genome.fa.s8229.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008229.1 Hibiscus syriacus cultivar Beakdansim tig00110865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3634043

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  9  of  17  ( 2034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814712--1814840	56	2.3	56	91	0	213	13	27	17	40	1.88
1815357--1815526	60	2.8	60	84	0	232	35	23	19	21	1.96
1815337--1815530	20	9.6	20	79	5	185	35	23	20	20	1.96
1815913--1815983	33	2.2	33	94	0	124	11	23	16	47	1.79
1816063--1816137	20	3.8	20	80	5	89	42	20	24	13	1.87
1816121--1816177	14	3.7	14	75	20	60	43	22	24	8	1.81
1816075--1816193	33	3.4	33	88	6	157	44	22	22	10	1.82
1816075--1816163	19	4.9	19	73	15	80	43	21	23	11	1.84
1816211--1816300	14	5.7	14	70	23	63	10	24	22	43	1.83
1816194--1816308	33	3.5	33	95	0	203	10	22	20	46	1.80
1816189--1816286	19	5.7	19	67	22	72	11	22	21	44	1.83
1818006--1818474	93	5.1	93	99	0	913	21	12	18	46	1.83
1818538--1818650	19	6.5	19	74	19	120	46	28	17	7	1.74
1818558--1818650	33	2.8	32	91	4	150	46	27	18	7	1.76
1818538--1818650	52	2.2	51	81	9	131	46	28	17	7	1.74
1818646--1818780	19	7.6	19	75	16	128	11	20	22	45	1.82
1818668--1818724	14	3.7	14	77	20	60	10	21	22	45	1.82
1818651--1818743	33	2.8	33	95	0	168	10	20	21	47	1.80
1820704--1820739	14	2.6	14	95	0	63	33	0	22	44	1.53
1820846--1820946	19	5.6	19	86	11	158	44	17	22	14	1.86
1820961--1821015	14	3.6	14	76	21	56	10	21	20	47	1.80
1820975--1821214	19	13.4	19	84	14	332	14	20	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1820953--1821214	33	7.4	36	89	8	334	14	21	17	46	1.83
1823697--1823743	24	2.0	24	87	8	69	38	21	14	25	1.92
1824426--1824635	20	10.5	20	82	4	208	20	17	25	37	1.93
1824602--1824699	20	4.8	20	77	3	79	21	18	23	36	1.95
1824602--1824758	41	3.9	41	70	14	110	18	17	25	38	1.93
1824840--1825074	72	3.2	71	79	10	262	41	8	5	45	1.57
1824840--1825074	36	6.4	36	79	9	217	41	8	5	45	1.57
1824878--1825073	108	1.8	107	85	7	279	41	8	4	45	1.55
1836441--1836513	28	2.6	28	91	0	110	21	12	24	41	1.88
1839046--1839105	23	2.6	23	83	0	75	18	26	28	26	1.98
1845995--1846055	23	2.7	23	89	0	95	19	26	27	26	1.99
1850117--1850179	28	2.2	28	94	0	108	41	4	3	50	1.39
1850144--1850267	36	3.4	36	85	4	169	42	8	3	45	1.49
1850162--1850312	36	4.3	35	79	15	127	43	8	2	45	1.48
1856515--1856555	20	2.0	20	95	0	73	34	9	21	34	1.87
1857783--1857811	8	3.6	8	100	0	58	68	0	31	0	0.89
1860574--1860640	24	2.9	24	68	18	61	25	19	25	29	1.98
1868367--1868486	6	19.3	6	73	26	92	77	0	15	5	1.00
1868374--1868483	7	15.6	7	72	14	84	78	0	15	5	0.98
1868365--1868471	29	3.7	28	75	21	105	77	0	14	6	1.01
1868409--1868474	23	3.0	23	95	4	118	77	0	16	6	0.96
1868404--1868486	23	3.5	24	88	11	111	78	0	16	4	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870049--1870316	113	2.4	113	83	3	335	36	14	19	29	1.91
1870325--1870565	122	2.0	122	85	6	334	37	14	21	26	1.92
1870773--1870858	3	29.7	3	78	15	92	30	2	1	66	1.12
1876515--1876602	26	3.4	26	96	0	158	48	5	15	29	1.68
1877669--1877705	8	4.6	8	89	0	56	29	0	32	37	1.58
1877661--1877705	16	2.8	16	96	3	81	28	2	33	35	1.70
1888721--1888775	21	2.6	21	86	11	69	27	29	18	25	1.98
1888766--1888818	23	2.4	22	84	12	65	24	18	16	39	1.91
1891325--1891349	12	2.1	12	100	0	50	12	24	0	64	1.27
1894192--1894270	26	3.2	25	76	13	76	63	1	5	30	1.24
1895130--1895206	28	2.7	27	81	13	84	64	2	1	31	1.15
1896465--1896557	3	31.7	3	79	12	104	64	1	2	32	1.12
1903657--1903715	25	2.5	24	91	8	95	49	0	6	44	1.29
1905872--1905928	3	19.0	3	76	20	57	70	0	1	28	0.98
