genome.fa.s8319.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008319.1 Hibiscus syriacus cultivar Beakdansim tig00111022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4819703

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  4  of  21  ( 2487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698494--698651	64	2.5	63	79	6	167	31	18	23	25	1.98
699903--700260	173	2.0	177	96	2	670	39	7	22	30	1.82
700450--700511	23	2.7	23	82	0	79	20	24	24	30	1.99
701369--701425	23	2.5	23	88	0	87	29	24	26	19	1.98
702965--703022	20	2.7	20	86	10	71	27	22	18	31	1.97
706502--706562	23	2.7	23	84	0	95	31	27	24	16	1.96
707736--707787	25	2.1	25	82	7	61	46	19	1	32	1.61
708077--708134	20	2.7	20	86	10	71	27	22	18	31	1.97
711613--711662	24	2.0	25	96	3	93	28	26	24	22	1.99
711617--711670	24	2.2	25	90	3	83	35	22	20	22	1.96
713363--713418	21	2.7	21	88	0	85	23	23	23	30	1.99
716779--716845	24	2.7	25	86	6	93	29	25	25	19	1.98
718539--718594	21	2.7	21	97	0	103	21	25	25	28	1.99
719180--719204	12	2.1	12	100	0	50	32	8	24	36	1.84
725163--725232	36	1.9	36	91	0	113	40	4	7	48	1.50
727235--727290	23	2.4	23	75	0	58	30	25	26	17	1.97
728193--728235	21	2.0	21	81	0	50	30	30	25	13	1.94
730929--730964	12	3.0	12	91	0	63	33	5	25	36	1.79
730929--730997	24	2.8	26	83	12	85	37	5	24	31	1.79
731109--731147	15	2.6	15	91	0	60	15	23	30	30	1.95
737780--737815	12	3.0	12	87	0	54	30	8	25	36	1.85
737966--738073	15	7.2	15	97	0	189	12	24	32	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738884--738975	23	4.0	23	89	0	139	20	28	25	26	1.99
745721--745785	23	2.8	23	75	9	62	24	24	24	26	2.00
750984--751075	23	4.0	23	88	0	130	21	28	23	26	1.99
756730--756798	23	3.0	23	78	0	84	31	23	26	18	1.97
757269--757296	2	14.0	2	100	0	56	50	0	0	50	1.00
758382--758462	24	3.5	24	81	6	98	25	27	18	28	1.98
770436--770496	30	2.1	30	81	6	72	49	1	3	45	1.28
770460--770501	18	2.4	17	84	11	57	45	2	2	50	1.27
774398--774438	2	20.5	2	100	0	82	51	0	0	48	1.00
776474--776504	12	2.6	12	94	0	53	51	6	41	0	1.27
785906--785959	26	2.1	26	89	3	83	35	18	9	37	1.83
820921--820945	2	12.5	2	100	0	50	52	0	48	0	1.00
826758--826795	5	7.6	5	96	0	67	42	0	36	21	1.53
830322--830367	20	2.6	18	86	13	60	39	10	26	23	1.88
830939--831200	141	1.9	140	84	4	357	31	7	26	34	1.84
831816--831890	37	2.0	37	84	5	98	48	6	0	45	1.29
833022--833060	17	2.2	18	90	4	62	38	5	15	41	1.69
833994--834166	86	2.0	86	88	5	256	39	15	7	36	1.76
847281--847616	168	2.0	168	100	0	672	26	15	24	33	1.95
855169--855226	28	2.0	29	96	3	109	36	22	27	13	1.92
856000--856051	24	2.2	24	92	0	86	38	13	9	38	1.77
868567--868647	41	1.9	43	85	5	112	30	22	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868758--869023	42	6.1	42	76	9	219	27	20	21	30	1.98
868889--868913	13	1.9	13	100	0	50	32	24	20	24	1.98
868909--869023	22	5.4	21	69	16	85	25	20	23	31	1.98
868808--869077	84	3.0	93	71	17	226	29	19	22	28	1.98
868755--869077	177	1.8	177	91	0	538	29	19	22	28	1.98
868901--869023	42	2.9	42	97	0	228	25	21	23	30	1.99
868900--869136	84	2.9	81	76	12	232	27	18	23	30	1.98
869066--869152	42	2.1	42	80	2	95	26	19	21	32	1.97
869529--869780	53	4.8	53	90	0	378	30	19	26	22	1.98
876201--876251	3	17.0	3	87	0	75	39	0	0	60	0.97
876201--876251	15	3.4	15	94	0	84	39	0	0	60	0.97
877667--877708	14	3.0	14	75	10	50	35	4	0	59	1.19
881693--881724	15	2.1	15	94	0	55	25	18	9	46	1.79
889045--889098	8	6.6	8	85	10	74	81	0	18	0	0.69
