genome.fa.s8229.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008229.1 Hibiscus syriacus cultivar Beakdansim tig00110865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3634043

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 2034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1666798--1667114	167	1.9	168	94	1	557	36	12	20	29	1.90
1666963--1667270	36	8.9	35	69	19	168	37	13	21	28	1.91
1666898--1667252	102	3.5	102	92	0	586	36	12	20	29	1.90
1668130--1668180	22	2.3	22	96	0	93	25	11	27	35	1.91
1668819--1668908	41	2.3	39	81	9	101	1	12	7	78	1.00
1668831--1668912	37	2.2	36	79	12	87	0	12	8	79	0.94
1668870--1668915	16	3.1	16	82	17	55	0	10	8	80	0.91
1670070--1670108	8	5.0	8	84	6	53	58	12	17	10	1.61
1670070--1670108	15	2.5	15	87	4	51	58	12	17	10	1.61
1670630--1670668	18	2.2	18	100	0	78	35	10	33	20	1.86
1673221--1673263	18	2.5	17	85	7	61	67	2	4	25	1.22
1673675--1673743	34	2.0	34	91	0	111	33	13	11	42	1.80
1674127--1674161	15	2.3	15	85	0	52	65	0	5	28	1.15
1676683--1676720	20	2.0	20	94	5	69	57	0	7	34	1.28
1677942--1677973	14	2.4	14	90	10	50	78	0	0	21	0.76
1678011--1678417	37	11.3	37	80	12	456	41	7	4	46	1.52
1678011--1678417	109	3.8	108	86	7	505	41	7	4	46	1.52
1678366--1678442	25	3.0	25	88	3	82	42	6	3	46	1.48
1678381--1678442	25	2.5	25	94	0	106	41	6	3	48	1.45
1678459--1678500	15	2.6	17	78	17	54	54	9	2	33	1.46
1678819--1679191	202	1.8	202	84	1	514	25	20	20	33	1.97
1680180--1680217	19	2.0	19	89	0	58	63	0	5	31	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1680867--1680926	30	2.0	30	93	0	102	26	30	13	30	1.94
1681611--1681684	30	2.5	31	84	8	100	45	4	4	45	1.41
1681597--1681815	35	6.7	31	77	17	112	44	6	2	45	1.44
1681663--1681706	20	2.0	23	87	12	67	43	6	0	50	1.29
1681671--1681720	25	2.1	24	88	7	75	46	4	0	50	1.20
1681680--1681902	37	6.0	37	87	4	326	45	8	1	45	1.41
1681705--1681874	12	14.0	12	65	15	55	45	7	1	44	1.42
1681680--1681894	72	2.9	73	86	5	326	44	7	1	46	1.41
1683685--1683811	62	2.0	63	93	1	220	33	12	14	39	1.83
1687720--1687779	26	2.3	27	82	8	79	43	0	3	53	1.17
1687714--1687779	27	2.5	26	82	9	80	45	0	3	51	1.16
1687788--1687877	31	2.9	30	79	11	83	44	0	2	53	1.13
1687938--1688010	27	3.0	23	77	20	60	45	1	0	53	1.09
1687960--1688010	14	3.6	14	74	15	52	45	1	0	52	1.12
1688092--1688140	24	2.0	24	88	0	71	46	0	0	53	1.00
1688715--1688925	103	2.1	99	79	11	223	32	11	14	41	1.82
1690398--1690435	5	7.8	5	88	5	60	2	21	55	21	1.56
1690404--1690430	14	1.9	14	100	0	54	3	22	51	22	1.63
1690399--1690437	19	2.1	19	100	0	78	5	20	53	20	1.64
1690434--1690491	19	3.1	19	77	7	64	32	27	22	17	1.96
1697632--1697684	20	2.7	19	83	13	63	28	28	28	15	1.96
1699453--1699513	5	12.0	5	74	22	56	78	1	1	18	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1699455--1699513	16	3.9	16	76	10	54	79	1	1	16	0.89
1699459--1699534	36	2.1	37	82	7	93	75	5	1	18	1.07
1699592--1699626	16	2.2	16	89	0	52	74	0	2	22	0.95
1713540--1713641	38	2.6	39	76	9	100	77	2	4	14	1.06
1713542--1713612	30	2.5	27	80	13	72	80	2	4	12	0.97
1713550--1713650	39	2.6	39	83	7	109	76	2	5	14	1.10
1713696--1713740	5	8.8	5	81	13	56	64	0	2	33	1.06
1713678--1713735	26	2.3	25	87	3	80	67	0	6	25	1.16
1715105--1715166	30	2.1	30	100	0	124	43	12	6	37	1.69
1718564--1718589	11	2.4	11	100	0	52	65	0	0	34	0.93
1719775--1719818	23	1.9	23	85	0	61	40	18	13	27	1.88
1719917--1719983	3	22.0	3	90	3	107	62	1	1	34	1.13
1720163--1720398	73	3.2	73	91	0	373	33	19	18	28	1.96
1720204--1720429	73	3.1	72	80	10	185	36	18	17	27	1.93
