350727--350791	21	3.2	20	78	8	67	23	29	21	26	1.99
351331--351368	19	2.0	19	89	0	58	42	5	10	42	1.62
351896--352350	117	3.9	117	88	1	662	33	20	23	22	1.97
355831--355882	23	2.3	23	82	0	59	21	26	25	26	1.99
360927--360995	23	3.0	23	82	0	93	18	24	26	30	1.98
362053--362095	21	2.0	21	81	0	50	27	27	25	18	1.98
362185--362216	13	2.5	13	100	0	64	31	6	15	46	1.71
362754--362821	23	3.0	23	93	0	109	20	26	26	26	1.99
366303--366345	20	2.2	20	86	0	59	46	0	0	53	1.00
366315--366352	20	2.0	20	84	5	51	52	0	0	47	1.00
367397--368043	246	2.6	250	78	8	645	32	18	12	36	1.88
375199--375240	21	2.0	21	95	0	75	30	14	7	47	1.71
375235--375338	33	3.2	33	94	1	174	30	7	16	45	1.75
375500--375531	16	2.0	17	88	11	50	50	21	15	12	1.77
376352--376439	42	2.1	43	86	2	124	20	1	22	55	1.50
383231--383278	15	3.2	15	96	0	87	6	16	68	8	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391407--391450	22	2.0	23	86	4	63	56	0	2	40	1.11
394167--394234	29	2.3	29	84	0	82	42	25	7	25	1.80
394187--394292	29	3.7	29	87	2	124	44	23	8	23	1.81
394300--394334	18	2.0	18	88	5	54	14	22	45	17	1.84
401589--401669	29	2.8	29	92	1	128	44	20	11	23	1.84
402096--402126	16	1.9	16	93	0	53	12	3	3	80	0.95
403513--403693	63	2.9	63	92	0	290	25	18	14	40	1.90
408173--408292	32	3.7	31	83	7	141	32	15	20	30	1.94
408819--409040	84	2.6	84	80	4	223	34	25	17	22	1.95
409249--410088	375	2.2	365	87	6	1150	31	30	15	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11