genome.fa.s8183.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2364390

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409249--410131	182	4.7	191	86	5	1169	31	29	15	22	1.95
409714--410131	193	2.2	193	90	0	649	31	29	15	23	1.95
421138--421209	33	2.1	35	82	12	87	48	1	4	45	1.30
421354--421391	20	1.9	20	88	0	58	21	26	10	42	1.85
429061--429143	20	4.1	20	74	10	69	15	26	34	22	1.94
442513--442619	42	2.6	41	77	1	106	26	22	21	29	1.99
442395--442797	214	1.9	214	94	0	707	34	15	18	31	1.91
442835--442916	42	2.0	42	95	0	146	26	19	21	31	1.97
442962--443048	42	2.1	41	85	8	115	24	16	25	34	1.95
448801--448845	23	2.0	23	86	0	63	28	8	15	46	1.76
448811--448855	23	2.0	23	90	0	72	28	8	17	44	1.79
449121--449165	12	3.8	12	82	11	56	40	8	20	31	1.83
463190--463220	2	15.5	2	100	0	62	48	0	0	51	1.00
464582--464651	11	6.0	11	72	18	54	28	4	4	62	1.33
464780--465046	140	1.9	139	81	9	319	39	8	7	43	1.64
469822--469875	2	27.0	2	100	0	108	50	0	0	50	1.00
470061--470094	18	1.9	17	94	5	59	79	0	20	0	0.73
472336--472720	83	4.6	83	87	1	540	26	13	21	37	1.91
472336--472720	166	2.3	166	90	1	603	26	13	21	37	1.91
473975--474146	74	2.3	75	85	4	222	34	16	20	29	1.94
475022--475176	54	2.9	53	87	3	220	38	16	21	23	1.93
476232--476646	76	5.5	76	97	0	776	22	19	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476777--476815	15	2.7	15	88	4	53	41	5	0	53	1.23
478959--479019	21	3.2	21	65	29	64	31	4	21	42	1.74
478951--479069	35	3.3	37	88	8	174	31	5	19	43	1.72
479926--480002	36	2.1	36	97	0	145	23	22	10	44	1.83
480720--480753	17	2.0	17	100	0	68	17	5	29	47	1.71
490322--490557	120	2.0	114	83	6	294	27	14	14	43	1.84
499807--499859	22	2.4	22	100	0	106	49	0	3	47	1.19
500432--500470	6	6.5	6	93	0	51	23	0	0	76	0.78
500432--500470	12	3.2	12	88	0	60	23	0	0	76	0.78
500431--500466	6	6.0	6	93	0	54	22	0	0	77	0.76
508183--508220	19	2.0	19	100	0	76	21	15	36	26	1.93
508188--508229	19	2.2	19	83	8	50	23	19	30	26	1.98
513868--513914	18	2.7	18	87	6	62	68	0	2	29	1.02
516293--516327	16	2.2	16	90	5	54	37	40	8	14	1.76
517346--517411	34	2.0	33	94	5	116	53	18	3	25	1.59
519359--519416	29	2.0	29	93	0	98	31	10	10	48	1.71
526242--526297	16	3.5	16	79	11	53	58	1	0	39	1.08
533473--533559	35	2.5	34	80	12	97	55	10	8	26	1.61
534124--534158	18	1.9	18	100	0	70	25	22	22	28	1.99
535671--535892	111	2.0	111	96	0	408	45	10	8	36	1.68
537799--537854	27	2.1	27	86	3	78	25	7	14	53	1.66
538311--538343	12	2.8	12	90	4	50	30	18	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540736--540828	42	2.2	42	98	0	177	12	21	36	29	1.91
546427--546625	21	9.8	20	72	6	114	38	24	17	20	1.93
546427--546644	20	10.8	20	69	10	113	38	25	16	19	1.92
546508--546619	41	2.7	41	91	6	174	38	21	16	23	1.93
546592--546762	20	8.6	20	86	2	218	33	26	20	19	1.97
547165--547235	33	2.2	33	89	0	106	11	23	16	47	1.79
547315--547420	21	5.6	20	70	16	91	45	18	25	10	1.81
547313--547391	21	3.8	21	79	12	92	45	16	26	11	1.81
547308--547424	41	3.1	38	79	14	136	46	17	26	10	1.80
547378--547431	14	3.5	14	73	22	54	42	24	25	7	1.80
547367--547436	33	2.1	33	97	0	131	47	20	25	7	1.75
547373--547447	33	2.3	33	92	0	123	46	24	22	6	1.75
547443--547540	19	5.7	19	70	22	81	10	24	22	42	1.84
547465--547554	14	5.7	14	74	23	81	8	25	23	42	1.83
547448--547562	33	3.5	33	95	0	212	9	24	20	45	1.81
549253--549447	93	2.1	92	96	1	365	23	12	18	46	1.82
