genome.fa.s8183.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2364390

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1591829--1591885	24	2.5	23	85	5	71	47	15	10	26	1.78
1600456--1600482	4	6.8	4	100	0	54	25	0	0	74	0.83
1608064--1608116	20	2.7	20	74	11	63	28	33	15	22	1.94
1608125--1608167	21	2.0	21	95	0	77	20	23	16	39	1.92
1608169--1608213	20	2.2	20	96	0	81	42	22	15	20	1.89
1608210--1608248	20	2.0	20	94	0	69	51	25	7	15	1.70
1608280--1608340	20	3.2	20	75	13	65	32	18	11	37	1.86
1608287--1608350	18	3.4	18	77	12	58	31	18	14	35	1.91
1608490--1608528	16	2.5	15	84	8	51	28	5	0	66	1.12
1609124--1609157	12	2.8	12	90	0	50	55	29	0	14	1.40
1609283--1609336	24	2.2	24	93	0	90	20	18	20	40	1.91
1611596--1611631	18	2.0	18	94	0	63	55	25	2	16	1.55
1611960--1612000	20	2.0	20	90	0	64	43	21	17	17	1.87
1612208--1612264	27	2.1	28	93	3	98	49	19	0	31	1.49
1612219--1612260	13	3.2	13	80	6	57	57	16	0	26	1.40
1613607--1613681	21	3.6	21	81	0	87	22	22	32	22	1.98
1616177--1616239	21	3.0	21	92	0	99	17	28	38	15	1.91
1617668--1617715	19	2.5	20	75	3	53	29	10	8	52	1.65
1618501--1618553	23	2.3	23	93	0	88	30	24	24	20	1.99
1618569--1618785	103	2.1	102	95	0	389	36	24	13	24	1.92
1623669--1623729	23	2.7	23	89	0	95	26	27	26	19	1.99
1623745--1623960	103	2.1	102	97	0	405	36	24	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625639--1625683	21	2.1	21	87	0	63	15	24	28	31	1.96
1627608--1627649	21	2.0	21	90	0	66	16	28	38	16	1.91
1628049--1628089	20	2.1	20	86	4	57	48	21	17	12	1.79
1628475--1628533	22	2.7	22	81	0	73	23	18	38	18	1.93
1628640--1628748	20	5.4	20	79	9	125	17	17	24	40	1.91
1628636--1628748	40	2.8	40	86	5	158	16	16	23	42	1.88
1628722--1628768	20	2.3	20	92	0	76	21	17	25	36	1.94
1629522--1630023	250	2.0	250	98	0	977	32	22	15	29	1.95
1635227--1635275	25	2.0	25	88	8	73	34	4	0	61	1.15
1636848--1636920	36	2.0	36	100	0	146	24	21	13	39	1.90
1639219--1639279	13	4.6	14	74	15	58	77	4	1	16	1.03
1644686--1644768	43	2.0	43	95	2	150	42	7	12	38	1.70
1659434--1659459	3	8.7	3	100	0	52	30	34	0	34	1.58
1659845--1659873	13	2.1	14	93	6	51	20	0	13	65	1.26
1660370--1660421	3	17.3	3	83	0	59	28	32	3	34	1.76
1671718--1671758	3	13.7	3	100	0	82	31	0	0	68	0.90
1677019--1677043	13	1.9	13	100	0	50	48	16	16	20	1.82
1689096--1689132	17	2.2	17	100	0	74	51	13	5	29	1.63
1692421--1692479	26	2.4	24	82	17	61	28	1	13	55	1.48
1694038--1694079	16	2.4	18	81	18	54	69	0	11	19	1.19
1695570--1696772	164	7.3	162	80	6	1238	25	19	24	30	1.98
1695550--1696713	248	4.7	248	90	1	1606	24	19	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696677--1696889	117	1.8	116	85	1	300	27	19	23	30	1.98
1696592--1696992	200	2.0	200	90	1	626	26	19	24	29	1.98
1696792--1697130	84	4.1	83	76	6	310	25	18	25	30	1.98
1704493--1704636	60	2.4	60	89	2	209	34	13	13	38	1.85
1705964--1706008	19	2.4	19	100	0	90	66	0	20	13	1.24
1707216--1707279	28	2.3	28	84	7	94	15	20	29	34	1.94
1710052--1710222	29	5.9	29	84	6	222	49	12	5	33	1.63
1719706--1719791	45	1.9	45	85	4	120	51	12	12	23	1.74
1721711--1721744	2	17.0	2	100	0	68	50	0	0	50	1.00
1721952--1722003	20	2.5	21	87	3	70	40	17	21	21	1.91
1721937--1722194	41	6.3	41	70	9	134	33	19	18	28	1.95
1721910--1722085	21	8.5	21	69	9	76	27	21	18	32	1.96
1722075--1722186	20	5.6	20	84	4	136	37	20	20	21	1.94
1722780--1722930	52	2.8	54	89	7	234	11	21	20	46	1.82
1722767--1722930	71	2.2	73	91	6	260	11	21	20	46	1.81
