genome.fa.s8319.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008319.1 Hibiscus syriacus cultivar Beakdansim tig00111022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4819703

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  13  of  21  ( 2487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2845062--2845101	20	2.0	21	90	5	64	7	7	27	57	1.53
2846313--2846366	15	3.8	15	73	14	51	51	3	35	9	1.52
2853462--2853621	65	2.5	65	88	7	229	27	16	23	32	1.96
2853462--2853665	65	3.2	63	84	11	213	26	16	23	32	1.96
2854273--2854353	2	40.5	2	100	0	162	50	0	0	49	1.00
2854388--2854430	21	2.0	22	86	4	61	60	25	2	11	1.43
2856428--2856505	21	3.5	22	75	8	68	29	21	24	24	1.99
2860335--2860374	21	1.9	21	90	10	64	30	7	7	55	1.56
2862297--2862385	45	2.0	44	80	10	101	30	16	24	28	1.97
2862299--2862458	65	2.5	65	84	7	193	28	17	22	31	1.96
2866067--2866099	3	10.7	3	93	6	57	0	33	0	66	0.92
2866685--2866734	19	2.6	19	100	0	100	30	18	30	22	1.97
2867430--2867473	23	1.9	23	95	0	79	25	22	20	31	1.98
2873824--2873914	31	3.0	31	91	4	141	38	2	23	36	1.67
2874145--2874196	23	2.3	23	93	0	86	17	21	28	32	1.96
2874145--2874204	23	2.6	23	89	0	75	18	20	26	35	1.95
2879327--2879388	2	31.0	2	100	0	124	50	0	0	50	1.00
2879891--2880013	20	6.2	20	68	12	65	27	22	13	35	1.92
2879891--2879982	40	2.3	41	81	7	100	29	22	13	34	1.92
2879900--2880033	60	2.2	60	86	3	191	28	21	14	35	1.92
2879949--2880055	40	2.7	40	76	5	108	29	22	13	34	1.92
2879949--2880033	20	4.2	20	73	8	75	29	21	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2879925--2880053	60	2.2	60	83	5	163	27	22	12	37	1.90
2880429--2880469	18	2.3	18	91	0	64	17	2	26	53	1.56
2881862--2881895	16	2.1	16	88	0	50	58	11	14	14	1.63
2884195--2884234	21	1.9	21	94	0	71	30	15	7	47	1.72
2884229--2884327	33	3.0	33	94	1	164	32	7	15	45	1.73
2884313--2884367	13	4.2	13	75	13	58	34	3	12	49	1.59
2884697--2884752	15	3.6	15	79	9	67	32	12	12	42	1.80
2884716--2884749	18	1.9	18	94	5	61	38	11	11	38	1.79
2888272--2888302	15	2.1	15	93	0	53	61	0	3	35	1.12
2889048--2889195	61	2.5	60	81	6	165	34	23	12	29	1.92
2889062--2889195	20	6.7	20	80	10	114	32	23	12	31	1.92
2890141--2890194	24	2.2	24	93	0	90	20	18	20	40	1.91
2893236--2893272	18	2.1	18	89	0	56	32	5	10	51	1.60
2893228--2893280	24	2.2	24	86	0	70	35	3	13	47	1.61
2894441--2894476	18	2.0	18	94	0	63	55	22	2	19	1.56
2894792--2894940	64	2.3	64	89	0	217	51	16	2	29	1.56
2895604--2895677	22	3.4	22	76	0	67	22	13	37	25	1.91
2895788--2895825	20	2.0	20	89	5	60	47	10	15	26	1.78
2895835--2895880	20	2.3	20	92	0	74	21	13	21	43	1.86
2895872--2895920	20	2.5	20	82	0	62	26	18	18	36	1.94
2896064--2896110	18	2.5	19	83	10	53	42	4	2	51	1.33
2896106--2896145	21	1.9	21	89	0	62	20	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2899315--2899434	15	8.0	15	95	0	213	49	0	0	50	1.00
2899315--2899489	30	5.5	30	85	11	215	46	0	2	50	1.16
2899471--2899601	22	5.5	22	76	16	127	36	0	10	51	1.42
2899609--2899810	32	6.8	31	68	22	137	34	0	11	53	1.38
2899564--2899749	93	2.0	93	97	0	354	32	0	14	53	1.41
2899710--2900092	54	7.2	54	70	16	219	35	0	11	53	1.39
2899867--2899909	22	2.0	22	95	0	77	32	0	16	51	1.45
2899889--2900038	80	1.9	80	92	0	255	34	0	12	53	1.38
2899978--2900075	32	3.4	32	69	26	108	35	1	10	53	1.42
2899910--2900038	40	3.2	40	67	12	111	34	0	11	53	1.37
2899437--2900155	134	5.4	134	84	10	898	34	0	11	52	1.41
2900023--2900187	80	2.2	72	87	9	224	33	0	11	54	1.41
2900084--2900187	32	2.8	40	73	23	136	31	0	11	56	1.35
2900112--2900164	14	3.5	14	76	18	61	37	0	3	58	1.16