889042--889096	17	3.4	17	82	12	80	81	0	18	0	0.68
889034--889096	23	2.7	23	90	9	94	80	0	19	0	0.70
890249--890563	115	2.7	115	95	0	569	32	13	21	32	1.92
891253--892343	113	9.7	113	93	1	1767	38	14	18	27	1.90
892687--892725	3	13.0	3	94	0	69	35	0	0	64	0.94
901174--901328	79	2.0	79	98	0	301	40	8	10	40	1.71
901649--901690	21	2.0	21	90	9	68	42	38	0	19	1.51
903602--903659	30	1.9	30	92	0	98	18	31	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903643--903798	81	1.9	81	86	2	224	25	25	13	35	1.92
903729--903920	96	2.0	96	92	2	323	25	23	17	33	1.96
911637--911683	21	2.2	21	84	0	67	19	27	17	36	1.93
911909--911974	22	3.0	22	90	0	105	24	39	15	21	1.91
912311--912380	20	3.5	20	88	1	106	11	15	22	50	1.76
914276--914432	20	8.5	20	75	18	126	42	21	19	17	1.90
914299--914453	34	4.4	34	72	10	141	43	20	20	16	1.88
914479--914565	20	4.3	20	95	0	120	21	19	22	35	1.96
914477--914575	20	4.9	20	87	2	76	21	19	22	37	1.94
915049--915153	21	5.0	21	71	3	86	20	35	19	24	1.96
915046--915153	42	2.6	41	72	11	103	20	35	19	25	1.96
919607--919650	20	2.2	20	80	4	54	63	2	15	18	1.41
928604--928694	33	2.7	33	86	3	110	46	18	21	13	1.83
928670--928709	20	2.0	20	90	0	62	52	20	15	12	1.74
928747--928840	20	4.7	20	90	2	145	18	21	25	35	1.95
930332--930366	14	2.5	14	100	0	70	62	14	11	11	1.54
931268--931321	24	2.2	24	93	0	90	40	20	18	20	1.91
931268--931335	24	2.8	24	84	0	64	38	20	17	23	1.93
932162--932208	20	2.3	20	96	0	85	21	19	29	29	1.97
932195--932327	20	6.7	20	93	0	230	19	18	21	41	1.91
932324--932364	21	2.0	21	90	0	64	43	17	21	17	1.87
932962--932990	14	2.1	14	100	0	58	31	13	6	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938774--938811	3	12.7	3	94	0	58	34	26	34	5	1.79
938777--938814	18	2.1	18	95	0	67	34	23	34	7	1.84
938774--938816	21	2.0	21	100	0	86	32	23	34	9	1.87
943538--943674	53	2.6	52	79	3	150	25	9	14	50	1.73
948256--948303	25	1.9	25	95	0	87	54	0	10	35	1.35
948257--948320	25	2.5	25	87	2	83	57	0	9	32	1.30
950396--950452	30	1.9	31	82	10	75	49	3	7	40	1.47
952396--952440	23	2.0	23	83	16	58	53	4	4	37	1.41
952393--952444	22	2.4	21	79	20	54	55	3	5	34	1.42
952803--952863	32	1.9	33	83	6	81	47	1	3	47	1.28
953918--953954	4	9.2	4	100	0	74	75	0	0	24	0.80
957088--957157	34	2.1	34	84	5	90	21	30	15	32	1.94
958978--959025	19	2.4	21	80	13	57	29	10	6	54	1.59
960305--960344	21	1.9	21	89	0	62	15	27	37	20	1.92
968416--968468	24	2.2	25	89	3	81	22	1	1	73	1.03
968426--968489	24	2.6	24	82	2	65	31	3	0	65	1.08
968465--968506	20	2.2	19	83	8	50	38	4	2	54	1.34
968475--968512	20	1.9	20	88	0	58	39	2	7	50	1.46
984573--984610	19	2.0	20	94	5	69	60	0	2	36	1.11
985390--985438	20	2.5	19	74	9	53	32	24	18	24	1.97
985489--985638	20	7.5	20	74	7	72	27	23	14	35	1.93
985483--985616	60	2.2	60	90	1	207	28	21	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
985529--985638	40	2.7	39	77	10	114	29	23	13	33	1.93
985716--985767	22	2.4	22	86	0	68	13	44	17	25	1.85
987154--987277	42	3.0	42	88	3	173	21	13	38	25	1.91
989837--989888	24	2.2	24	82	0	59	36	21	19	23	1.95
990628--990676	18	2.8	17	78	9	53	57	8	0	34	1.29
990662--991059	32	14.4	31	70	25	242	52	13	0	33	1.44
990697--990769	22	3.1	22	71	15	58	54	17	0	27	1.43
990762--990815	14	3.6	14	72	18	54	59	3	0	37	1.15
990802--990845	21	2.1	21	100	0	88	52	13	0	34	1.41
990772--991059	80	3.5	82	81	10	308	52	12	0	34	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21