genome.fa.s8183.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2364390

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  9  of  11  ( 1319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1768897--1768967	36	2.0	36	97	0	133	42	16	9	30	1.81
1774022--1774066	23	2.0	23	81	0	54	22	26	24	26	2.00
1782229--1782281	21	2.5	21	79	11	72	39	18	39	1	1.62
1782260--1782328	21	3.3	21	75	4	68	44	17	33	4	1.68
1782765--1782919	43	3.5	43	76	12	134	29	25	18	26	1.98
1783245--1783321	33	2.3	33	97	0	145	33	14	24	27	1.94
1788218--1788746	266	2.0	266	96	0	977	34	7	23	34	1.83
1789152--1789201	24	2.1	24	84	0	64	38	2	26	34	1.68
1790062--1790147	21	4.1	21	90	0	136	26	22	25	25	2.00
1790066--1790147	42	2.0	42	97	0	155	26	21	25	25	2.00
1790168--1790209	21	2.0	21	95	0	75	23	21	28	26	1.99
1795821--1795893	36	2.0	37	94	2	130	20	32	30	16	1.95
1799109--1799175	2	33.5	2	100	0	134	49	0	0	50	1.00
1801217--1801279	18	3.7	18	83	10	78	23	34	25	15	1.95
1801230--1801282	15	3.3	15	92	7	79	26	33	22	16	1.96
1801894--1801965	37	2.0	37	89	5	112	22	30	31	15	1.94
1804564--1804633	30	2.3	30	92	0	113	38	4	25	31	1.75
1804867--1804910	23	1.9	23	90	0	70	20	15	27	36	1.93
1809927--1809982	8	6.9	8	74	25	55	82	14	3	0	0.81
1809948--1809981	6	5.8	6	93	6	61	85	14	0	0	0.60
1809948--1809981	17	1.9	18	94	5	61	85	14	0	0	0.60
1817360--1817407	23	2.1	23	88	0	69	35	12	18	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1817447--1818107	329	2.0	331	97	1	1256	37	11	8	42	1.70
1818150--1818222	23	3.2	22	88	3	83	39	20	4	35	1.72
1818160--1818222	23	2.7	23	92	0	99	38	19	4	38	1.73
1818627--1818713	39	2.2	39	95	0	156	17	13	20	48	1.81
1818972--1819008	18	2.1	18	89	0	56	51	10	5	32	1.60
1819397--1819447	25	2.0	25	92	0	84	39	19	7	33	1.81
1819634--1819706	23	3.2	23	80	7	85	39	19	5	35	1.75
1822523--1823409	183	4.8	183	95	0	1594	34	15	14	35	1.88
1824830--1824883	3	18.0	3	84	0	72	25	33	3	37	1.74
1824830--1824887	12	4.8	12	93	0	80	25	32	5	36	1.78
1824830--1824898	18	3.8	18	86	0	75	23	33	5	37	1.79
1824843--1824895	12	4.4	12	92	0	70	22	33	7	35	1.83
1826357--1827723	199	6.9	199	97	1	2573	31	16	15	36	1.90
1826357--1827723	396	3.4	397	97	1	2562	31	16	15	36	1.90
1827842--1827890	19	2.6	19	93	0	80	57	10	2	30	1.43
1829688--1829748	32	1.9	32	83	6	79	24	45	0	29	1.53
1829781--1829845	21	3.1	21	80	6	69	15	29	15	40	1.88
1832071--1832113	20	2.3	19	88	11	63	20	13	11	53	1.71
1832076--1832122	20	2.4	19	79	10	58	19	14	10	55	1.68
1832244--1832289	20	2.3	20	89	10	76	17	17	10	54	1.70
1837685--1837736	27	1.9	27	84	7	70	28	5	0	65	1.16
1839517--1839562	21	2.2	22	85	11	62	41	6	8	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843294--1843424	63	2.1	64	94	2	230	19	11	10	58	1.62
1846016--1846146	60	2.2	58	82	10	151	33	14	16	35	1.90
1846170--1846211	14	3.0	14	76	13	50	50	0	2	47	1.14
1847580--1847613	9	3.8	9	88	11	52	38	0	0	61	0.96
1847580--1847613	17	1.9	18	94	5	61	38	0	0	61	0.96
1851014--1851076	32	2.0	32	87	0	90	20	17	22	39	1.92
1856460--1856499	20	2.0	20	95	4	73	42	10	25	22	1.84
1858805--1858848	21	2.1	21	83	8	54	29	18	2	50	1.59
1867073--1867165	22	4.3	22	68	20	61	53	4	4	37	1.40
1871548--1871646	10	10.2	9	71	22	51	18	3	1	77	0.95
1871537--1871644	19	5.6	19	71	16	71	20	2	0	75	0.98
1871544--1871613	24	2.9	23	78	16	70	20	2	1	75	1.00
1871521--1871644	49	2.5	49	78	11	135	20	2	1	75	0.99
1873547--1873580	7	4.7	7	96	3	59	14	14	14	55	1.69
1874832--1874873	12	3.6	12	80	6	50	78	4	11	4	1.06