1906132--1906203	30	2.4	30	90	0	117	25	18	26	30	1.98
1907993--1908028	7	5.1	7	100	0	72	13	30	0	55	1.39
1908717--1908780	7	9.1	7	100	0	128	56	0	29	14	1.39
1909032--1909077	22	2.1	22	84	8	58	19	13	6	60	1.54
1910063--1910087	13	1.9	13	100	0	50	40	8	0	52	1.31
1913523--1913720	86	2.3	86	85	2	247	30	21	23	24	1.99
1913782--1914439	85	7.8	85	86	3	799	35	20	18	25	1.95
1913783--1914439	256	2.6	254	86	3	887	35	20	18	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914861--1914949	37	2.3	39	81	9	103	46	1	6	46	1.37
1914933--1914961	2	14.5	2	100	0	58	51	0	0	48	1.00
1914947--1915047	36	2.8	36	84	3	121	46	4	7	40	1.55
1915009--1915062	26	2.1	26	89	3	83	48	1	3	46	1.30
1914978--1915108	62	2.1	62	83	9	162	48	3	6	40	1.48
1915034--1915132	37	2.7	36	84	10	112	46	3	6	44	1.43
1915082--1915271	38	4.8	38	88	6	245	42	3	5	48	1.43
1915036--1915291	39	6.8	37	80	13	199	44	3	5	46	1.43
1915346--1915421	36	2.1	37	85	9	104	28	6	1	63	1.28
1916146--1916230	7	12.1	7	100	0	170	56	0	29	14	1.38
1916606--1916717	8	13.2	8	71	21	61	23	3	0	72	1.06
1916606--1916732	23	5.3	23	67	18	64	23	3	0	71	1.08
1917579--1918077	85	5.9	85	86	2	646	35	20	18	26	1.95
1917580--1918077	171	2.9	170	87	2	653	35	20	18	25	1.95
1918566--1918684	2	60.5	2	91	3	197	49	1	0	47	1.17
1918731--1918784	26	2.1	26	89	3	83	48	1	3	46	1.30
1918667--1918769	36	2.8	37	79	8	111	45	4	7	41	1.54
1918700--1918830	62	2.1	62	84	6	169	49	3	6	40	1.46
1918758--1918994	38	6.1	36	79	14	199	44	3	5	46	1.43
1918756--1918854	37	2.7	36	85	7	119	47	3	5	44	1.40
1918838--1918864	2	13.5	2	100	0	54	51	0	0	48	1.00
1918803--1918977	37	4.2	45	81	17	186	44	4	4	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918853--1918994	38	3.8	37	90	3	221	42	4	4	48	1.44
1918852--1919010	38	4.2	38	87	6	200	44	3	4	47	1.41
1919863--1919933	7	10.1	7	96	0	133	57	0	28	14	1.37
1920290--1920407	63	1.9	63	81	8	143	23	5	0	69	1.16
1920333--1920407	29	2.6	29	81	10	75	22	4	1	72	1.10
1920425--1920462	20	2.0	19	85	10	51	15	10	0	73	1.09
1921370--1921463	45	2.1	45	91	0	152	39	18	17	25	1.91
1922600--1922687	18	4.8	18	80	2	95	32	20	27	19	1.97
1927337--1927729	81	4.9	80	85	3	486	32	19	10	37	1.85
1927338--1927729	159	2.4	159	84	3	487	32	19	10	37	1.85
1932709--1932781	13	5.8	12	74	19	53	28	4	34	32	1.76
1932690--1932794	36	2.9	36	94	1	176	28	4	35	31	1.78
1933241--1933325	11	7.2	11	72	22	66	31	36	3	28	1.74
1933238--1933342	36	2.9	36	95	1	185	30	36	4	28	1.78
1937218--1937308	2	45.5	2	95	4	166	49	0	1	49	1.08
1937543--1937591	13	3.8	13	83	0	62	36	18	18	26	1.94
1939416--1939512	23	4.2	23	77	0	95	34	23	23	18	1.96
1941554--1941579	13	2.0	13	100	0	52	46	23	0	30	1.53
1951225--1951281	24	2.4	23	82	8	69	33	21	22	22	1.97
1951246--1951348	23	4.4	23	79	10	86	32	22	26	19	1.97
1951424--1951487	14	4.4	14	73	7	56	39	21	7	31	1.82
1951424--1951551	45	2.9	44	82	2	139	38	18	7	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953005--1953070	28	2.4	28	97	0	123	12	19	31	36	1.89
1953005--1953079	28	2.7	28	89	0	78	13	18	29	38	1.89
1954883--1954936	28	2.0	28	85	7	76	25	3	9	61	1.43
1958155--1958230	34	2.2	34	90	0	116	46	10	1	42	1.46
1969601--1969659	21	2.8	22	82	7	86	10	28	40	20	1.85
1974317--1974347	7	4.4	7	100	0	62	25	29	29	16	1.96
1974337--1974379	22	2.0	22	100	0	86	9	23	48	18	1.76
1974376--1974425	9	5.3	9	81	9	55	24	30	30	16	1.96
1974378--1974426	10	5.1	10	78	11	50	24	30	26	18	1.98
1974378--1974417	19	2.1	19	100	0	80	25	32	25	17	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17