genome.fa.s8229.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008229.1 Hibiscus syriacus cultivar Beakdansim tig00110865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3634043

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 2034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247138--247187	23	2.2	23	82	7	57	28	4	4	64	1.30
248621--248879	30	8.7	30	78	9	262	20	12	6	60	1.54
249027--249060	2	17.0	2	100	0	68	50	0	0	50	1.00
250802--250831	4	7.5	4	100	0	60	23	0	0	76	0.78
253463--254165	4	176.2	4	99	0	1392	25	0	25	49	1.50
255152--255263	43	2.7	40	75	10	111	24	34	17	23	1.96
255157--255397	133	1.8	133	88	0	374	26	31	17	25	1.97
259692--259815	62	2.0	62	100	0	248	41	12	17	27	1.86
271052--271120	35	2.0	35	85	5	95	33	18	26	21	1.97
271557--271598	17	2.4	18	84	11	52	40	7	14	38	1.73
276919--276959	19	2.2	18	86	4	55	24	2	24	48	1.63
278142--278176	18	1.9	18	94	0	61	17	20	34	28	1.95
280384--280505	61	2.0	61	96	0	226	35	9	14	40	1.80
285895--285927	14	2.4	14	100	0	66	6	30	0	63	1.18
294612--294670	21	2.9	21	82	9	61	16	18	1	62	1.41
312805--312840	15	2.4	15	90	0	54	2	11	0	86	0.68
312805--312842	16	2.4	16	82	8	51	2	10	0	86	0.66
313796--313851	23	2.4	23	93	0	103	50	0	3	46	1.19
313857--313933	27	2.8	28	69	9	68	51	0	5	42	1.24
326840--326891	21	2.5	21	81	3	61	38	19	25	17	1.93
326877--326954	41	1.9	41	86	0	111	39	21	16	21	1.92
326880--326974	20	4.7	20	80	2	91	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327162--327205	22	2.0	22	95	0	79	20	45	15	18	1.85
328825--328869	18	2.5	18	85	0	63	24	44	15	15	1.85
329351--329396	20	2.3	20	88	0	65	36	26	21	15	1.93
329406--329463	14	3.9	14	79	16	71	48	24	17	10	1.78
329390--329480	32	2.8	33	93	3	157	47	23	18	10	1.80
329497--329554	14	3.9	14	79	16	71	8	17	25	48	1.75
329492--329570	32	2.4	33	95	2	142	10	18	24	46	1.80
329513--329612	19	5.5	19	77	12	77	14	21	22	43	1.87
329555--329609	20	2.8	19	89	5	83	18	25	21	34	1.96
331480--331515	14	2.6	14	90	0	54	30	0	22	47	1.52
331622--331675	14	3.5	14	77	22	63	48	20	20	11	1.80
331603--331680	33	2.4	33	91	0	120	42	20	23	14	1.88
331699--331756	20	2.9	20	94	0	98	17	22	22	37	1.93
332017--332086	29	2.4	29	97	0	131	20	21	22	35	1.96
332847--332900	24	2.2	24	90	0	81	24	16	20	38	1.92
333075--333099	12	2.1	12	100	0	50	72	0	28	0	0.86
335392--335522	19	7.7	19	66	23	94	42	19	22	14	1.88
335392--335518	33	3.8	33	88	4	202	42	19	22	14	1.88
335393--335525	66	2.0	66	97	0	248	41	19	22	16	1.90
335702--335738	14	2.6	14	82	0	56	45	21	0	32	1.52
337096--337162	21	3.2	21	65	4	55	19	19	35	25	1.95
337096--337218	42	2.9	41	80	7	113	22	17	36	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339219--339383	19	9.1	19	76	15	152	43	21	23	12	1.86
339219--339383	33	4.6	36	81	11	153	43	21	23	12	1.86
339379--339459	19	4.5	19	74	16	73	11	17	24	46	1.80
339976--340028	20	2.7	20	93	0	88	26	20	28	24	1.99
340037--340090	20	2.7	20	97	0	99	25	18	24	31	1.97
339977--340111	61	2.2	61	82	2	164	22	19	24	33	1.97
340079--340130	21	2.5	21	84	3	70	17	23	19	40	1.91
346952--347034	22	3.8	22	76	12	80	22	27	24	25	2.00
346952--347013	23	2.8	22	76	13	72	20	27	25	25	1.99
349247--349298	21	2.5	21	93	3	88	19	38	23	19	1.93
351805--351879	23	3.4	22	87	7	107	30	26	18	24	1.98
351816--351879	23	2.8	23	92	0	110	31	26	20	21	1.98
352694--352745	20	2.6	20	78	6	61	26	26	13	32	1.94
355726--355751	7	3.7	7	100	0	52	57	15	0	26	1.38