1874829--1874860	12	2.6	12	95	5	55	81	6	12	0	0.87
1874933--1875070	69	2.0	69	88	2	206	39	23	13	23	1.91
1875983--1876079	32	3.0	32	89	4	133	25	13	26	34	1.93
1876717--1877034	106	3.0	106	90	0	485	36	23	17	22	1.95
1877348--1877536	65	2.9	64	78	6	218	31	19	11	37	1.88
1877692--1877773	36	2.4	34	91	6	130	40	17	9	32	1.82
1878874--1878922	25	2.0	25	84	4	64	28	4	4	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879011--1879156	48	2.9	48	77	14	145	19	6	1	71	1.15
1880662--1880697	2	18.0	2	100	0	72	50	0	0	50	1.00
1894335--1894566	118	2.0	118	97	0	437	39	6	15	39	1.72
1895355--1895403	13	3.8	13	86	0	71	28	18	18	34	1.94
1904241--1904309	18	3.8	18	78	0	75	20	21	33	24	1.97
1904241--1904309	36	1.9	36	81	0	84	20	21	33	24	1.97
1907432--1907469	20	1.9	20	88	0	58	31	21	23	23	1.98
1908356--1908512	64	2.5	64	78	10	169	35	19	17	26	1.95
1908889--1908998	29	3.8	29	93	2	186	46	16	20	17	1.84
1909083--1909116	15	2.3	15	94	0	59	17	14	32	35	1.91
1910588--1910656	18	3.8	18	84	0	84	18	20	36	24	1.95
1910588--1910656	36	1.9	36	84	0	93	18	20	36	24	1.95
1911783--1911881	10	10.3	9	76	12	90	15	26	28	30	1.96
1911783--1911881	19	5.2	19	80	13	89	15	26	28	30	1.96
1911782--1911856	29	2.5	31	91	8	129	16	25	28	30	1.96
1911783--1911881	29	3.4	28	86	5	117	15	26	28	30	1.96
1911878--1911920	22	2.0	22	100	0	86	18	48	23	9	1.76
1911910--1911953	7	6.4	7	94	5	81	15	27	29	27	1.96
1919133--1919231	10	10.3	9	76	12	90	15	27	28	29	1.96
1919133--1919231	19	5.2	19	80	13	89	15	27	28	29	1.96
1919132--1919231	29	3.4	30	85	9	127	16	27	28	29	1.97
1919228--1919285	5	10.8	5	78	14	62	18	51	22	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1919228--1919292	22	3.0	22	100	0	130	18	49	23	9	1.76
1919282--1919311	7	4.4	7	91	8	53	16	26	30	26	1.97
1919285--1919311	13	2.1	13	100	0	54	14	25	29	29	1.95
1920180--1920256	31	2.5	31	82	2	100	14	25	31	28	1.95
1920180--1920303	63	2.0	63	82	6	153	16	27	29	26	1.97
1923434--1923535	23	4.4	23	82	0	96	17	21	24	36	1.95
1923658--1923697	6	6.7	6	85	0	53	42	2	22	32	1.67
1923657--1923691	18	1.9	18	94	0	61	42	2	22	31	1.68
1926186--1926237	16	3.2	17	72	22	58	44	0	19	36	1.51
1931285--1931383	52	1.9	52	97	0	189	35	3	33	28	1.73
1933160--1933194	19	1.9	17	88	11	52	28	5	17	48	1.69
1933918--1933946	14	2.1	14	100	0	58	31	0	0	68	0.89
1933961--1933985	13	1.9	13	100	0	50	48	8	8	36	1.62
1938715--1938770	23	2.4	23	87	0	76	23	5	17	53	1.64
1952608--1952727	43	2.8	43	85	0	150	26	23	20	30	1.98
1954688--1954717	15	2.0	15	93	0	51	16	46	23	13	1.82
1961587--1961644	20	2.7	20	81	10	62	29	20	24	25	1.99
1963171--1963248	23	3.4	22	75	8	75	19	20	24	35	1.95
1965571--1965612	21	2.0	21	95	0	75	26	28	21	23	1.99
1965722--1965784	19	3.3	19	86	0	72	34	12	11	41	1.79
1965850--1965909	29	2.0	31	90	6	97	41	16	6	35	1.75
1967159--1967206	19	2.5	20	86	3	71	29	10	6	54	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1968418--1968459	21	2.0	21	90	0	66	26	26	23	23	2.00
1968569--1968631	19	3.3	19	86	0	72	34	12	11	41	1.79
1968696--1968755	29	2.0	31	90	6	97	41	16	6	35	1.75
1976902--1976936	2	17.5	2	100	0	70	48	0	0	51	1.00
1977523--1977608	35	2.5	35	82	3	93	40	19	1	38	1.60
1977577--1977619	21	2.0	21	100	0	86	46	13	0	39	1.44
1977742--1977778	15	2.4	16	86	13	51	32	2	5	59	1.34
1984421--1984533	3	37.7	3	94	0	199	34	1	0	63	1.05
1985020--1985053	16	2.0	18	88	11	54	76	11	11	0	1.02
1986631--1986655	7	3.6	7	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11