Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: VEPZ01008319.1 Hibiscus syriacus cultivar Beakdansim tig00111022_pilon, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Length: 4819703

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  18  of  21  ( 2487 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3828424--3828460
14
2.6
14
91
0
65
45
21
0
32
1.52
3830319--3830623
94
3.3
94
91
3
458
46
18
12
21
1.82
3832303--3832398
20
5.2
20
72
21
91
45
18
23
11
1.82
3832350--3832405
14
3.6
14
74
21
58
42
23
25
8
1.82
3832301--3832407
33
3.0
33
85
9
133
43
20
25
10
1.83
3833004--3833093
20
4.4
20
84
2
126
20
21
20
38
1.93
3833004--3833093
41
2.2
40
88
2
126
20
21
20
38
1.93
3833022--3833231
41
5.1
42
74
9
157
28
18
20
32
1.96
3833090--3833145
20
2.7
21
80
5
69
42
16
21
19
1.89
3833007--3833127
61
2.0
61
80
6
138
25
20
19
34
1.96
3833083--3833155
21
3.5
21
79
3
76
36
17
21
23
1.94
3833165--3833216
20
2.5
21
84
3
70
23
19
17
40
1.91
3833206--3833258
21
2.5
22
81
6
74
33
18
26
20
1.96
3842880--3842914
15
2.4
15
90
4
54
60
0
0
40
0.97
3843886--3843996
23
4.8
23
92
0
141
27
22
17
32
1.96
3843900--3843996
11
8.4
12
76
7
94
25
22
17
34
1.96
3843900--3843996
46
2.1
46
92
0
158
25
22
17
34
1.96
3846128--3846166
14
2.8
14
88
0
60
23
0
28
48
1.51
3846125--3846171
21
2.2
21
80
0
58
27
0
27
44
1.55
3846278--3846340
11
5.9
11
73
14
60
39
1
1
57
1.18
3849111--3849192
29
2.8
29
94
1
137
32
14
9
42
1.79
3853875--3853956
29
2.8
29
94
1
137
32
14
9
42
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3870303--3870343
22
1.9
22
85
5
57
53
4
7
34
1.50
3879729--3879775
23
2.0
23
84
8
60
55
2
2
40
1.24
3882528--3882572
21
2.1
21
87
0
63
31
28
24
15
1.96
3883174--3883220
23
2.0
24
91
4
78
44
0
21
34
1.52
3883398--3883553
31
5.0
31
88
1
224
21
20
21
36
1.95
3883400--3883553
62
2.5
62
91
4
249
21
20
21
36
1.95
3886517--3886561
21
2.1
21
87
0
63
31
28
24
15
1.96
3887385--3887540
31
5.0
31
88
1
224
21
20
21
36
1.95
3887387--3887540
62
2.5
62
91
4
249
21
20
21
36
1.95
3889040--3889091
13
4.0
13
84
0
59
30
23
13
32
1.93
3891092--3891135
22
2.0
23
86
4
63
25
2
9
63
1.35
3891223--3891252
14
2.1
14
93
0
51
63
20
10
6
1.47
3895035--3895110
32
2.4
32
79
0
89
44
14
13
27
1.82
3895080--3895178
32
2.9
35
73
13
96
44
9
12
34
1.73
3897720--3897841
63
2.0
62
85
4
165
28
20
21
29
1.98
3897717--3897844
31
4.1
31
75
6
123
27
19
21
31
1.98
3906198--3906257
32
1.9
32
96
3
113
10
23
31
35
1.88
3908626--3908689
27
2.5
24
74
13
65
42
6
1
50
1.37
3908731--3908762
16
2.0
16
100
0
64
43
18
0
37
1.51
3908719--3908780
26
2.4
26
78
10
65
48
12
0
38
1.42
3909178--3909265
42
2.1
43
85
6
117
38
5
5
50
1.50
3909404--3909493
11
8.0
11
68
22
62
48
8
0
42
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3909429--3909489
8
8.1
8
75
14
67
50
8
0
40
1.32
3909372--3909486
57
2.0
57
81
6
135
46
11
0
41
1.46
3909418--3909502
36
2.4
36
86
7
120
50
8
0
41
1.32
3909410--3909501
22
4.1
23
79
10
102
50
8
0
41
1.33
3909407--3909481
14
5.1
14
81
12
87
49
8
0
42
1.32
3909745--3909802
13
4.5
13
71
20
50
43
8
1
46
1.44
3909745--3909813
25
2.7
25
84
13
95
42
8
2
46
1.49
3912239--3912270
11
2.9
11
100
0
64
37
6
28
28
1.81
3912920--3913040
10
12.6
9
77
13
107
16
27
28
28
1.97
3912940--3913040
19
5.3
19
79
13
102
15
27
29
26
1.96
3912919--3913033
29
3.9
29
91
4
178
17
26
26
28
1.98
3913006--3913045
19
2.1
19
95
0
71
17
27
32
22
1.96
3913043--3913098
17
3.3
17
97
0
103
19
46
21
12
1.83
3913088--3913118
7
4.4
7
95
0
53