549489--549532	20	2.2	20	88	4	63	45	29	13	11	1.79
549545--549643	19	5.4	19	76	12	100	9	16	28	46	1.77
549528--549606	33	2.4	33	91	0	122	8	20	25	45	1.79
551459--551496	12	3.2	12	85	7	60	21	0	15	63	1.31
551564--551599	14	2.6	14	95	0	63	33	0	22	44	1.53
551706--551822	19	6.4	19	87	10	181	46	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551706--551822	33	3.2	36	84	13	159	46	17	22	14	1.84
551724--551840	53	2.2	53	96	1	218	44	18	23	12	1.85
551847--552103	33	7.5	33	78	14	261	13	21	18	46	1.83
551869--552103	19	13.4	19	79	16	285	13	20	18	46	1.83
551888--552075	52	3.6	52	99	0	367	13	21	17	46	1.83
551880--552103	52	4.3	51	90	6	326	13	20	18	46	1.83
554383--554407	12	2.1	12	100	0	50	0	28	0	72	0.86
554582--554628	24	2.0	24	87	8	69	38	21	14	25	1.92
555308--555557	20	12.5	20	86	1	268	20	17	24	37	1.93
555544--555626	21	4.0	21	73	6	78	25	16	24	33	1.96
555524--555622	42	2.4	43	77	11	100	21	18	23	37	1.94
559159--559271	36	3.1	36	79	9	115	24	23	18	32	1.97
565239--565319	5	15.6	5	73	16	67	20	6	1	71	1.14
565258--565299	16	2.7	15	85	3	57	19	7	0	73	1.05
565239--565319	21	3.6	21	83	8	90	20	6	1	71	1.14
571760--572118	184	2.0	183	94	2	641	46	9	2	40	1.50
572206--572265	30	2.0	30	86	3	84	38	6	21	33	1.80
573511--573539	2	14.5	2	100	0	58	48	0	0	51	1.00
573539--573565	2	13.5	2	100	0	54	0	0	48	51	1.00
586981--587185	51	4.0	51	83	6	238	28	23	16	31	1.96
586996--587185	102	1.9	102	89	2	301	27	24	16	31	1.97
587171--587413	54	4.5	54	96	0	423	18	24	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587790--587913	37	3.4	37	84	6	153	25	19	21	33	1.97
597809--597882	21	3.5	21	92	0	112	29	28	21	20	1.98
597891--597985	21	4.6	21	81	5	122	20	22	25	32	1.97
597937--598002	19	3.3	19	67	12	51	21	19	21	37	1.94
597916--598013	40	2.4	40	87	3	151	22	20	22	34	1.97
597897--598019	61	2.0	60	81	6	140	22	20	22	34	1.97
598576--598614	6	6.5	6	100	0	78	0	15	51	33	1.44
598711--598822	21	5.3	21	68	16	88	38	23	17	20	1.93
598707--598889	42	4.3	42	90	2	278	35	25	18	20	1.95
598732--598914	21	8.6	21	69	17	110	34	26	19	19	1.96
599099--599180	31	2.6	31	84	0	110	47	8	4	39	1.56
603619--603665	24	2.0	24	91	0	76	40	0	19	40	1.51
605202--605361	82	2.0	82	94	0	284	20	26	18	35	1.95
608943--608980	18	2.2	18	90	4	60	13	55	0	31	1.38
609718--609753	15	2.4	15	95	0	63	50	19	11	19	1.77
617338--617399	13	4.8	13	83	0	70	29	19	17	33	1.95
617377--617542	85	2.0	85	82	9	205	31	19	18	31	1.95
618797--619003	75	2.7	76	82	4	249	20	23	31	24	1.98
619608--619651	17	2.6	17	85	7	63	56	29	0	13	1.38
619603--619653	9	6.2	8	78	17	52	58	27	0	13	1.36
621588--621627	21	1.9	21	84	0	53	10	27	37	25	1.88
621608--621670	20	2.9	21	79	9	65	15	25	34	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625289--625338	21	2.4	21	100	0	100	26	16	10	48	1.77
625283--625338	21	2.7	20	94	2	85	26	14	8	50	1.72
625289--625347	21	2.8	21	89	5	66	23	16	10	49	1.77
627400--627604	75	2.7	75	84	4	252	21	24	30	23	1.99
640662--640696	17	2.0	17	94	5	61	17	48	22	11	1.79
640746--640904	29	5.5	28	72	14	83	38	2	11	46	1.54
640835--640887	17	3.4	17	65	20	51	28	5	15	50	1.66
640823--640905	30	2.8	29	89	5	121	31	3	12	53	1.55
645094--645127	17	1.9	18	94	5	61	23	0	29	47	1.52
645090--645136	18	2.7	17	86	3	67	17	0	27	55	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11