genome.fa.s8183.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2364390

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908322--908349	13	2.2	13	100	0	56	64	0	0	35	0.94
909773--909876	45	2.3	45	86	5	138	28	22	19	29	1.98
909846--909894	19	2.6	19	84	9	57	24	28	20	26	1.99
910687--910724	17	2.2	17	100	0	76	13	34	23	28	1.92
917261--917304	21	2.1	21	82	0	52	9	38	15	36	1.80
918326--918433	46	2.4	46	81	13	134	33	20	18	27	1.96
918371--918495	64	1.9	65	88	4	191	28	23	20	27	1.99
918467--918515	19	2.6	19	84	9	57	24	28	20	26	1.99
919556--919591	2	18.0	2	100	0	72	50	0	0	50	1.00
921965--921998	16	2.1	17	88	5	52	20	2	5	70	1.21
924423--924457	2	17.5	2	100	0	70	48	0	0	51	1.00
927086--927175	2	45.0	2	100	0	180	50	0	0	50	1.00
928059--928320	45	5.8	45	85	2	330	29	20	9	40	1.84
928062--928319	134	1.9	135	88	2	394	29	20	10	40	1.85
928072--928358	134	2.1	135	85	3	373	29	21	10	37	1.88
928800--928981	100	1.8	100	85	2	258	28	25	14	31	1.95
932066--932134	35	2.0	35	85	5	95	33	5	8	52	1.56
932669--932714	24	1.9	24	95	0	83	15	6	32	45	1.71
948312--948341	13	2.3	13	94	0	51	36	0	16	46	1.47
948960--948994	17	2.1	17	89	10	54	17	11	8	62	1.52
949904--950382	171	2.8	171	91	0	735	33	20	12	32	1.91
951970--952110	31	4.5	31	94	0	246	19	19	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953244--953276	16	2.0	17	88	5	50	48	0	6	45	1.27
953654--953698	25	1.9	22	86	13	63	46	0	0	53	1.00
961156--961235	40	2.0	40	95	0	142	36	8	18	36	1.82
973803--973845	21	2.0	23	86	9	63	13	23	44	18	1.86
979686--979782	31	3.2	31	63	5	72	37	12	10	40	1.77
979688--979834	60	2.4	61	92	3	235	37	12	12	38	1.80
983992--984263	4	68.0	4	99	0	535	50	24	0	25	1.50
985931--986023	47	2.0	48	87	6	136	46	4	21	27	1.70
989500--989525	13	2.0	13	100	0	52	30	7	0	61	1.24
989819--989857	19	2.1	19	85	9	53	58	5	0	35	1.20
993045--993070	7	3.7	7	100	0	52	0	0	11	88	0.52
993590--993625	4	8.8	4	87	6	54	2	2	22	72	1.11
994957--994995	20	2.0	20	89	0	60	43	12	20	23	1.86
1008273--1008297	3	8.3	3	100	0	50	32	0	0	68	0.90
1013539--1013618	29	2.8	29	84	0	106	50	2	5	42	1.37
1013545--1013633	29	3.0	28	80	4	70	50	4	7	37	1.52
1014202--1014240	20	1.9	21	94	5	71	35	7	15	41	1.76
1018914--1018955	21	2.0	20	86	4	57	40	7	14	38	1.73
1019889--1019934	23	2.0	24	86	4	67	54	2	10	32	1.47
1020497--1020524	2	14.0	2	100	0	56	50	0	0	50	1.00
1023926--1023950	5	5.0	5	100	0	50	40	20	0	40	1.52
1026244--1026353	34	3.2	34	80	12	102	35	0	3	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028078--1028125	21	2.3	21	85	0	60	25	39	12	22	1.89
1028129--1028222	21	4.5	21	89	5	136	19	34	27	19	1.96
1028742--1028848	34	3.2	33	82	7	126	54	4	4	36	1.42
1029470--1029841	128	2.9	127	94	2	656	32	18	24	24	1.97
1029912--1029952	8	5.2	8	82	5	57	36	29	0	34	1.58
1037924--1037959	16	2.3	15	90	4	54	27	8	0	63	1.23
1045192--1045978	392	2.0	392	99	0	1556	27	13	19	40	1.88
1049161--1049213	21	2.5	21	84	0	70	22	24	16	35	1.95
1049206--1049354	20	7.5	20	86	4	212	40	18	20	20	1.91
1049551--1049615	22	3.0	22	88	0	94	26	40	12	21	1.88
1049952--1050041	20	4.6	20	81	5	94	14	14	22	48	1.79
1051909--1052080	20	9.3	20	76	17	131	42	21	18	18	1.89
1052131--1052197	20	3.3	20	89	0	98	20	17	22	38	1.93
1052681--1052785	21	5.0	21	74	3	95	20	37	19	22	1.95
1052678--1052788	42	2.6	42	78	5	118	20	37	18	22	1.94
1054169--1054204	14	2.6	14	90	0	54	30	0	22	47	1.52
