genome.fa.s8183.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2364390

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158441--1158500	20	3.0	20	92	7	97	10	16	23	50	1.75
1158444--1158514	20	3.5	20	84	0	61	14	14	21	50	1.77
1160666--1160734	21	3.3	20	74	8	66	26	36	20	17	1.94
1160636--1160732	42	2.3	41	82	7	113	24	35	17	22	1.95
1162075--1162250	66	2.6	65	89	8	257	27	2	17	52	1.56
1162304--1162344	19	2.2	19	95	0	73	41	26	17	14	1.88
1162711--1162746	18	2.0	18	100	0	72	16	0	27	55	1.42
1164994--1165067	24	3.1	24	94	0	130	37	20	20	21	1.94
1164994--1165085	24	3.8	24	88	0	85	38	19	18	23	1.93
1165985--1166033	18	2.7	17	78	12	53	28	14	22	34	1.93
1166024--1166071	19	2.5	19	83	10	62	29	12	22	35	1.91
1166005--1166174	20	8.6	20	80	7	102	24	14	23	38	1.92
1166062--1166273	20	10.6	20	84	8	254	18	14	24	42	1.87
1166062--1166273	60	3.5	59	87	3	284	18	14	24	42	1.87
1166477--1166624	70	2.1	72	81	7	167	33	14	8	44	1.74
1167275--1167454	71	2.5	70	91	1	288	38	23	5	32	1.78
1175316--1175356	10	4.1	10	84	12	57	31	29	0	39	1.57
1175482--1175814	111	3.0	111	96	0	603	36	7	10	45	1.68
1177703--1177749	20	2.4	19	82	3	58	78	2	12	6	1.02
1177965--1177997	2	16.5	2	100	0	66	51	0	0	48	1.00
1178014--1178061	24	2.0	24	83	0	60	62	0	6	31	1.20
1178635--1178706	35	2.1	35	94	0	126	27	20	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179451--1179662	106	2.0	106	92	1	354	21	18	24	34	1.96
1180098--1180202	21	5.4	20	69	21	80	40	12	22	24	1.89
1180078--1180232	36	4.2	35	80	11	166	37	13	21	27	1.91
1180094--1180244	76	2.0	77	88	3	225	41	12	19	26	1.87
1181707--1181768	28	2.2	29	83	13	76	1	9	8	80	0.97
1181707--1181768	17	3.3	17	77	20	61	1	9	8	80	0.97
1181720--1181792	16	4.7	15	73	20	53	0	12	8	79	0.93
1181707--1181792	31	2.8	30	78	13	79	1	11	8	79	1.00
1182181--1182209	15	1.9	15	100	0	58	34	17	13	34	1.89
1183620--1183653	17	2.1	16	88	5	50	76	0	8	14	1.01
1187469--1187537	23	2.8	24	76	22	72	69	1	17	11	1.25
1194386--1194435	24	2.1	24	85	7	66	60	12	2	26	1.43
1198117--1198157	15	2.6	16	81	14	50	78	0	7	14	0.96
1199039--1199135	37	2.6	37	86	0	140	29	14	16	39	1.88
1199212--1199269	27	2.1	27	90	0	89	20	36	17	25	1.94
1199578--1199627	3	16.7	3	87	0	55	32	24	36	8	1.84
1199581--1199630	12	4.2	12	78	0	64	32	22	36	10	1.87
1213503--1213585	30	2.8	30	85	1	105	32	30	20	16	1.95
1213560--1213624	31	2.1	31	85	5	87	35	23	20	21	1.96
1214830--1214887	20	2.6	22	86	10	75	25	22	22	29	1.99
1216519--1216621	31	3.4	30	78	17	113	40	4	6	47	1.51
1216543--1216618	30	2.5	30	91	2	116	39	5	7	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1216542--1216854	14	21.4	14	69	20	171	40	4	6	48	1.49
1216574--1216666	45	2.1	44	93	2	159	40	5	6	47	1.52
1216618--1216696	31	2.5	31	93	0	131	39	5	6	49	1.50
1216653--1216741	45	2.0	45	90	0	142	35	5	7	50	1.55
1216542--1216772	31	7.7	29	73	17	127	38	5	6	48	1.54
1220859--1221332	84	5.5	86	87	4	681	17	24	23	33	1.96
1220859--1221301	43	10.4	43	91	3	664	17	25	24	33	1.96
1226288--1226430	31	4.6	31	91	0	214	40	23	16	18	1.91
1227411--1227455	21	2.1	21	87	0	63	15	24	28	31	1.96
1230568--1230723	31	5.0	31	93	1	251	38	22	18	20	1.93
1231705--1231749	21	2.1	21	87	0	63	15	24	28	31	1.96
1236195--1236228	16	2.1	16	88	0	50	50	0	2	47	1.16
1236765--1237012	130	1.9	130	94	0	433	35	12	15	36	1.85
1237399--1237472	35	2.1	35	92	0	121	35	1	22	40	1.63
1239877--1240044	60	2.8	61	78	11	166	41	5	20	32	1.75
1239951--1240044	31	3.0	32	75	16	90	44	4	15	35	1.67