1722762--1722930	19	9.1	19	87	7	249	11	21	20	46	1.82
1725025--1725143	42	2.8	42	78	12	102	23	35	17	23	1.95
1726456--1726491	14	2.6	14	95	0	63	30	0	25	44	1.54
1726598--1726695	32	3.0	32	76	10	94	43	22	20	13	1.86
1726661--1726705	19	2.4	19	92	0	72	44	24	15	15	1.85
1726701--1726851	19	8.7	19	67	21	89	13	23	19	43	1.86
1726705--1726831	33	3.8	33	92	0	209	12	23	18	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1726825--1726897	20	3.6	20	68	23	53	24	16	24	34	1.95
1729159--1729183	12	2.1	12	100	0	50	0	28	0	72	0.86
1729370--1729416	24	2.0	24	91	0	76	34	17	19	29	1.94
1729374--1729425	24	2.2	24	82	0	59	36	19	17	26	1.94
1730215--1730293	20	3.9	20	77	9	70	35	22	18	22	1.96
1730253--1730302	20	2.5	20	80	0	73	38	22	18	22	1.94
1730520--1730583	20	3.2	20	81	0	92	40	23	21	14	1.90
1730520--1730591	20	3.6	20	74	7	74	43	20	20	15	1.88
1730514--1730591	40	2.0	40	89	5	122	44	20	19	15	1.86
1730500--1730596	40	2.7	34	75	17	95	41	22	21	14	1.89
1732209--1732300	42	2.2	42	88	1	141	20	15	42	21	1.89
1732236--1732296	21	2.9	21	73	9	70	21	13	42	22	1.87
1732644--1732696	20	2.7	20	84	0	79	35	18	24	20	1.95
1732736--1732818	19	4.6	19	75	14	86	15	19	18	46	1.83
1732803--1732846	20	2.2	20	88	4	63	22	25	15	36	1.94
1733392--1733439	18	2.7	18	90	0	78	16	10	45	27	1.80
1734759--1734817	20	3.0	20	87	0	73	44	22	18	15	1.87
1735054--1735101	22	2.3	21	89	7	71	25	14	39	20	1.91
1735346--1735450	21	5.0	22	76	14	89	17	20	23	39	1.92
1735277--1735408	41	3.2	41	81	2	167	22	14	25	37	1.92
1735291--1735404	20	5.7	20	79	6	113	23	15	27	33	1.95
1735337--1735467	41	3.2	41	85	5	149	19	20	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1735394--1735467	21	3.5	21	94	0	121	18	24	20	36	1.95
1735457--1735509	21	2.5	20	79	8	70	33	18	26	20	1.96
1735393--1735482	42	2.1	42	81	0	108	23	22	21	33	1.97
1735852--1735884	2	16.5	2	100	0	66	51	0	0	48	1.00
1736057--1736307	63	4.0	63	94	1	441	27	37	10	24	1.89
1736057--1736307	125	2.0	125	95	0	448	27	37	10	24	1.89
1738177--1738228	14	4.0	12	80	12	50	63	0	0	36	0.95
1738179--1738228	26	1.9	26	84	8	66	66	0	0	34	0.92
1746217--1746255	12	3.1	12	85	10	51	41	0	0	58	0.98
1746234--1746299	21	3.2	20	77	14	62	45	0	4	50	1.22
1746218--1746360	24	6.0	24	76	12	125	48	0	2	48	1.16
1746267--1746355	21	4.4	21	73	13	71	53	0	1	44	1.07
1746291--1746343	27	2.0	27	88	0	79	60	0	0	39	0.97
1746266--1746361	10	9.6	10	72	20	67	53	0	2	44	1.12
1746413--1746454	22	1.9	22	90	9	68	40	7	9	42	1.65
1747651--1747690	17	2.5	15	88	8	53	52	2	0	45	1.14
1747831--1747873	16	2.7	16	78	7	52	37	11	9	41	1.74
1747810--1747851	22	1.9	22	90	9	68	42	9	7	40	1.65
1747896--1747984	24	3.8	22	80	14	90	42	4	2	50	1.35
1747904--1747950	13	3.8	13	83	8	62	42	4	4	48	1.42
1747941--1747969	14	2.0	15	93	6	51	41	3	0	55	1.17
1747920--1747976	13	4.5	13	77	16	57	40	3	3	52	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1747973--1748019	21	2.2	22	81	11	53	53	6	2	38	1.39
1754935--1754974	21	1.9	21	89	0	62	27	0	35	37	1.57
1759534--1759573	21	1.9	21	85	10	55	35	10	2	52	1.48
1763814--1763844	3	10.3	3	100	0	62	67	0	32	0	0.91
1764651--1764791	41	3.4	41	75	11	135	30	15	23	30	1.95
1764608--1764867	82	3.2	80	78	5	254	32	15	22	29	1.95
1765268--1765322	22	2.5	23	82	8	69	47	9	14	29	1.75
1766226--1766276	15	3.5	15	81	7	61	64	1	3	29	1.22
1766366--1766519	83	1.8	83	82	6	195	30	18	15	35	1.92
1766466--1766546	41	2.0	42	85	2	110	35	17	12	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11