19
29
25
25
1.99
3920274--3920376
9
10.8
9
71
12
62
17
26
28
28
1.98
3920274--3920312
21
1.9
21
89
5
62
17
25
23
33
1.96
3920295--3920382
19
4.7
18
81
12
106
15
28
29
26
1.96
3920295--3920382
9
9.3
9
75
13
70
15
28
29
26
1.96
3920378--3920433
17
3.3
17
94
0
103
17
44
23
14
1.85
3923294--3923441
63
2.3
64
92
1
244
27
30
24
17
1.97
3923321--3923431
32
3.5
32
67
8
93
26
32
25
16
1.96
3925923--3926027
48
2.2
48
96
0
201
34
18
13
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3943578--3943622
23
2.0
23
100
0
90
48
13
22
15
1.79
3957811--3957837
10
2.7
10
100
0
54
11
22
22
44
1.84
3963023--3963089
35
1.9
35
90
3
109
11
11
32
43
1.78
3972685--3972731
13
3.4
14
80
11
53
31
25
4
38
1.75
3973391--3973428
20
1.9
20
94
0
67
26
23
18
31
1.97
3975949--3976085
64
2.2
62
84
7
177
33
19
21
24
1.97
3976093--3976130
20
1.9
20
88
0
58
34
15
23
26
1.95
3976608--3976638
14
2.3
14
94
5
55
35
3
25
35
1.72
3980147--3980184
20
1.9
20
88
0
58
28
23
15
31
1.96
3981588--3981616
5
5.8
5
100
0
58
41
20
0
37
1.53
3981788--3981848
30
2.0
30
96
0
113
32
22
18
26
1.97
3997795--3997822
2
14.0
2
100
0
56
50
0
0
50
1.00
4004257--4004292
16
2.2
16
90
0
54
30
25
19
25
1.98
4016700--4016790
46
2.0
46
84
0
119
25
19
13
41
1.88
4022408--4022468
28
2.1
31
84
9
83
13
9
16
60
1.58
4022922--4022974
27
2.0
27
85
7
72
26
7
35
30
1.84
4027347--4027384
15
2.5
15
82
0
58
31
5
0
63
1.17
4028471--4028834
195
1.9
196
93
0
631
28
23
22
26
1.99
4034686--4034755
20
3.5
20
70
18
72
21
22
22
32
1.98
4034627--4034840
41
5.2
41
94
1
365
22
21
25
30
1.99
4034891--4034938
6
8.5
6
97
2
75
29
54
16
0
1.43
4035611--4035642
6
5.5
6
96
3
57
0
15
53
31
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4035886--4035918
16
2.0
17
88
5
50
33
6
6
54
1.50
4040485--4040525
16
2.6
16
92
3
66
36
9
21
31
1.86
4048704--4048760
28
2.0
28
96
0
105
54
7
15
22
1.65
4048710--4048769
28
2.1
28
87
0
84
56
11
13
18
1.66
4053651--4053718
20
3.3
21
77
8
68
41
1
8
48
1.43
4054421--4054457
17
2.1
19
85
10
51
35
8
8
48
1.62
4061892--4061928
6
6.2
6
100
0
74
35
48
16
0
1.46
4061926--4062004
5
15.8
5
95
0
113
18
36
40
3
1.69
4063285--4063365
22
3.6
22
96
1
144
24
29
27
18
1.98
4063299--4063361
10
5.5
13
65
27
52
26
26
26
19
1.99
4064015--4064058
2
22.0
2
100
0
88
50
0
0
50
1.00
4065050--4065094
21
2.1
21
87
0
63
15
24
28
31
1.96
4068270--4068350
22
3.6
22
96
1
144
24
29
27
18
1.98
4068284--4068346
10
5.5
13
65
27
52
26
26
26
19
1.99
4069001--4069080
2
40.0
2
100
0
160
50
0
0
50
1.00
4070080--4070124
21
2.1
21
87
0
63
15
24
28
31
1.96
4077815--4077843
15
2.0
15
93
6
51
20
6
3
68
1.27
4079966--4080221
84
3.0
84
87
0
377
32
11
34
21
1.90
4081476--4081554
39
2.1
38
95
4
142
37
16
7
37
1.77
4082234--4082787
282
2.0
282
88
0
822
36
20
22
20
1.95
4084151--4084207
29
2.0
29
89
0
87
38
3
12
45
1.59
4086454--4086504
20
2.5
20
100
0
102
5
25
27
41
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4087492--4087533
16
2.6
16
96
0
75
33
11
19
35
1.88
4088091--4088117
14
1.9
14
100
0
54
22
14
22
40
1.90
4088721--4088773
6
8.8
6
76
15
56
0
16
1
81
0.79
4088727--4088774
8
6.6
7
84
15
62
0
16
2
81
0.79
4088727--4088774
15
3.3
15
85
8
64
0
16
2
81
0.79
4088721--4088773
25
2.2
25
83
12
67
0
16
1
81
0.79
4105311--4105351
16
2.6
16
100
0
82
46
4
0
48
1.23
4124126--4124155
12
2.5
12
100
0
60
43
10
0
46
1.37
4125625--4125669
3
15.0
3
100
0
90
66
0
0
33
0.92
4128122--4128148
14
1.9
14
100
0
54
81
7
11
0
0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21