genome.fa.s8229.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008229.1 Hibiscus syriacus cultivar Beakdansim tig00110865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3634043

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 2034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466758--466855	37	2.6	37	85	0	124	32	11	14	41	1.81
467612--468887	106	12.0	106	91	0	1978	22	18	24	34	1.96
469852--469906	22	2.5	22	96	0	101	25	12	25	36	1.91
470523--470557	15	2.3	16	90	9	56	2	5	2	88	0.68
470531--470559	15	1.9	15	100	0	58	3	6	0	89	0.57
473945--473981	19	1.9	19	89	10	58	67	0	24	8	1.17
475264--475307	13	3.4	13	82	17	56	72	0	0	27	0.85
475249--475317	22	3.1	23	82	12	74	73	0	1	24	0.91
475589--475633	19	2.4	18	81	3	54	66	2	0	31	1.04
476029--476130	37	2.8	37	84	0	123	30	12	14	42	1.83
480868--480927	22	2.7	22	85	10	86	38	18	8	35	1.81
481153--481212	6	10.0	6	75	13	61	31	50	11	6	1.65
481153--481210	12	4.8	12	85	4	73	31	51	10	6	1.62
481153--481212	18	3.3	18	80	13	70	31	50	11	6	1.65
483719--483776	27	2.1	27	96	0	107	43	17	12	27	1.84
486652--486732	22	3.7	22	88	0	108	41	18	6	33	1.75
486981--487017	6	6.2	6	93	0	65	35	45	16	2	1.61
492090--492147	22	2.6	22	86	0	71	39	15	8	36	1.78
495030--495060	6	5.2	6	100	0	62	35	48	16	0	1.46
504329--504371	16	2.5	17	77	7	52	48	6	6	37	1.57
504395--504459	2	32.5	2	100	0	130	50	0	0	49	1.00
506789--506843	24	2.4	24	85	8	71	32	20	12	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513095--513148	28	2.0	27	85	10	74	31	7	1	59	1.36
514810--514836	13	2.1	13	100	0	54	51	7	7	33	1.58
515215--515290	20	3.8	20	92	0	134	31	21	19	27	1.97
516122--516155	12	2.9	11	87	12	50	0	14	0	85	0.60
517029--517071	16	2.7	16	92	0	77	65	0	30	4	1.13
518289--518315	5	5.4	5	100	0	54	55	0	0	44	0.99
520018--520091	35	2.3	31	81	13	78	18	40	6	33	1.77
520188--520253	30	2.2	30	97	0	123	46	12	19	21	1.82
523264--523322	2	29.5	2	100	0	118	50	0	0	49	1.00
523312--523436	62	2.0	62	96	0	232	41	16	16	26	1.88
523882--524066	100	1.9	100	97	0	352	43	15	22	18	1.88
528293--528336	16	2.7	16	82	3	52	47	0	2	50	1.13
550882--550939	30	1.9	31	89	3	91	20	20	22	36	1.95
555345--555387	19	2.3	19	100	0	86	25	23	23	27	2.00
556098--556162	31	2.1	31	94	0	112	21	20	26	32	1.97
565072--565281	43	4.9	41	77	7	161	25	17	23	32	1.97
565121--565278	86	1.8	85	83	4	210	24	20	23	32	1.98
565661--565714	21	2.6	21	81	0	63	1	38	18	40	1.61
573569--573875	81	3.8	82	87	5	394	30	23	16	28	1.96
573623--573833	41	5.2	40	76	10	230	32	22	15	29	1.95
573569--573861	41	7.2	41	73	15	225	30	23	16	29	1.96
577125--577167	21	2.0	21	86	0	59	30	27	25	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577577--577645	31	2.3	30	82	5	77	36	2	27	33	1.72
583380--583422	21	2.0	21	81	0	50	30	27	27	13	1.95
583759--583827	31	2.3	30	82	5	77	36	2	27	33	1.72
584024--584074	25	2.1	25	88	3	77	23	23	27	25	2.00
596765--596804	15	2.7	15	100	0	80	27	0	47	25	1.52
601911--601950	21	2.0	20	85	5	53	27	25	15	32	1.95
601919--601984	20	3.2	20	84	2	78	25	19	19	34	1.96
602016--602056	20	2.0	21	90	4	66	24	17	19	39	1.92
602027--602070	22	2.0	21	82	4	52	25	13	18	43	1.86
603257--603389	21	6.4	21	75	0	97	28	18	3	48	1.65
603267--603389	42	2.9	42	81	0	129	30	19	3	47	1.65
603265--603383	63	1.9	63	87	3	177	30	20	4	45	1.70
603255--603420	63	2.6	62	78	9	176	28	16	3	50	1.62
603370--603409	20	2.0	21	90	5	64	27	10	5	57	1.52