356198--356250	20	2.6	21	88	5	74	24	24	18	32	1.97
356503--356542	20	2.0	20	85	9	55	35	22	2	40	1.68
361011--361068	15	3.9	15	95	0	98	67	0	18	13	1.23
364919--364943	3	8.3	3	100	0	50	68	0	0	32	0.90
365409--365448	17	2.4	17	87	4	55	65	5	5	25	1.34
367271--367471	73	2.8	72	81	6	185	46	6	11	35	1.66
367317--367471	74	2.1	73	83	3	186	43	7	12	36	1.71
367718--368139	100	4.3	100	82	5	396	36	14	10	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367903--368199	94	3.1	93	88	4	396	36	15	12	35	1.85
368469--368647	77	2.3	76	83	5	234	34	13	10	40	1.80
374866--374891	13	2.0	13	100	0	52	38	0	0	61	0.96
379323--379373	26	2.0	26	84	7	68	33	3	1	60	1.26
387982--388344	146	2.5	146	81	8	389	39	12	16	32	1.85
387982--388383	150	2.7	149	78	9	439	38	12	16	33	1.85
400598--400808	55	3.8	54	82	6	271	25	25	23	26	2.00
400605--400816	27	7.7	27	67	17	107	25	26	21	26	2.00
400601--400809	113	1.9	113	91	3	350	24	26	22	25	2.00
408689--408756	29	2.5	26	81	11	82	60	5	16	17	1.55
410181--410227	3	15.7	3	78	8	51	61	2	2	34	1.20
410555--410750	40	4.6	40	66	15	124	24	18	31	25	1.98
410412--410771	131	2.7	131	82	4	429	23	18	30	26	1.98
410774--410802	15	1.9	15	100	0	58	34	17	27	20	1.95
410842--411023	36	5.4	35	64	20	111	40	16	17	25	1.90
410778--411068	65	4.4	63	82	10	279	41	15	18	24	1.89
411029--411100	36	2.0	36	86	0	99	38	12	20	27	1.89
411155--411269	36	3.2	36	77	6	124	35	14	19	30	1.92
412427--412460	14	2.5	14	90	4	52	0	14	5	79	0.91
412435--412470	18	2.0	18	89	10	56	0	19	2	77	0.88
413826--413858	17	2.0	17	88	5	50	36	30	6	27	1.81
415947--415978	16	2.1	15	94	5	55	59	6	15	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416128--416212	30	2.8	30	80	3	82	64	5	9	20	1.43
416787--416861	37	2.0	37	94	0	132	21	29	33	16	1.95
418219--418280	8	8.0	8	70	20	51	50	3	43	3	1.34
418245--418280	14	2.6	14	100	0	72	55	0	44	0	0.99
420978--421032	13	4.2	13	75	13	58	49	12	3	34	1.59
421018--421116	33	3.0	33	94	1	164	45	15	7	32	1.73
421111--421150	21	1.9	21	94	0	71	47	7	15	30	1.72
423581--423638	27	2.1	28	84	9	75	22	17	15	44	1.86
424015--424082	32	2.1	32	88	0	100	30	41	5	22	1.77
426302--426353	3	18.0	3	76	7	54	59	1	0	38	1.08
426302--426353	12	4.2	12	85	4	77	59	1	0	38	1.08
428487--428532	3	16.0	3	77	8	51	58	2	0	39	1.10
428484--428525	15	2.9	15	89	6	61	57	2	0	40	1.12
428655--429056	73	5.5	73	91	1	660	32	20	20	26	1.97
428655--429056	149	2.7	146	90	2	660	32	20	20	26	1.97
428655--429056	222	1.8	222	94	0	714	32	20	20	26	1.97
430121--430223	54	1.9	54	81	0	125	24	21	14	39	1.91
437570--437611	17	2.5	17	96	0	75	45	19	16	19	1.86
438453--438491	2	20.0	2	86	5	53	48	0	0	51	1.00
438463--438497	17	2.1	17	100	0	70	48	0	0	51	1.00
440124--440172	3	17.0	3	79	8	57	61	2	0	36	1.08
440126--440174	16	2.9	16	81	6	53	63	2	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454229--454279	24	2.1	24	100	0	102	35	9	7	47	1.66
456421--456500	32	2.5	32	85	0	97	30	13	22	33	1.93
456832--457139	124	2.5	124	89	1	456	28	24	18	28	1.98
456832--457282	124	3.6	124	82	3	444	28	26	18	26	1.98
457986--458047	32	1.9	32	96	0	115	32	38	3	25	1.72
464330--464410	22	3.7	22	96	0	144	37	18	8	35	1.82
464660--464708	6	8.2	6	81	0	62	30	44	16	8	1.76
465992--466052	10	6.4	10	76	16	51	72	0	3	24	1.00
466004--466074	21	3.3	22	79	13	69	66	0	4	29	1.11
466237--466287	23	2.2	24	82	3	59	64	0	3	31	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17