2900108--2900164	18	3.4	18	68	26	61	36	0	3	59	1.14
2900180--2900238	31	1.9	31	92	0	100	42	10	6	40	1.65
2902350--2902467	21	5.7	21	71	6	80	35	26	16	21	1.95
2902454--2902627	20	8.6	20	82	5	208	34	25	19	20	1.96
2903010--2903080	33	2.2	33	89	0	106	12	22	16	47	1.80
2903160--2903269	21	5.8	20	73	17	108	45	17	24	12	1.83
2903159--2903269	41	2.9	39	84	12	144	45	17	25	12	1.83
2903160--2903235	21	3.7	21	83	3	109	46	17	25	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2903212--2903292	33	2.5	33	93	0	135	46	20	22	9	1.80
2903220--2903276	14	3.7	14	70	20	51	43	21	24	10	1.83
2903288--2903415	19	7.1	19	71	19	87	10	25	18	45	1.82
2903310--2903366	14	3.7	14	75	20	60	8	24	22	43	1.81
2903293--2903415	33	3.5	33	88	10	165	10	24	18	46	1.81
2903351--2903415	21	3.1	21	82	4	96	10	26	15	47	1.78
2905113--2905674	93	6.1	93	99	0	1108	21	12	19	46	1.83
2905722--2905855	19	7.6	19	72	19	87	44	28	17	8	1.79
2905757--2905850	33	2.9	32	92	4	152	46	27	18	7	1.75
2905737--2905855	52	2.3	51	81	8	134	46	27	18	7	1.76
2905851--2906017	19	9.3	19	76	13	165	8	17	27	46	1.78
2905881--2906017	57	2.5	54	88	7	188	9	17	27	45	1.79
2905851--2905980	33	3.8	33	86	5	170	6	17	28	46	1.74
2905851--2906017	33	4.7	35	80	10	155	8	17	27	46	1.78
2907942--2907977	14	2.6	14	95	0	63	33	0	22	44	1.53
2908084--2908162	19	4.4	19	80	16	105	45	17	22	13	1.84
2908171--2908373	19	11.7	19	74	20	203	15	21	17	45	1.85
2908171--2908345	52	3.3	52	96	0	314	15	22	16	45	1.85
2908177--2908387	33	6.2	33	76	14	214	14	21	18	45	1.84
2910866--2910912	24	2.0	24	87	8	69	38	21	14	25	1.92
2911600--2911844	20	12.2	20	84	5	253	20	19	24	35	1.96
2911831--2911913	21	4.0	21	75	6	78	25	15	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2911811--2911909	42	2.4	43	77	11	100	21	17	23	38	1.93
2913372--2913439	26	2.6	26	83	0	82	45	4	13	36	1.63
2917477--2917539	32	2.0	31	90	9	101	44	12	3	39	1.59
2921865--2921889	11	2.3	11	100	0	50	36	0	0	64	0.94
2921977--2922009	15	2.2	15	94	0	57	45	0	0	54	0.99
2933693--2933737	21	2.1	21	87	0	63	31	28	24	15	1.96
2935111--2935238	31	4.1	31	80	9	152	26	18	21	33	1.96
2935197--2935293	30	3.2	30	88	1	113	22	20	24	31	1.98
2935224--2935296	30	2.4	30	95	0	128	24	20	24	30	1.99
2937036--2938923	945	2.0	940	95	1	3390	34	14	18	32	1.91
2940038--2940084	21	2.2	21	88	0	67	19	4	8	68	1.33
2940110--2940149	21	1.9	21	84	0	53	57	2	2	37	1.26
2941120--2941147	14	2.0	14	100	0	56	42	0	7	50	1.30
2941340--2941380	22	1.9	22	90	5	66	31	0	0	68	0.90
2941588--2941620	10	3.0	11	86	13	50	3	24	0	72	0.98
2942365--2942411	3	15.7	3	84	8	60	31	2	2	63	1.18
2942550--2942593	19	2.3	19	92	0	70	36	43	15	4	1.68
2945092--2945146	19	2.9	19	94	0	92	25	21	27	25	2.00
2945132--2945286	65	2.4	65	81	3	179	30	18	20	30	1.96
2946736--2946806	33	2.2	33	84	0	97	35	19	9	35	1.85
2947871--2947955	23	4.0	21	78	11	84	28	22	24	24	1.99
2948950--2949013	23	2.8	23	73	0	56	37	23	23	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950230--2950366	64	2.2	63	88	4	195	22	19	23	34	1.97
2951944--2952037	4	25.5	4	68	16	60	50	0	0	50	1.00
2951944--2952037	6	17.0	6	76	16	60	50	0	0	50	1.00
2951951--2952037	40	2.2	38	88	7	138	50	0	0	49	1.00
2957348--2957471	64	1.9	65	88	1	187	33	19	19	28	1.96
2957457--2957494	19	2.0	19	94	0	67	28	21	23	26	1.99
2967803--2967835	17	1.9	17	88	11	50	60	9	12	18	1.57
2973668--2973705	11	3.6	10	86	13	58	0	18	39	42	1.50
2973739--2973795	3	18.7	3	81	3	69	64	1	1	31	1.13
2973945--2974191	40	5.9	41	73	14	179	24	18	32	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21