607443--607488	16	2.8	17	87	9	60	69	2	6	21	1.22
607530--607580	19	2.8	18	77	13	52	58	3	1	35	1.28
607587--607674	41	2.1	41	89	4	133	56	2	4	36	1.32
610050--610094	19	2.4	18	77	3	54	37	0	15	46	1.46
614776--614842	3	22.7	3	82	8	75	35	0	0	64	0.94
616972--617034	30	2.1	29	85	8	83	36	4	1	57	1.30
620323--620354	15	2.1	15	94	0	55	25	18	9	46	1.79
624136--624166	9	3.6	9	91	8	55	22	22	0	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628075--628118	18	2.4	18	92	0	70	29	4	2	63	1.26
629267--630318	123	8.8	113	89	4	625	39	15	18	26	1.90
629507--630318	123	6.7	123	92	3	1374	40	15	18	25	1.90
629280--630318	246	4.3	245	88	6	1424	39	15	18	26	1.90
629393--630318	369	2.6	362	91	4	1448	40	15	18	25	1.90
630625--630708	3	27.7	3	79	11	64	42	0	0	57	0.99
632262--632297	19	1.9	19	88	5	56	41	2	0	55	1.14
634044--634078	18	1.9	18	94	0	61	20	28	20	31	1.97
638724--638812	18	4.9	18	94	0	151	19	21	31	28	1.97
648555--648626	31	2.3	31	88	4	101	20	13	18	47	1.82
654746--654783	14	2.7	14	84	8	51	65	0	7	26	1.19
654711--654853	66	2.2	65	82	12	184	64	0	6	27	1.24
654728--654859	67	2.0	67	86	8	189	63	0	6	29	1.20
654846--654879	5	6.6	5	89	3	50	82	2	0	14	0.79
654970--655029	5	11.6	5	77	19	61	73	0	5	21	1.02
654970--655029	30	1.9	32	87	12	90	73	0	5	21	1.02
655078--655120	18	2.4	18	84	7	52	67	0	6	25	1.15
661371--661401	16	1.9	16	93	0	53	83	3	3	9	0.86
661336--661390	26	2.1	26	83	12	69	70	0	7	21	1.11
662201--662229	12	2.3	13	94	5	51	58	3	0	37	1.15
662598--662821	114	2.0	114	90	1	360	38	13	7	39	1.74
665334--665374	18	2.3	18	95	4	75	17	4	14	63	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671965--671994	13	2.3	13	100	0	60	20	0	0	80	0.72
682975--683007	12	2.8	12	95	0	57	39	0	9	51	1.34
682972--683007	16	2.2	16	95	0	63	41	0	8	50	1.33
683969--684023	14	4.1	14	75	22	55	18	14	12	54	1.71
684675--684712	18	2.2	18	90	4	60	21	5	7	65	1.38
690574--690629	22	2.6	22	80	5	62	19	19	16	44	1.87
690684--690746	20	3.3	19	70	16	58	28	28	12	30	1.93
692454--692532	41	2.0	39	85	9	106	34	7	20	37	1.81
692733--692814	32	2.4	34	86	10	114	31	6	19	42	1.76
693424--693475	14	4.0	14	73	19	58	15	13	15	55	1.69
693410--693486	24	3.1	24	92	3	118	16	12	15	54	1.71
693438--693485	10	4.4	10	78	19	51	18	12	12	56	1.67
693858--693899	16	2.8	16	85	7	52	11	9	14	64	1.50
695316--695433	30	4.0	30	78	13	129	52	0	5	40	1.32
697020--697049	4	7.5	4	92	0	51	26	26	0	46	1.53
699462--699511	19	2.6	19	100	0	100	56	12	16	16	1.68
699564--699616	20	2.7	21	80	16	60	47	22	16	13	1.82
699564--699835	81	3.3	80	80	7	289	39	23	17	19	1.92
699625--699837	41	5.2	41	82	7	272	38	24	18	19	1.93
699625--699837	20	10.4	20	80	6	214	38	24	18	19	1.93
700343--700421	20	3.9	21	81	8	85	51	16	18	12	1.75
700403--700467	14	4.3	14	73	17	58	46	21	23	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700398--700478	33	2.5	33	93	0	135	46	22	20	9	1.80
700503--700558	20	2.8	20	84	10	87	14	25	21	39	1.91
702263--702496	95	2.5	95	92	0	398	22	13	17	46	1.83
704365--704398	14	2.4	14	95	0	59	35	0	20	44	1.52
704505--704555	14	3.1	17	72	21	54	45	17	23	13	1.84
704505--704592	33	2.7	33	87	0	122	46	14	22	15	1.83
704505--704565	19	3.5	19	72	21	69	44	16	22	16	1.86
704613--704793	33	5.3	33	80	10	193	13	20	21	43	1.87
704608--704770	19	9.3	19	71	21	124	12	20	21	44	1.85
704738--704765	14	2.0	14	100	0	56	14	21	21	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17