1054310--1054405	33	2.8	33	90	3	138	43	19	23	12	1.85
1054421--1054515	33	2.8	34	87	3	129	14	21	21	43	1.88
1054487--1054535	20	2.5	20	93	6	82	18	20	26	34	1.95
1056948--1057001	24	2.2	24	93	0	90	40	20	18	20	1.91
1057843--1057889	20	2.3	20	100	0	94	23	19	25	31	1.98
1057853--1057933	20	4.1	20	88	6	85	20	20	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057881--1057939	20	3.0	20	95	5	102	16	20	23	38	1.92
1062872--1062896	2	12.5	2	100	0	50	48	0	0	52	1.00
1069442--1069497	15	3.7	15	75	15	53	62	0	0	37	0.95
1069441--1069498	22	2.6	22	76	13	64	60	0	0	39	0.97
1073462--1073519	20	2.7	20	86	10	71	22	22	22	32	1.98
1078520--1078572	21	2.5	21	72	6	54	20	22	18	37	1.94
1078602--1078716	20	5.7	19	79	9	95	34	25	16	23	1.95
1078599--1078676	41	1.9	41	91	0	129	37	25	16	20	1.93
1078886--1078933	22	2.3	21	85	7	62	22	39	12	25	1.89
1079180--1079238	20	3.0	20	87	0	73	15	18	22	44	1.87
1080557--1080604	18	2.7	18	93	0	87	27	45	12	14	1.81
1081138--1081204	20	3.4	20	81	2	73	38	23	22	14	1.92
1081138--1081235	20	5.3	19	75	15	71	42	23	20	13	1.87
1081310--1081370	20	3.1	20	92	2	97	16	26	24	32	1.96
1081718--1081778	21	3.0	20	73	7	68	22	42	13	21	1.87
1081718--1081796	42	1.9	41	89	2	122	22	43	13	20	1.87
1083213--1083251	14	2.8	14	84	0	51	35	0	17	46	1.49
1083391--1083436	19	2.4	19	100	0	92	47	17	19	15	1.82
1083402--1083443	19	2.2	19	86	0	57	54	14	19	11	1.70
1083474--1083516	20	2.2	20	91	0	68	16	20	20	41	1.90
1084069--1084156	20	4.4	20	92	2	133	28	20	27	23	1.99
1084187--1084239	21	2.5	22	81	6	74	33	18	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084274--1084319	19	2.3	20	81	7	58	26	17	28	28	1.98
1087869--1087949	40	2.1	39	80	11	96	39	0	0	60	0.97
1088169--1088195	5	5.4	5	100	0	54	40	18	40	0	1.51
1088950--1089062	60	1.9	60	87	3	165	32	13	15	38	1.87
1092019--1092224	87	2.4	86	81	2	241	29	15	21	33	1.94
1093382--1093429	14	3.6	14	72	11	55	14	14	18	52	1.75
1093386--1093449	24	2.5	26	85	5	78	17	12	17	53	1.73
1093623--1093666	14	3.2	14	81	18	65	6	11	22	59	1.55
1093619--1093659	13	3.1	13	80	19	57	7	9	21	60	1.52
1106503--1106544	18	2.4	17	84	7	57	57	2	0	40	1.12
1122723--1122750	2	14.0	2	100	0	56	50	0	0	50	1.00
1126816--1126840	12	2.1	12	100	0	50	8	36	16	40	1.77
1127752--1127780	15	1.9	15	100	0	58	20	10	20	48	1.79
1129518--1129599	29	2.8	29	92	1	128	34	14	8	42	1.76
1134276--1134357	29	2.8	29	94	1	137	32	14	9	42	1.79
1136307--1136336	2	15.5	2	93	6	53	53	0	0	46	1.00
1138041--1138090	25	2.0	25	100	0	100	28	28	16	28	1.97
1145443--1145738	80	3.7	80	93	0	477	21	20	26	31	1.98
1147395--1147428	17	2.0	17	94	0	59	44	17	5	32	1.73
1150656--1150686	2	15.5	2	93	0	53	48	0	0	51	1.00
1154420--1154482	2	34.5	2	77	17	57	55	0	0	44	0.99
1154382--1154466	33	2.5	33	94	3	143	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154382--1154468	35	2.5	35	89	10	135	59	0	0	40	0.97
1155905--1156171	108	2.5	108	83	1	311	40	9	11	38	1.74
1156899--1157199	100	3.0	98	83	6	347	33	12	11	41	1.80
1156940--1157199	98	2.6	100	84	5	330	32	11	12	43	1.79
1157555--1157601	19	2.4	20	89	3	69	27	31	17	23	1.96
1157615--1157702	20	4.3	20	76	2	95	34	23	17	25	1.96
1157696--1157870	20	8.4	20	76	9	170	50	23	10	16	1.75
1157676--1157802	40	3.2	39	80	8	132	44	25	13	17	1.85
1157771--1157869	48	2.1	48	98	0	189	55	20	8	16	1.66
1158395--1158428	14	2.4	14	85	0	50	50	26	14	8	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11