1254682--1254768	31	2.9	29	83	6	102	24	12	6	56	1.60
1260419--1260555	30	4.7	30	68	20	92	14	33	27	24	1.94
1265109--1265210	46	2.3	43	91	5	159	28	10	14	46	1.78
1265178--1265250	34	2.1	35	92	7	121	26	8	16	49	1.73
1265713--1265791	20	4.0	20	93	0	122	24	25	20	30	1.98
1266296--1266354	14	3.8	16	72	26	54	13	23	18	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267926--1268017	42	2.2	42	86	1	132	21	15	41	21	1.90
1267909--1268006	21	4.8	20	70	10	72	21	18	37	22	1.94
1268355--1268407	20	2.7	20	81	0	61	37	28	9	24	1.86
1268361--1268430	20	3.5	20	82	0	68	35	28	18	17	1.93
1268381--1268434	20	2.7	20	88	0	81	37	25	24	12	1.91
1268420--1268479	19	3.2	18	81	9	75	46	25	18	10	1.79
1268483--1268565	19	4.3	19	78	7	87	13	19	21	45	1.84
1268478--1268554	38	2.0	38	87	5	111	15	20	18	45	1.85
1269098--1269145	18	2.7	18	93	0	87	14	12	45	27	1.81
1270467--1270508	20	2.1	20	86	0	57	50	21	16	11	1.77
1270476--1270524	20	2.5	20	89	0	71	36	26	18	18	1.94
1270801--1270844	22	2.0	22	95	0	79	18	15	45	20	1.85
1271038--1271104	20	3.3	20	74	12	73	22	17	25	34	1.96
1271010--1271107	41	2.4	41	92	0	160	22	17	22	37	1.94
1271045--1271107	20	3.0	22	72	13	78	19	17	23	39	1.92
1271038--1271125	41	2.1	41	85	4	115	22	19	22	35	1.96
1271093--1271144	20	2.5	21	87	3	70	21	23	17	38	1.93
1271141--1271186	21	2.2	20	85	11	65	36	19	28	15	1.92
1277644--1277793	73	2.1	73	96	0	273	44	8	8	38	1.65
1278287--1278327	16	2.6	16	92	0	64	34	14	9	41	1.79
1282036--1282065	10	3.0	10	90	0	51	20	13	0	66	1.24
1282036--1282083	10	4.2	12	84	10	50	27	10	0	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282026--1282081	20	2.8	19	69	26	53	28	10	0	60	1.30
1295241--1295284	22	2.0	22	82	8	54	54	0	18	27	1.44
1296907--1296940	15	2.2	16	89	5	52	52	0	0	47	1.00
1297116--1298141	379	2.7	379	94	1	1798	37	13	11	37	1.81
1297960--1298023	28	2.2	29	78	10	69	62	1	3	32	1.20
1299466--1299523	23	2.5	24	83	8	84	27	25	27	18	1.98
1310609--1310768	60	2.7	59	80	5	178	32	19	6	41	1.76
1310658--1310796	60	2.3	60	83	4	174	33	23	5	38	1.77
1311708--1311786	41	2.0	40	87	7	115	45	10	25	18	1.81
1313058--1313089	15	2.1	15	94	0	55	53	9	25	12	1.68
1314486--1314530	21	2.1	21	87	0	63	31	28	24	15	1.96
1314910--1315020	56	2.0	55	98	1	213	23	5	22	48	1.71
1315172--1315206	18	1.9	18	88	11	54	54	5	17	22	1.64
1316092--1316404	147	2.1	148	92	4	526	26	17	22	33	1.96
1316372--1316416	23	2.0	23	90	0	72	22	26	26	24	2.00
1318754--1318914	64	2.5	65	84	7	213	33	21	19	25	1.97
1319800--1319862	23	2.7	23	88	9	85	19	26	26	26	1.99
1334966--1335025	31	1.9	31	89	0	93	43	3	8	45	1.50
1335049--1335560	22	23.6	22	85	5	686	48	10	0	40	1.41
1335525--1335574	12	4.3	12	72	10	50	52	2	2	44	1.24
1335815--1335855	13	3.4	13	77	16	52	34	0	0	65	0.93
1335800--1335861	9	6.4	9	75	12	52	27	0	3	69	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1338933--1339002	36	1.9	36	94	5	124	40	15	14	30	1.87
1339467--1339593	43	3.0	43	88	1	184	35	9	18	36	1.84
1339671--1339716	6	7.5	6	82	4	56	19	19	10	50	1.77
1341748--1341891	72	2.0	72	93	2	245	25	22	18	34	1.96
1341969--1342008	14	2.9	14	85	14	57	80	0	20	0	0.72
1343183--1343342	54	3.0	53	86	1	214	36	15	21	26	1.93
1343712--1343774	22	2.9	22	82	0	81	34	12	11	41	1.79
1344420--1345038	217	2.9	217	91	3	970	31	16	20	30	1.95
1346582--1346704	24	5.3	24	84	5	137	26	15	18	39	1.91
1351457--1351517	20	2.9	20	82	7	68	19	26	32	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11