1722195--1722550	182	2.0	182	96	0	658	28	20	15	35	1.93
1722598--1722737	75	1.9	75	83	3	183	30	20	15	34	1.93
1725549--1725581	8	3.9	9	88	11	52	0	21	0	78	0.75
1725550--1725591	17	2.5	17	88	0	57	0	23	0	76	0.79
1732661--1732723	3	21.0	3	81	12	76	65	1	1	31	1.12
1741586--1741628	23	2.0	22	90	9	70	23	32	23	20	1.98
1741590--1741640	23	2.4	21	84	12	61	23	29	27	19	1.98
1741610--1741651	19	2.3	19	83	4	50	21	28	35	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1750737--1750791	17	3.2	17	75	14	60	40	0	0	60	0.97
1754577--1754642	23	2.9	21	80	15	60	19	6	3	71	1.21
1754565--1754648	38	2.2	37	83	10	100	20	5	2	71	1.18
1754673--1754717	2	22.5	2	95	0	81	46	0	2	51	1.13
1755138--1755201	30	2.1	31	88	8	96	17	9	0	73	1.08
1756269--1756322	14	3.7	15	75	20	51	14	16	0	68	1.21
1765830--1765880	7	6.9	7	78	12	57	78	1	17	1	0.94
1765832--1765877	24	2.0	23	86	4	65	78	2	17	2	0.96
1766985--1767243	111	2.4	108	85	4	326	33	22	18	25	1.97
1769010--1769076	7	10.7	6	77	17	57	20	2	1	74	1.03
1769010--1769102	10	8.5	11	69	21	61	21	3	1	74	1.03
1769000--1769102	14	7.9	13	69	24	58	22	3	0	72	1.06
1769010--1769101	29	3.2	28	77	8	80	21	3	1	73	1.03
1769018--1769102	7	11.1	7	75	16	55	21	3	1	74	1.04
1769140--1769191	2	26.5	2	84	3	70	42	1	1	53	1.23
1769132--1769185	25	2.1	26	89	3	83	40	1	1	55	1.21
1769572--1769609	18	2.1	18	85	9	51	15	15	5	63	1.48
1769625--1769719	19	5.2	19	73	13	56	17	7	1	73	1.12
1769652--1769696	8	5.6	8	97	0	81	22	0	0	77	0.76
1769652--1769705	24	2.2	25	90	3	83	20	1	1	75	0.98
1770472--1770537	27	2.4	29	78	16	79	34	0	6	59	1.22
1771105--1771137	15	2.3	15	89	5	50	51	12	0	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1773006--1773044	20	2.0	19	85	5	51	48	5	0	46	1.24
1773010--1773320	36	8.7	36	72	17	181	41	8	2	47	1.48
1773211--1773235	12	2.1	12	100	0	50	44	8	8	40	1.63
1773920--1774927	84	12.1	84	80	5	1082	25	19	24	30	1.98
1773903--1774927	164	6.2	165	82	4	1104	25	19	24	30	1.98
1773903--1774905	248	4.0	246	85	4	1185	25	19	24	30	1.98
1776230--1776272	20	2.2	20	95	0	77	37	13	20	27	1.91
1781473--1781638	70	2.3	71	82	12	187	48	6	1	43	1.38
1781532--1781582	26	2.0	26	84	7	68	47	1	0	50	1.12
1781479--1781769	77	4.0	72	78	13	258	46	6	1	45	1.39
1781520--1781805	36	7.8	35	75	18	194	45	7	2	45	1.43
1781565--1781807	38	6.7	35	75	19	112	43	8	2	45	1.48
1781744--1781831	36	2.5	36	81	7	101	40	12	5	40	1.67
1783577--1783605	12	2.3	13	94	5	51	31	0	0	68	0.89
1784535--1784574	3	13.3	3	100	0	80	67	0	0	32	0.91
1786995--1787028	13	2.5	13	90	4	50	41	0	2	55	1.15
1793064--1793106	21	2.0	21	81	0	50	55	4	0	39	1.20
1794069--1794145	30	2.6	30	85	6	95	51	9	15	23	1.71
1794111--1794241	60	2.2	58	82	6	158	58	11	13	16	1.63
1794111--1794250	58	2.4	57	78	7	138	59	11	12	16	1.61
1796096--1796271	40	4.3	42	71	10	139	22	18	35	23	1.96
1796100--1796271	83	2.1	82	90	1	263	22	19	34	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796294--1796375	28	2.9	28	84	10	105	46	17	13	23	1.83
1796733--1796889	66	2.3	65	77	11	165	39	11	18	30	1.86
1797500--1798090	8	73.9	8	95	0	858	20	11	29	38	1.87
1801424--1801809	209	1.8	209	83	2	513	22	21	22	32	1.98
1803927--1804021	30	3.2	30	76	7	79	57	11	10	20	1.62
1805666--1805690	2	12.5	2	100	0	50	52	0	0	48	1.00
1805965--1806026	27	2.3	27	80	0	79	33	30	9	25	1.88
1806301--1806343	21	2.1	21	86	4	61	13	41	20	23	1.88
1806609--1806649	3	14.0	3	94	5	75	65	0	0	34	0.93
1807632--1807703	29	2.5	30	73	8	78	47	5	4	43	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17